Jack A. M. Leunissen

24 papers Journal 22Unranked 2
YearRankTypeTitle / Venue / Authors
2015 J jnl
Bioinform.
Arnold Kuzniar, Somdutta Dhir, Harm Nijveen, Sándor Pongor, Jack A. M. Leunissen
2012 J jnl
Nucleic Acids Res.
Hong Luo, Ke Lin, Audrey David, Harm Nijveen, Jack A. M. Leunissen
2012 conf
BIOINFORMATICS
Frédérique Lisacek, Patrick Koks, Pascale Berthault, Grégoire Rossier, Guy Bottu, Jacques van Helden, Jean Sylvestre, Jean-Pierre Kraehenbuhl, Jack A. M. Leunissen
2011 J jnl
J. Integr. Bioinform.
Ke Lin, Harrie Kools, Philip J. de Groot, Anand K. Gavai, Ram K. Basnet, Feng Cheng, Jian Wu, Xiaowu Wang, Arjen Lommen, Guido J. E. K. Hooiveld, Guusje Bonnema, Richard G. F. Visser, Michael R. Müller, Jack A. M. Leunissen
2011 J jnl
PLoS Comput. Biol.
Allegra Via, Javier De Las Rivas, Teresa K. Attwood, David Landsman, Michelle D. Brazas, Jack A. M. Leunissen, Anna Tramontano, Maria Victoria Schneider
2010 J jnl
Silico Biol.
Judith E. Risse, Jack A. M. Leunissen
2010 J jnl
J. Integr. Bioinform.
Ernest A. A. van Ophuizen, Jack A. M. Leunissen
2010 J jnl
Bioinform.
Arnold Kuzniar, Somdutta Dhir, Harm Nijveen, Sándor Pongor, Jack A. M. Leunissen
2010 conf
ITBAM
Ingo H. C. Wassink, Matthijs Ooms, Pieter B. T. Neerincx, Gerrit C. van der Veer, Han Rauwerda, Jack A. M. Leunissen, Timo M. Breit, Anton Nijholt, Paul E. van der Vet
2009 J jnl
Nucleic Acids Res.
Arnold Kuzniar, Ke Lin, Ying He, Harm Nijveen, Sándor Pongor, Jack A. M. Leunissen
2008 J jnl
BMC Bioinform.
Jifeng Tang, Samantha J. Baldwin, Jeanne M. E. Jacobs, C. Gerard van der Linden, Roeland E. Voorrips, Jack A. M. Leunissen, Herman van Eck, Ben Vosman
2008 J jnl
Nucleic Acids Res.
Bernd W. Brandt, Jaap Heringa, Jack A. M. Leunissen
2007 J jnl
Nucleic Acids Res.
Paolo Sonego, Mircea Pacurar, Somdutta Dhir, Attila Kertész-Farkas, András Kocsor, Zoltán Gáspári, Jack A. M. Leunissen, Sándor Pongor
2007 J jnl
Nucleic Acids Res.
Andreas Untergasser, Harm Nijveen, Xiangyu Rao, Ton Bisseling, René Geurts, Jack A. M. Leunissen
2006 J jnl
BMC Bioinform.
Jifeng Tang, Ben Vosman, Roeland E. Voorrips, C. Gerard van der Linden, Jack A. M. Leunissen
2006 J jnl
BMC Bioinform.
Tim Hulsen, Jacob de Vlieg, Jack A. M. Leunissen, Peter M. A. Groenen
2006 J jnl
Nucleic Acids Res.
Blaise T. F. Alako, Daphne Rainey, Harm Nijveen, Jack A. M. Leunissen
2005 J jnl
Briefings Bioinform.
Pieter B. T. Neerincx, Jack A. M. Leunissen
2005 J jnl
Nucleic Acids Res.
Marc A. van Driel, K. Cuelenaere, P. P. C. W. Kemmeren, Jack A. M. Leunissen, Han G. Brunner, Gert Vriend
2003 J jnl
Bioinform.
Jack A. M. Leunissen
2002 J jnl
Nucleic Acids Res.
Björn M. Ursing, Frank H. J. van Enckevort, Jack A. M. Leunissen, Roland J. Siezen
2001 J jnl
Silico Biol.
Björn M. Ursing, Frank H. J. van Enckevort, Jack A. M. Leunissen, Roland J. Siezen
2000 J jnl
Bioinform.
Antoine H. C. van Kampen, Barbera D. C. van Schaik, Erwin Pauws, E. M. C. Michiels, J. M. Ruijter, H. N. Caron, Rogier Versteeg, S. H. Heisterkamp, Jack A. M. Leunissen, Frank Baas, M. van der Mee
1993 J jnl
J. Chem. Inf. Comput. Sci.
Ad H. M. Thiers, Jack A. M. Leunissen, Todd M. Miller, G. Schaftenaar, Jan H. Noordik
docs/new_database_schema.md
← Index docs/new_database_schema.md markdown

