Jaap A. Kaandorp

31 papers A 1B 2C 1Misc 3Journal 17Unranked 5

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Studying gastrulation by invagination: The bending of a cell sheet by mechanical cell properties using 3D deformable cell based simulations. PLoS Comput. Biol. Roland M. Dries, Kim Y. Renders, Jaap A. Kaandorp
2018	J	`jnl`	Morphogenesis in robot swarms. Sci. Robotics Daniel Carrillo-Zapata, Noemí Carranza, Xavier Diego, Fredrik Jansson, Jaap A. Kaandorp, Sabine Hauert, James Sharpe
2017	J	`jnl`	Scatter Search Applied to the Inference of a Development Gene Network. Comput. Amir Masoud Abdol, Damjan Cicin-Sain, Jaap A. Kaandorp, Anton Crombach
2015	J	`jnl`	Analysis of a spatial gene expression database for sea anemone Nematostella vectensis during early development. BMC Syst. Biol. Daniel Botman, Fredrik Jansson, Eric Röttinger, Mark Q. Martindale, Johann de Jong, Jaap A. Kaandorp
2015	J	`jnl`	Kilombo: a Kilobot simulator to enable effective research in swarm robotics. CoRR Fredrik Jansson, Matthew Hartley, Martin Hinsch, Ivica Slavkov, Noemí Carranza, Tjelvar S. G. Olsson, Roland M. Dries, Johanna H. Grönqvist, Athanasius F. M. Marée, James Sharpe, Jaap A. Kaandorp, Verônica A. Grieneisen
2014	J	`jnl`	Understanding the Sub-Cellular Dynamics of Silicon Transportation and Synthesis in Diatoms Using Population-Level Data and Computational Optimization. PLoS Comput. Biol. Narjes Javaheri, Roland Dries, Jaap A. Kaandorp
2013	J	`jnl`	Modelling Growth and Form of the Scleractinian Coral PLoS Comput. Biol. Nol Chindapol, Jaap A. Kaandorp, Carolina Cronemberger, Tali Mass, Amatzia Genin
2012	J	`jnl`	Geometric Theory Predicts Bifurcations in Minimal Wiring Cost Trees in Biology Are Flat. PLoS Comput. Biol. Yihwa Kim, Robert Sinclair, Nol Chindapol, Jaap A. Kaandorp, Erik De Schutter
2012	C	`conf`	Multi-scale Modeling of Gene Regulation of Morphogenesis. CiE Jaap A. Kaandorp, Daniel Botman, Carlos Tamulonis, Roland Dries
2009	J	`jnl`	Inferring Drosophila gap gene regulatory network: a parameter sensitivity and perturbation analysis. BMC Syst. Biol. Yves Fomekong-Nanfack, Marten Postma, Jaap A. Kaandorp
2008	—	`conf`	Simulating Complex Calcium-Calcineurin Signaling Network. ICCS (3) Jiangjun Cui, Jaap A. Kaandorp
2008	J	`jnl`	Simulating in vitro transcriptional response of zinc homeostasis system in Escherichia coli. BMC Syst. Biol. Jiangjun Cui, Jaap A. Kaandorp, Catherine M. Lloyd
2007	J	`jnl`	Computational methods for diffusion-influenced biochemical reactions. Bioinform. Maciej Dobrzynski, Jordi Vidal Rodríguez, Jaap A. Kaandorp, Joke G. Blom
2007	J	`jnl`	Efficient parameter estimation for spatio-temporal models of pattern formation: case study of Bioinform. Yves Fomekong-Nanfack, Jaap A. Kaandorp, Joke G. Blom
2006	B	`conf`	An Interactive Visualization System for Quantifying Coral Structures. EuroVis Krzysztof Jakub Kruszynski, Robert van Liere, Jaap A. Kaandorp
2006	J	`jnl`	Problem-Solving Environments for Biological Morphogenesis. Comput. Sci. Eng. Roeland Merks, Alfons G. Hoekstra, Jaap A. Kaandorp, Peter M. A. Sloot, Paulien Hogeweg
2006	J	`jnl`	Spatial stochastic modelling of the phosphoenolpyruvate-dependent phosphotransferase (PTS) pathway in Bioinform. Jordi Vidal Rodríguez, Jaap A. Kaandorp, Maciej Dobrzynski, Joke G. Blom
2003	Misc	`conf`	A Problem Solving Environment for Modelling Stony Coral Morphogenesis. International Conference on Computational Science Roeland Merks, Alfons G. Hoekstra, Jaap A. Kaandorp, Peter M. A. Sloot
2003	Misc	`conf`	Modelling Developmental Regulatory Networks. International Conference on Computational Science Tommy Krul, Jaap A. Kaandorp, Joke G. Blom
2002	Misc	`conf`	Spontaneous Branching in a Polyp Oriented Model of Stony Coral Growth. International Conference on Computational Science (1) Roeland Merks, Alfons G. Hoekstra, Jaap A. Kaandorp, Peter M. A. Sloot
2001	J	`jnl`	Particle based modelling methods applied in biology. Future Gener. Comput. Syst. Jaap A. Kaandorp, Shay Gueron
2001	—	`book`	The algorithmic beauty of seaweeds, sponges and corals. Jaap A. Kaandorp, Janet E. Kübler
2000	—	`conf`	The modelling of growing natural forms. Eurographics (Tutorials) Huw Jones, Jaap A. Kaandorp
1999	B	`conf`	Distributed Simulation with Cellular Automata: Architecture and Applications. SOFSEM Peter M. A. Sloot, Jaap A. Kaandorp, Alfons G. Hoekstra, Benno J. Overeinder
1999	—	`conf`	GEOPROVE: Geometric Probes for Virtual Environments. HPCN Europe Robert G. Belleman, Jaap A. Kaandorp, D. Dijkman, Peter M. A. Sloot
1998	J	`jnl`	A virtual environment for the exploration of diffusion and flow phenomena in complex geometries. Future Gener. Comput. Syst. Robert G. Belleman, Jaap A. Kaandorp, Peter M. A. Sloot
1998	J	`jnl`	EURO-VR Mini-conference '97: Virtual reality in industry and research. Future Gener. Comput. Syst. Jaap A. Kaandorp
1996	A	`conf`	A Parallel Cellular Genetic Algorithm Used in Finite Element Simulation. PPSN Arjen Schoneveld, Jan F. de Ronde, Peter M. A. Sloot, Jaap A. Kaandorp
1994	—	`book`	Fractal modelling - growth and form in biology. Jaap A. Kaandorp
1987	—	`conf`	Fractals (Mathematics, Programming and Applications). Advances in Computer Graphics H. A. Lauwerier, Jaap A. Kaandorp
1987	—	`conf`	Interactive Generation of Fractal Objects. Eurographics Jaap A. Kaandorp