Jacob de Vlieg

18 papers Journal 18
YearRankTypeTitle / Venue / Authors
2013 J jnl
Identification of new biomarker candidates for glucocorticoid induced insulin resistance using literature mining.
BioData Min.
Wilco W. M. Fleuren, Erik J. M. Toonen, Stefan Verhoeven, Raoul Frijters, Tim Hulsen, Ton Rullmann, René C. van Schaik, Jacob de Vlieg, Wynand Alkema
2012 J jnl
Comparative Analysis of Pharmacophore Screening Tools.
J. Chem. Inf. Model.
Marijn P. A. Sanders, Arménio Jorge Moura Barbosa, Barbara Zarzycka, Gerry A. F. Nicolaes, Jan P. G. Klomp, Jacob de Vlieg, Alberto Del Rio
2012 J jnl
Flexible protein-ligand docking using the Fleksy protocol.
J. Comput. Chem.
Markus Wagener, Jacob de Vlieg, Sander B. Nabuurs
2012 J jnl
Integrated Project Views: Decision Support Platform for Drug Discovery Project Teams.
J. Chem. Inf. Model.
Eric J. Baede, Ernest den Bekker, Jan-Willem Boiten, Deborah Cronin, Rob van Gammeren, Jacob de Vlieg
2012 J jnl
Pharmacophore Fingerprint-Based Approach to Binding Site Subpocket Similarity and Its Application to Bioisostere Replacement.
J. Chem. Inf. Model.
David J. Wood, Jacob de Vlieg, Markus Wagener, Tina Ritschel
2012 J jnl
Quantum mechanical polar surface area.
J. Comput. Aided Mol. Des.
Gijs Schaftenaar, Jacob de Vlieg
2011 J jnl
CoPub update: CoPub 5.0 a text mining system to answer biological questions.
Nucleic Acids Res.
Wilco W. M. Fleuren, Stefan Verhoeven, Raoul Frijters, Bart Heupers, Jan Polman, René C. van Schaik, Jacob de Vlieg, Wynand Alkema
2011 J jnl
Extraction of useful bioisostere replacments from the PDB.
J. Cheminformatics
Tina Ritschel, David J. Wood, Jacob de Vlieg, Markus Wagener
2011 J jnl
GPCRDB: information system for G protein-coupled receptors.
Nucleic Acids Res.
Bas Vroling, Marijn P. A. Sanders, Coos Baakman, Annika Borrmann, Stefan Verhoeven, Jan P. G. Klomp, Laerte Oliveira, Jacob de Vlieg, Gert Vriend
2011 J jnl
Snooker: A Structure-Based Pharmacophore Generation Tool Applied to Class A GPCRs.
J. Chem. Inf. Model.
Marijn P. A. Sanders, Stefan Verhoeven, Chris de Graaf, Luc Roumen, Bas Vroling, Sander B. Nabuurs, Jacob de Vlieg, Jan P. G. Klomp
2011 J jnl
ss-TEA: Entropy based identification of receptor specific ligand binding residues from a multiple sequence alignment of class A GPCRs.
BMC Bioinform.
Marijn P. A. Sanders, Wilco W. M. Fleuren, Stefan Verhoeven, Sven van den Beld, Wynand Alkema, Jacob de Vlieg, Jan P. G. Klomp
2010 J jnl
Fleksy: a flexible approach to induced fit docking.
J. Cheminformatics
Markus Wagener, Sander B. Nabuurs, Jacob de Vlieg
2010 J jnl
Integrating gene expression and GO classification for PCA by preclustering.
BMC Bioinform.
Jorn R. de Haan, Ester Piek, René C. van Schaik, Jacob de Vlieg, Susanne Bauerschmidt, Lutgarde M. C. Buydens, Ron Wehrens
2010 J jnl
Literature Mining for the Discovery of Hidden Connections between Drugs, Genes and Diseases.
PLoS Comput. Biol.
Raoul Frijters, Marianne van Vugt, Ruben Smeets, René C. van Schaik, Jacob de Vlieg, Wynand Alkema
2009 J jnl
PhyloPat: an updated version of the phylogenetic pattern database contains gene neighborhood.
Nucleic Acids Res.
Tim Hulsen, Peter M. A. Groenen, Jacob de Vlieg, Wynand Alkema
2008 J jnl
CoPub: a literature-based keyword enrichment tool for microarray data analysis.
Nucleic Acids Res.
Raoul Frijters, Bart Heupers, Pieter van Beek, Maurice Bouwhuis, René C. van Schaik, Jacob de Vlieg, Jan Polman, Wynand Alkema
2006 J jnl
PhyloPat: phylogenetic pattern analysis of eukaryotic genes.
BMC Bioinform.
Tim Hulsen, Jacob de Vlieg, Peter M. A. Groenen
2006 J jnl
Testing statistical significance scores of sequence comparison methods with structure similarity.
BMC Bioinform.
Tim Hulsen, Jacob de Vlieg, Jack A. M. Leunissen, Peter M. A. Groenen