## LLIL function

| Field Name | Field Type | Description |
|-------------|-------------|-------------|
| function_type | string | The inferred type of the analyzed function, determined by the FunctionTypeAnalysis module (e.g., standard, library, thunk). |
| sha256_llil | string | SHA-256 hash computed from the Low-Level Intermediate Language (LLIL) instructions of the function. |
| ssdeep_llil | string | Fuzzy hash (ssdeep) of the LLIL instruction sequence, used for similarity detection. |
| tlsh_llil | string | TLSH (Trend Locality Sensitive Hash) value of the LLIL instructions, used for approximate matching and similarity comparison. |
| instructions_types_llil | list[string] | List of unique LLIL instruction types (e.g., arithmetic, control flow, memory operations). |
| control_flow_count_llil | integer | Number of control flow instructions in the LLIL representation (e.g., branches, jumps, calls). |
| memory_access_pattern_llil | dict | Patterns of memory access operations detected in the LLIL code (e.g., loads, stores, stack operations). |
| register_usage | dict | Summary of register usage, indicating which registers are read and written in the function. |
| total_reg_reads | integer | Total number of register read operations in the LLIL code. |
| total_reg_written | integer | Total number of register write operations in the LLIL code. |
| data_references_count | integer | Number of data references in the LLIL code (e.g., constants, global variables). |
| max_block_size | integer | Size of the largest basic block in the LLIL representation, measured in number of instructions. |
| num_calls | integer | Total number of function call instructions present in the LLIL code. |
| stack_size | integer | Estimated stack size used by the function, inferred from LLIL analysis. |


## CFG level

| Field Name          | Field Type    | Description                                                                                                                               |
|---------------------|---------------|-------------------------------------------------------------------------------------------------------------------------------------------|
| block_id            | integer       | Unique identifier for the basic block within the function (block_instructions + str(block.start) + str(block.end) + str(function.start)). |
| function_address    | integer       | Starting memory address of the parent function containing this block.                                                                     |
| block_start_address | integer       | Starting address of the basic block in memory.                                                                                            |
| block_end_address   | integer       | Ending address of the basic block in memory.                                                                                              |
| block_size          | integer       | Size of the basic block in bytes (computed as end - start).                                                                               |
| instructions_count  | integer       | Number of instructions contained in the basic block.                                                                                      |
| block_instructions  | string        | MD5 hash of the block's instruction sequence, used for integrity or similarity checks.                                                    |
| predecessor_blocks  | list[u64]     | List of addresses or IDs of predecessor blocks in the control flow graph (CFG).                                                           |
| successor_blocks    | list[u64]     | List of addresses or IDs of successor blocks in the CFG.                                                                                  |
| depth               | integer       | Depth level of the block in the control flow graph, starting from the entry block.                                                        |
| position            | integer       | Sequential position or index of the block within the function’s block map.                                                                |
| branch_type         | string        | Type of branch ending the block (e.g., conditional, unconditional, call, return).                                                         |
| block_type          | string        | Classification of the block (e.g., entry, exit, loop header, regular).                                                                    |
| flags               | dict          | Metadata or attributes extracted from the block (e.g., specific behavior or conditions).                                                  |
| dominators          | list[integer] | List of block addresses or IDs that dominate this block in the control flow graph.                                                        |
| post_dominators     | list[integer] | List of block addresses or IDs that post-dominate this block in the control flow graph.                                                   |
 | measures            | list[tuples]  | List of measures to be defined                                                                                                            |

## Disassembly

| Field Name | Field Type | Description |
|-------------|-------------|-------------|
| disassembled_function_hash | string | SHA-256 hash of the disassembled function string, used as a unique identifier. |
| disassembled_function | string | The disassembled function including instruction addresses. |
| disassembled_function_no_addresses | string | The disassembled function without instruction addresses, containing only the instruction mnemonics and operands. |
| disassembled_function_name | string | The name of the analyzed function. |
| disassembled_function_address | integer | The starting memory address of the disassembled function. |
| instructions_count | integer | Total number of instructions within the disassembled function. |
| function_type | string | The inferred type of the function as determined by the FunctionTypeAnalysis module (e.g., standard, library, thunk). |
| instructions_types | list[string] | List of unique instruction types (e.g., arithmetic, logic, control flow, memory). |
| control_flow_count | integer | Number of control flow instructions (e.g., jumps, calls, returns). |
| memory_access_pattern | dict | Patterns of memory access operations detected in the function (e.g., loads, stores, stack operations). |
| register_usage | dict | Summary of register usage, showing which registers are read from or written to. |
| data_references_count | integer | Count of data references made by the function (e.g., global variables or constants). |
| max_block_size | integer | The size of the largest basic block (in number of instructions). |
| num_calls | integer | Total number of function call instructions. |
| stack_size | integer | Estimated stack size used by the function. |

## Decompilation

| Field Name | Field Type | Description |
|-------------|-------------|-------------|
| decompiled_function_hash | string | SHA-256 hash of the decompiled function code, used as a unique identifier. |
| decompiled_function | string | The decompiled function source code in high-level representation. |
| decompiled_function_name | string | The name of the decompiled function. |
| decompiled_function_prototype | string | The function prototype, including return type, name, and parameters. |
| decompiled_function_address | integer | The starting memory address of the decompiled function. |
| function_type | string | The inferred function type from the FunctionTypeAnalysis module (e.g., standard, library, thunk). |
| functions_caller | list[string] | List of functions that call this function (incoming call references). |
| functions_call | list[string] | List of functions called by this function (outgoing call references). |
| flattened_score | float | Score representing the degree of control-flow flattening detected in the function. |
| mba_score | float | Score representing the presence or intensity of mixed boolean arithmetic (MBA) obfuscation patterns. |