Jack L. Lancaster

25 papers Misc 1Journal 24
YearRankTypeTitle / Venue / Authors
2014 J jnl
NeuroImage
Shalini Narayana, Wei Zhang, William Rogers, Casey Strickland, Crystal Franklin, Jack L. Lancaster, Peter T. Fox
2013 J jnl
NeuroImage
S. A. Wijtenburg, S. A. McGuire, L. M. Rowland, P. M. Sherman, Jack L. Lancaster, David F. Tate, L. J. Hardies, Binish Patel, David C. Glahn, L. Elliot Hong, Peter T. Fox, Peter V. Kochunov
2012 J jnl
Neuroinformatics
Peter V. Kochunov, William Rogers, Jean-François Mangin, Jack L. Lancaster
2012 J jnl
Frontiers Neuroinformatics
Jack L. Lancaster, Angela R. Laird, Simon B. Eickhoff, Michael J. Martinez, P. Mickle Fox, Peter T. Fox
2012 J jnl
NeuroImage
Shalini Narayana, Angela R. Laird, Nitin Tandon, Crystal Franklin, Jack L. Lancaster, Peter T. Fox
2011 J jnl
Neuroinformatics
Jack L. Lancaster, D. Reese McKay, Matthew D. Cykowski, Michael J. Martinez, Xi Tan, Sunil Valaparla, Yi Zhang, Peter T. Fox
2011 J jnl
NeuroImage
Peter V. Kochunov, David C. Glahn, Jack L. Lancaster, Paul M. Thompson, V. Kochunov, B. Rogers, Peter T. Fox, John Blangero, D. E. Williamson
2010 J jnl
Neuroinformatics
Jack L. Lancaster, Matthew D. Cykowski, David Reese McKay, Peter V. Kochunov, Peter T. Fox, William Rogers, Arthur W. Toga, Karl Zilles, Katrin Amunts, John C. Mazziotta
2010 J jnl
NeuroImage
Angela R. Laird, Jennifer L. Robinson, Kathryn M. McMillan, Diana Tordesillas-Gutierrez, Sarah T. Moran, Sabina M. Gonzales, Kimberly L. Ray, Crystal Franklin, David C. Glahn, Peter T. Fox, Jack L. Lancaster
2010 J jnl
NeuroImage
Peter V. Kochunov, David C. Glahn, Jack L. Lancaster, Anderson M. Winkler, Stephen M. Smith, Paul M. Thompson, Laura Almasy, Ravindranath Duggirala, Peter T. Fox, John Blangero
2010 J jnl
NeuroImage
Peter V. Kochunov, David C. Glahn, Peter T. Fox, Jack L. Lancaster, K. Saleem, Wendy Shelledy, Karl Zilles, Paul M. Thompson, Olivier Coulon, Jean-François Mangin, John Blangero, Jeffrey Rogers
2010 J jnl
NeuroImage
Jeffrey Rogers, Peter V. Kochunov, Karl Zilles, Wendy Shelledy, Jack L. Lancaster, Paul M. Thompson, Ravindranath Duggirala, John Blangero, Peter T. Fox, David C. Glahn
2010 J jnl
NeuroImage
Peter V. Kochunov, Thomas R. Coyle, Jack L. Lancaster, Donald A. Robin, L. J. Hardies, V. Kochunov, George Bartzokis, J. Stanley, Donald Royall, A. E. Schlosser, M. Null, Peter T. Fox
2009 J jnl
Frontiers Neuroinformatics
Angela R. Laird, Simon B. Eickhoff, Florian Kurth, Peter M. Fox, Angela Uecker, Jessica A. Turner, Jennifer L. Robinson, Jack L. Lancaster, Peter T. Fox
2009 J jnl
NeuroImage
Peter V. Kochunov, A. E. Ramage, Jack L. Lancaster, Donald A. Robin, Shalini Narayana, Thomas R. Coyle, Donald Royall, Peter T. Fox
2009 J jnl
NeuroImage
Angela R. Laird, Jack L. Lancaster, Peter T. Fox
2007 J jnl
NeuroImage
Peter V. Kochunov, Paul M. Thompson, Jack L. Lancaster, George Bartzokis, Stephen M. Smith, Thomas R. Coyle, Donald Royall, Angela R. Laird, Peter T. Fox
2005 J jnl
Neuroinformatics
Angela R. Laird, Jack L. Lancaster, Peter T. Fox
2004 J jnl
NeuroImage
Ching-Mei Feng, Shalini Narayana, Jack L. Lancaster, Paul Jerabek, Thomas L. Arnow, Fang Zhu, Li-Hai Tan, Peter T. Fox, Jia-Hong Gao
2003 J jnl
NeuroImage
Lisa D. H. Nickerson, Shalini Narayana, Jack L. Lancaster, Peter T. Fox, Jia-Hong Gao
2003 J jnl
NeuroImage
Jae Sung Lee, Shalini Narayana, Jack L. Lancaster, Paul Jerabek, Dong Soo Lee, Peter T. Fox
2002 J jnl
NeuroImage
Peter V. Kochunov, Jack L. Lancaster, Paul M. Thompson, Arthur W. Toga, P. Brewer, L. J. Hardies, Peter T. Fox
2002 Misc conf
AMIA
Peter V. Kochunov, Jack L. Lancaster, Peter T. Fox
2001 J jnl
NeuroImage
Lisa D. H. Nickerson, Charles C. Martin, Jack L. Lancaster, Jia-Hong Gao, Peter T. Fox
2001 J jnl
J. Am. Medical Informatics Assoc.
John C. Mazziotta, Arthur W. Toga, Alan C. Evans, Peter T. Fox, Jack L. Lancaster, Karl Zilles, Roger P. Woods, Tomás Paus, Gregory Simpson, G. Bruce Pike, Colin J. Holmes, D. Louis Collins, Paul M. Thompson, David MacDonald, Marco Iacoboni, Thorsten Schormann, Katrin Amunts, Nicola Palomero-Gallagher, Stefan Geyer, Larry Parsons, Katherine L. Narr, Noor Kabani, Georges Le Goualher, Jordan Feidler, Kenneth P. Smith, Dorret I. Boomsma, Hilleke E. Hulshoff Pol, Tyrone D. Cannon, Ryuta Kawashima, Bernard Mazoyer
redb/extractors/decompiler/apk/smali_parser.py
← Index redb/extractors/decompiler/apk/smali_parser.py python
"""Smali file parser — extracts individual method bodies from apktool output.

