Jacob Köhler

20 papers C 1Journal 13Unranked 4
YearRankTypeTitle / Venue / Authors
2014 — ch.
Molecular Information Fusion in Ondex.
Approaches in Integrative Bioinformatics
Jan Taubert, Jacob Köhler
2009 — conf
Linking Life Sciences Data Using Graph-Based Mapping.
DILS
Jan Taubert, Matthew Hindle, Artem Lysenko, Jochen Weile, Jacob Köhler, Christopher J. Rawlings
2008 J jnl
Graph-based sequence annotation using a data integration approach.
J. Integr. Bioinform.
Robert Pesch, Artem Lysenko, Matthew Hindle, Keywan Hassani-Pak, Ralf Thiele, Christopher J. Rawlings, Jacob Köhler, Jan Taubert
2008 J jnl
PHI-base update: additions to the pathogen-host interaction database.
Nucleic Acids Res.
Rainer Winnenburg, Martin Urban, Andrew M. Beacham, Thomas K. Baldwin, Sabrina Holland, Magdalen Lindeberg, Hilde Hansen, Christopher J. Rawlings, Kim E. Hammond-Kosack, Jacob Köhler
2007 J jnl
The OXL format for the exchange of integrated datasets.
J. Integr. Bioinform.
Jan Taubert, Klaus Peter Sieren, Matthew Hindle, Berend Hoekman, Rainer Winnenburg, Stephan Philippi, Christopher J. Rawlings, Jacob Köhler
2006 J jnl
Automated Structure Extraction and XML Conversion of Life Science Database Flat Files.
IEEE Trans. Inf. Technol. Biomed.
Stephan Philippi, Jacob Köhler
2006 J jnl
Graph-based analysis and visualization of experimental results with ONDEX.
Bioinform.
Jacob Köhler, Jan Baumbach, Jan Taubert, Michael Specht, Andre Skusa, Alexander Rüegg, Christopher J. Rawlings, Paul Verrier, Stephan Philippi
2006 J jnl
Ontology based text indexing and querying for the semantic web.
Knowl. Based Syst.
Jacob Köhler, Stephan Philippi, Michael Specht, Alexander Rüegg
2006 J jnl
PHI-base: a new database for pathogen host interactions.
Nucleic Acids Res.
Rainer Winnenburg, Thomas K. Baldwin, Martin Urban, Christopher J. Rawlings, Jacob Köhler, Kim E. Hammond-Kosack
2006 J jnl
Quality control for terms and definitions in ontologies and taxonomies.
BMC Bioinform.
Jacob Köhler, Katherine Munn, Alexander Rüegg, Andre Skusa, Barry Smith
2005 J jnl
Extraction of biological interaction networks from scientific literature.
Briefings Bioinform.
Andre Skusa, Alexander Rüegg, Jacob Köhler
2004 J jnl
Linking experimental results, biological networks and sequence analysis methods using Ontologies and Generalized Data Structures.
Silico Biol.
Jacob Köhler, Christopher J. Rawlings, Paul Verrier, Rowan A. C. Mitchell, Andre Skusa, Alexander Rüegg, Stephan Philippi
2004 — conf
On the Application of Formal Principles to Life Science Data: a Case Study in the Gene Ontology.
DILS
Barry Smith, Jacob Köhler, Anand Kumar
2004 J jnl
Using XML Technology for the Ontology-Based Semantic Integration of Life Science Databases.
IEEE Trans. Inf. Technol. Biomed.
Stephan Philippi, Jacob Köhler
2003 — —
SEMEDA (semantic meta database): ontology based semantic integration of biological databases.
Jacob Köhler
2003 J jnl
SEMEDA: ontology based semantic integration of biological databases.
Bioinform.
Jacob Köhler, Stephan Philippi, Matthias Lange
2002 J jnl
The Semantic Metadatabase (SEMEDA): Ontology Based Integration of Federated Molecular Biological Data Sources.
Silico Biol.
Jacob Köhler, Steffen Schulze-Kremer
2002 — conf
The biology Petri net markup language.
Promise
Ming Chen, Andreas Freier, Jacob Köhler, Alexander Rüegg
2001 — conf
The Semantic Metadatabase (SEMEDA): Ontology Based Integration of Federated Molecular Biological Data Sources.
German Conference on Bioinformatics
Jacob Köhler, Steffen Schulze-Kremer
2000 C conf
Logical and Semantic Database Integration.
BIBE
Jacob Köhler, Matthias Lange, Ralf Hofestädt, Steffen Schulze-Kremer