Jack Lee

37 papers C 1Journal 23Unranked 13
YearRankTypeTitle / Venue / Authors
2025 J jnl
IEEE Trans. Medical Imaging
Christoforos Galazis, Samuel Shepperd, Emma J. P. Brouwer, Sandro F. Queirós, Ebraham Alskaf, Mustafa Anjari, Amedeo Chiribiri, Jack Lee, Anil A. Bharath, Marta Varela
2025 J jnl
NeuroImage
Zijian Gao, Ziqin Zhou, Ziqiang Yu, Qianxue Shan, Jack Lee, Jill M. Abrigo, Edward S. Hui, Tiffany So, Weitian Chen
2023 J jnl
CoRR
Christoforos Galazis, Samuel Shepperd, Emma Brouwer, Sandro F. Queirós, Ebraham Alskaf, Mustafa Anjari, Amedeo Chiribiri, Jack Lee, Anil A. Bharath, Marta Varela
2022 J jnl
Comput. Methods Programs Biomed.
Konstantinos G. Lyras, Jack Lee
2022 J jnl
CoRR
Junru Zhong, Yongcheng Yao, Donal G. Cahill, Fan Xiao, Siyue Li, Jack Lee, Kevin Ki-Wai Ho, Michael Tim-Yun Ong, James F. Griffith, Weitian Chen
2021 conf
FIMH
Sandra P. Hager, Will Zhang, Renee M. Miller, Jack Lee, David A. Nordsletten
2020 J jnl
Medical Image Anal.
Cian M. Scannell, Amedeo Chiribiri, Adriana D. M. Villa, Marcel Breeuwer, Jack Lee
2020 conf
EMBC
Marta Varela, Sandro F. Queirós, Mustafa Anjari, Teresa Correia, Andrew P. King, Anil A. Bharath, Jack Lee
2019 J jnl
CoRR
Cian M. Scannell, Piet van den Bosch, Amedeo Chiribiri, Jack Lee, Marcel Breeuwer, Mitko Veta
2019 J jnl
CoRR
Cian M. Scannell, Amedeo Chiribiri, Adriana D. M. Villa, Marcel Breeuwer, Jack Lee
2019 J jnl
IEEE Trans. Medical Imaging
Cian M. Scannell, Adriana D. M. Villa, Jack Lee, Marcel Breeuwer, Amedeo Chiribiri
2019 J jnl
IEEE Trans. Biomed. Eng.
Sophie Giffard-Roisin, Herve Delingette, Thomas Jackson, Jessica Webb, Lauren Fovargue, Jack Lee, Christopher A. Rinaldi, Reza Razavi, Nicholas Ayache, Maxime Sermesant
2018 conf
STACOM@MICCAI
Eric Kerfoot, James R. Clough, Ilkay Öksüz, Jack Lee, Andrew P. King, Julia A. Schnabel
2017 J jnl
Bioinform.
Maggie Haitian Wang, Haoyi Weng, Rui Sun, Jack Lee, William Ka Kei Wu, Ka Chun Chong, Benny Zee
2017 J jnl
IEEE Trans. Biomed. Eng.
Simone Rivolo, Tiffany Patterson, Kaleab N. Asrress, Michael Marber, Simon Redwood, Nicolas P. Smith, Jack Lee
2017 J jnl
IEEE Trans. Biomed. Eng.
Sophie Giffard-Roisin, Thomas Jackson, Lauren Fovargue, Jack Lee, Herve Delingette, Reza Razavi, Nicholas Ayache, Maxime Sermesant
2017 conf
FIMH
Sophie Giffard-Roisin, Hervé Delingette, Thomas Jackson, Lauren Fovargue, Jack Lee, C. Aldo Rinaldi, Nicholas Ayache, Reza Razavi, Maxime Sermesant
2016 conf
MIAR