Parses .smali files produced by apktool and extracts per-method bodies,
instruction counts, and register counts.
"""

import os
import re
from dataclasses import dataclass, field
from typing import Dict, List, Optional


@dataclass
class SmaliMethod:
    """Parsed smali method data."""
    class_name: str
    method_name: str
    method_signature: str
    body: str
    instruction_count: int = 0
    register_count: int = 0
    access_flags: List[str] = field(default_factory=list)


# Directives start with '.' — these are metadata, not instructions
_DIRECTIVE_RE = re.compile(r"^\s*\.")
# Labels start with ':'
_LABEL_RE = re.compile(r"^\s*:")
# Blank or comment lines
_BLANK_OR_COMMENT_RE = re.compile(r"^\s*(#.*)?$")
# Method declaration
_METHOD_START_RE = re.compile(
    r"^\.method\s+(.*?)\s+(\S+)\(([^)]*)\)(\S+)\s*$"
)
_METHOD_START_SIMPLE_RE = re.compile(
    r"^\.method\s+(.*)"
)
# .registers or .locals directive
_REGISTERS_RE = re.compile(r"^\s*\.registers\s+(\d+)")
_LOCALS_RE = re.compile(r"^\s*\.locals\s+(\d+)")
# .line directive
_LINE_RE = re.compile(r"^\s*\.line\s+\d+")


class SmaliParser:
    """Parser for apktool smali output files."""

    @staticmethod
    def parse_smali_file(filepath: str) -> List[SmaliMethod]:
        """Parse a single .smali file and return list of methods.

        Each .smali file contains one class with all its methods.
        """
        with open(filepath, "r", encoding="utf-8", errors="replace") as f:
            content = f.read()

        return SmaliParser._parse_smali_content(content, filepath)

    @staticmethod
    def _parse_smali_content(content: str, source: str = "") -> List[SmaliMethod]:
        """Parse smali text content and extract methods."""
        lines = content.split("\n")
        methods = []

        # Extract class name from .class directive
        class_name = ""
        for line in lines:
            if line.startswith(".class "):
                parts = line.split()
                class_name = parts[-1]  # Last token is the class descriptor
                break

        in_method = False
        method_lines = []
        method_header = ""
        access_flags = []
        skip_method = False

        for line in lines:
            if line.startswith(".method "):
                in_method = True
                method_lines = []
                method_header = line
                skip_method = False