Eric Kerfoot, Lauren Fovargue, Simone Rivolo, Wenzhe Shi, Daniel Rueckert, David Nordsletten, Jack Lee, Radomír Chabiniok, Reza Razavi
2016 conf
STACOM@MICCAI
Sophie Giffard-Roisin, Lauren Fovargue, Jessica Webb, Roch Molléro, Jack Lee, Hervé Delingette, Nicholas Ayache, Reza Razavi, Maxime Sermesant
2016 J jnl
IEEE Trans. Haptics
Seyed Farokh Atashzar, Mahya Shahbazi, Christopher Ward, Olivia Samotus, Mehdi Delrobaei, Fariborz Rahimi, Jack Lee, Mallory Jackman, Mandar S. Jog, Rajni V. Patel
2016 J jnl
SIAM J. Sci. Comput.
Jack Lee, Andrew N. Cookson, Ishani Roy, Eric Kerfoot, Liya Asner, Guillermo Vigueras, Taha Sochi, Simone Deparis, Christian Michler, Nicolas P. Smith, David A. Nordsletten
2014 J jnl
Medical Image Anal.
Andrew N. Cookson, Jack Lee, Christian Michler, Radomír Chabiniok, Eoin R. Hyde, David Nordsletten, Nicolas Smith
2014 conf
EMBC
Simone Rivolo, Eike Nagel, Nicolas P. Smith, Jack Lee
2014 J jnl
Comput. Educ.
Paul Lam, Carmel McNaught, Jack Lee, Mavis Chan
2014 conf
STACOM
Liya Asner, Myrianthi Hadjicharalambous, Jack Lee, David Nordsletten
2013 J jnl
IEEE Trans. Medical Imaging
Ayush Goyal, Jack Lee, Pablo Lamata, Jeroen P. H. M. van den Wijngaard, Pepijn van Horssen, Jos A. E. Spaan, Maria Siebes, Vicente Grau, Nic Smith
2013 J jnl
Medical Biol. Eng. Comput.
Froukje Nolte, Eoin R. Hyde, Cristina Rolandi, Jack Lee, Pepijn van Horssen, Kaleab N. Asrress, Jeroen P. H. M. van den Wijngaard, Andrew N. Cookson, Tim van de Hoef, Radomír Chabiniok, Reza Razavi, Christian Michler, Gilion L. T. F. Hautvast, Jan J. Piek, Marcel Breeuwer, Maria Siebes, Eike Nagel, Nic Smith, Jos A. E. Spaan
2013 J jnl
Medical Biol. Eng. Comput.
Eoin R. Hyde, Christian Michler, Jack Lee, Andrew N. Cookson, Radek Chabiniok, David Nordsletten, Nicolas Smith
2012 J jnl
IEICE Trans. Inf. Syst.
Dongxi Liu, Jack Lee, Julian Jang, Surya Nepal, John Zic
2010 C conf
EUC
Dongxi Liu, Jack Lee, Julian Jang, Surya Nepal, John Zic
2010 conf
CSEDU (1)
Paul Lam, Jack Lee, Mavis Chan, Carmel McNaught
2010 conf
MICCAI (2)
Pablo Lamata, Steven A. Niederer, David C. Barber, David Nordsletten, Jack Lee, Rod D. Hose, Nic Smith
2007 J jnl
Medical Image Anal.
Jack Lee, Patricia Beighley, Erik Ritman, Nicolas Smith
2000 J jnl
J. Educ. Technol. Soc.
Xun Ge, Kelly Ann Yamashiro, Jack Lee
1999 conf
WebNet
Kelly Ann Yamashiro, Jack Lee, Xun Ge
1999 conf
WebNet
Jack Lee, Kelly Ann Yamashiro
1999 conf
WebNet
Kelly Ann Yamashiro, Jack Lee, Xun Ge
docs/macho_extractors_README.md
← Index docs/macho_extractors_README.md markdown
# MachO Extractors for RedB

This document describes the MachO extractors implementation for the RedB binary analysis framework.

## Overview

The MachO extractors provide comprehensive analysis capabilities for Mach-O binaries (macOS, iOS, watchOS, tvOS executables) following the same pattern as the existing PE extractors. The implementation uses the `machofile` library located in the `docs/` folder.

## Architecture

### Main Components

1. **MachOExtractor** (`redb/extractors/macho_extractor.py`)
   - Abstract base class for all MachO extractors
   - Handles MachO file parsing and common functionality
   - Supports both single-architecture and Universal/FAT binaries

2. **Individual Extractors** (`redb/extractors/macho_extractors/`)
   - `macho_features.py` - Basic MachO header and metadata
   - `macho_segments.py` - Segment information and analysis
   - `macho_imports.py` - Imported functions and libraries
   - `macho_exports.py` - Exported symbols
   - `macho_dylibs.py` - Dynamic library dependencies
   - `macho_signature.py` - Code signing information

3. **Data Models** (`redb/models/dataclasses.py`)
   - MachO-specific dataclasses for structured data storage
   - Compatible with Elasticsearch and ClickHouse exporters

## Features

### Supported Binary Types
- Single-architecture Mach-O binaries (32-bit and 64-bit)
- Universal/FAT binaries with multiple architectures
- All major CPU architectures (x86, x86_64, ARM, ARM64)

### Extracted Information

#### MachO Features
- Header information (magic, CPU type, file type, flags)
- Architecture detection
- Entry point information
- UUID
- Version information
- Signing status
- Encryption status
- Counts (segments, dylibs, imports, exports)

#### Segments
- Segment names and properties
- Virtual addresses and sizes
- File offsets and sizes
- Protection flags
- Entropy calculation
- Segment hashes (MD5, SHA256)

#### Imports
- Imported function names
- Library dependencies
- Import counts and statistics

#### Exports
- Exported symbol names
- Export counts and statistics

#### Dynamic Libraries
- Dylib names and paths
- Version information
- Timestamps
- Load command types

#### Code Signing
- Signing status
- Certificate information
- Entitlements
- Code directory details

## Usage

### Basic Usage

```python
from redb.extractors.macho_extractors import MachOFeaturesExtractor

# Create extractor
extractor = MachOFeaturesExtractor(
    filepath="/path/to/macho/binary",
    log=logger
)

# Extract data
features = extractor.extract()

# Export to databases
extractor.export_data()
```

### Testing

Use the provided test script to verify functionality:

```bash
python test_macho_extractors.py /path/to/macho/binary
```

## Implementation Details

### Universal Binary Support

The extractors handle Universal/FAT binaries by:
1. Detecting FAT binary format
2. Extracting individual architectures
3. Providing unified interface for both single and multi-arch binaries
4. Supporting architecture-specific extraction

### Error Handling

- Graceful handling of malformed binaries
- Comprehensive logging for debugging
- Fallback mechanisms for missing data
- Exception handling for corrupted files

### Performance Considerations

- Lazy parsing of MachO structures
- Efficient memory usage for large binaries
- Cached property access for repeated queries
- Optimized data extraction patterns

## Integration

### Database Exporters

The extractors support both Elasticsearch and ClickHouse exporters:

- **Elasticsearch**: JSON document storage with full-text search
- **ClickHouse**: Columnar storage for analytical queries

### Schema Compatibility

All extractors follow the established schema patterns:
- Consistent field naming
- Proper data types
- Timestamp handling
- Hash field inclusion

## Future Enhancements

Potential areas for improvement:

1. **Additional Extractors**
   - MachO resources extraction
   - Symbol table analysis
   - Relocation information
   - Thread state analysis

2. **Enhanced Analysis**
   - Malware detection patterns
   - Behavioral analysis
   - Similarity hashing
   - YARA rule integration

3. **Performance Optimizations**
   - Parallel processing for multi-arch binaries
   - Streaming data processing
   - Memory-mapped file access

## Dependencies

- `machofile` library (included in `docs/`)
- Standard Python libraries (hashlib, datetime, etc.)
- RedB framework components

## Contributing

When adding new MachO extractors:

1. Follow the established pattern in existing extractors
2. Add appropriate dataclasses to `dataclasses.py`
3. Update the enum tags in `enum.py`
4. Include comprehensive error handling
5. Add tests for new functionality
6. Update this documentation

## Troubleshooting

### Common Issues

1. **Import Errors**: Ensure `machofile` library is accessible
2. **Memory Issues**: Large Universal binaries may require significant memory
3. **Corrupted Files**: Malformed MachO files may cause parsing errors
4. **Architecture Mismatch**: Some features may not be available for all architectures

### Debugging

Enable debug logging to see detailed extraction process:

```python
import logging
logging.basicConfig(level=logging.DEBUG)
```

## License

This implementation follows the same license as the main RedB project.