                # Parse access flags and method signature
                remainder = line[len(".method "):].strip()
                tokens = remainder.split()
                access_flags = []
                method_sig_token = tokens[-1] if tokens else ""

                for t in tokens[:-1]:
                    access_flags.append(t)

                # Skip abstract and native methods (no body)
                if "abstract" in access_flags or "native" in access_flags:
                    skip_method = True

            elif line.startswith(".end method"):
                if in_method and not skip_method:
                    body = "\n".join(method_lines)
                    method_name, signature = SmaliParser._parse_method_sig(
                        method_header
                    )
                    instruction_count = SmaliParser.count_instructions(body)
                    register_count = SmaliParser._extract_register_count(body)

                    methods.append(
                        SmaliMethod(
                            class_name=class_name,
                            method_name=method_name,
                            method_signature=signature,
                            body=body,
                            instruction_count=instruction_count,
                            register_count=register_count,
                            access_flags=access_flags,
                        )
                    )
                in_method = False
                method_lines = []
                access_flags = []

            elif in_method and not skip_method:
                method_lines.append(line)

        return methods

    @staticmethod
    def parse_smali_directory(dirpath: str) -> Dict[str, SmaliMethod]:
        """Parse all .smali files in a directory tree.

        Returns dict keyed by 'ClassName->methodName(signature)ReturnType'.
        """
        result = {}
        for root, _dirs, files in os.walk(dirpath):
            for fname in files:
                if fname.endswith(".smali"):
                    fpath = os.path.join(root, fname)
                    try:
                        methods = SmaliParser.parse_smali_file(fpath)
                        for m in methods:
                            key = SmaliParser.make_method_key(
                                m.class_name, m.method_name, m.method_signature
                            )
                            result[key] = m
                    except Exception:
                        continue
        return result

    @staticmethod
    def normalize_smali_body(body: str) -> str:
        """Normalize smali body for consistent hashing.

        Strips comments, .line directives, normalizes whitespace.
        """
        lines = []
        for line in body.split("\n"):
            stripped = line.strip()
            # Skip empty lines, comments, and .line directives
            if not stripped or stripped.startswith("#"):
                continue
            if _LINE_RE.match(stripped):
                continue
            lines.append(stripped)
        return "\n".join(lines)

    @staticmethod
    def count_instructions(body: str) -> int:
        """Count actual Dalvik instructions (skip directives, labels, blanks)."""
        count = 0
        for line in body.split("\n"):
            stripped = line.strip()
            if not stripped:
                continue
            if _DIRECTIVE_RE.match(stripped):
                continue
            if _LABEL_RE.match(stripped):
                continue
            if _BLANK_OR_COMMENT_RE.match(stripped):
                continue
            count += 1
        return count

    @staticmethod
    def _extract_register_count(body: str) -> int:
        """Extract register count from .registers or .locals directive.

        apktool outputs .locals (local registers only) by default.
        .registers (total = locals + params) is used with --use-registers.
        We return whichever is present.
        """
        for line in body.split("\n"):
            stripped = line.strip()
            m = _REGISTERS_RE.match(stripped)
            if m:
                return int(m.group(1))
            m = _LOCALS_RE.match(stripped)
            if m:
                return int(m.group(1))
        return 0

    @staticmethod
    def _parse_method_sig(header_line: str) -> tuple:
        """Parse method name and signature from .method header line.

        Input: '.method public onCreate(Landroid/os/Bundle;)V'
        Returns: ('onCreate', '(Landroid/os/Bundle;)V')
        """
        remainder = header_line[len(".method "):].strip()
        tokens = remainder.split()
        if not tokens:
            return ("unknown", "()")

        # Last token contains methodName(params)returnType
        method_part = tokens[-1]

        paren_idx = method_part.find("(")
        if paren_idx == -1:
            return (method_part, "()")

        method_name = method_part[:paren_idx]
        signature = method_part[paren_idx:]

        return (method_name, signature)

    @staticmethod
    def make_method_key(class_name: str, method_name: str, signature: str) -> str:
        """Build a canonical method key for cross-tool matching.

        Format: 'Lcom/example/Foo;->methodName(params)ReturnType'
        """
        return f"{class_name}->{method_name}{signature}"