Jaak Vilo

40 papers A 4B 4C 2Misc 1Journal 21Unranked 8
YearRankTypeTitle / Venue / Authors
2025 J jnl
Repeatable process for extracting health data from HL7 CDA documents.
J. Biomed. Informatics
Harry-Anton Talvik, Marek Oja, Sirli Tamm, Kerli Mooses, Dage Särg, Marcus Lõo, Õie Renata Siimon, Hendrik Suvalov, Raivo Kolde, Jaak Vilo, Sulev Reisberg, Sven Laur
2024 J jnl
Markov modeling for cost-effectiveness using federated health data network.
J. Am. Medical Informatics Assoc.
Markus Haug, Marek Oja, Maarja Pajusalu, Kerli Mooses, Sulev Reisberg, Jaak Vilo, Antonio Fernández Giménez, Thomas Falconer, Ana Danilovic, Filip Maljkovic, Dalia Dawoud, Raivo Kolde
2023 J jnl
g:Profiler - interoperable web service for functional enrichment analysis and gene identifier mapping (2023 update).
Nucleic Acids Res.
Liis Kolberg, Uku Raudvere, Ivan Kuzmin, Priit Adler, Jaak Vilo, Hedi Peterson
2020 J jnl
PAWER: protein array web exploreR.
BMC Bioinform.
Dmytro Fishman, Ivan Kuzmin, Priit Adler, Jaak Vilo, Hedi Peterson
2020 J jnl
gprofiler2 - an R package for gene list functional enrichment analysis and namespace conversion toolset g:Profiler.
F1000Research
Liis Kolberg, Uku Raudvere, Ivan Kuzmin, Jaak Vilo, Hedi Peterson
2019 J jnl
g: Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update).
Nucleic Acids Res.
Uku Raudvere, Liis Kolberg, Ivan Kuzmin, Tambet Arak, Priit Adler, Hedi Peterson, Jaak Vilo
2016 J jnl
g: Profiler - a web server for functional interpretation of gene lists (2016 update).
Nucleic Acids Res.
Jüri Reimand, Tambet Arak, Priit Adler, Liis Kolberg, Sulev Reisberg, Hedi Peterson, Jaak Vilo
2016 J jnl
seqlm: an MDL based method for identifying differentially methylated regions in high density methylation array data.
Bioinform.
Raivo Kolde, Kaspar Märtens, Kaie Lokk, Sven Laur, Jaak Vilo
2015 J jnl
ClustVis: a web tool for visualizing clustering of multivariate data using Principal Component Analysis and heatmap.
Nucleic Acids Res.
Tauno Metsalu, Jaak Vilo
2015 J jnl
FUN-L: gene prioritization for RNAi screens.
Bioinform.
Jonathan G. Lees, Jean-Karim Hériché, Ian Morilla, José María Fernández, Priit Adler, Martin Krallinger, Jaak Vilo, Alfonso Valencia, Jan Ellenberg, Juan A. G. Ranea, Christine A. Orengo
2015 J jnl
GOsummaries: an R Package for Visual Functional Annotation of Experimental Data.
F1000Research
Raivo Kolde, Jaak Vilo
2013 J jnl
A new way to protect privacy in large-scale genome-wide association studies.
Bioinform.
Liina Kamm, Dan Bogdanov, Sven Laur, Jaak Vilo
2012 B conf
Fraud Detection: Methods of Analysis for Hypergraph Data.
ASONAM
Anna Leontjeva, Konstantin Tretyakov, Jaak Vilo, Taavi Tamkivi
2012 J jnl
Robust rank aggregation for gene list integration and meta-analysis.
Bioinform.
Raivo Kolde, Sven Laur, Priit Adler, Jaak Vilo
2011 A conf
Fast fully dynamic landmark-based estimation of shortest path distances in very large graphs.
CIKM
Konstantin Tretyakov, Abel Armas-Cervantes, Luciano García-Bañuelos, Jaak Vilo, Marlon Dumas
2011 J jnl
g: Profiler - a web server for functional interpretation of gene lists (2011 update).
Nucleic Acids Res.
Jüri Reimand, Tambet Arak, Jaak Vilo
2010 — conf
An Evolutionary Model of DNA Substring Distribution.
Algorithms and Applications
Meelis Kull, Konstantin Tretyakov, Jaak Vilo
2010 B conf
Information Retrieval of Word Form Variants in Spoken Language Corpora Using Generalized Edit Distance.
LREC
Siim Orasmaa, Reina Käärik, Jaak Vilo, Tiit Hennoste
2010 — conf
National Programme for Estonian Language Technology: a Pre-final Summary.
Baltic HLT
Einar Meister, Jaak Vilo, Neeme Kahusk
2009 J jnl
VisHiC - hierarchical functional enrichment analysis of microarray data.
Nucleic Acids Res.
Darya Krushevskaya, Hedi Peterson, Jüri Reimand, Meelis Kull, Jaak Vilo
2008 J jnl
Fast approximate hierarchical clustering using similarity heuristics.
BioData Min.
Meelis Kull, Jaak Vilo
2008 Misc conf
Flexible Database Platform for Biomedical Research with Multiple User Interfaces and a Universal Query Engine.
DB&IS
Margus Jäger, Liina Kamm, Darja Krushevskaja, Harry-Anton Talvik, Janno Veldemann, Andres Vilgota, Jaak Vilo
2008 J jnl
GraphWeb: mining heterogeneous biological networks for gene modules with functional significance.
Nucleic Acids Res.
Jüri Reimand, Laur Tooming, Hedi Peterson, Priit Adler, Jaak Vilo
2008 J jnl
KEGGanim: pathway animations for high-throughput data.
Bioinform.
Priit Adler, Jüri Reimand, Jürgen Jänes, Raivo Kolde, Hedi Peterson, Jaak Vilo
2008 B conf
Strengthening the Estonian Language Technology.
LREC
Einar Meister, Jaak Vilo
2007 J jnl
g: Profiler - a web-based toolset for functional profiling of gene lists from large-scale experiments.
Nucleic Acids Res.
Jüri Reimand, Meelis Kull, Hedi Peterson, Jaanus Hansen, Jaak Vilo
2004 J jnl
Expression Profiler: next generation - an online platform for analysis of microarray data.
Nucleic Acids Res.
Misha Kapushesky, Patrick Kemmeren, Aedín C. Culhane, Steffen Durinck, Jan Ihmels, Christine Körner, Meelis Kull, Aurora Torrente, Ugis Sarkans, Jaak Vilo, Alvis Brazma
2003 J jnl
ArrayExpress - a public repository for microarray gene expression data at the EBI.
Nucleic Acids Res.
Alvis Brazma, Helen E. Parkinson, Ugis Sarkans, Mohammadreza Shojatalab, Jaak Vilo, Niran Abeygunawardena, Ele Holloway, Misha Kapushesky, Patrick Kemmeren, Gonzalo Garcia Lara, Ahmet Oezcimen, Philippe Rocca-Serra, Susanna-Assunta Sansone
2002 C conf
Building and analysing genome-wide gene disruption networks.
ECCB
Johan Rung, Thomas Schlitt, Alvis Brazma, Karlis Freivalds, Jaak Vilo
2002 C conf
Correlating gene promoters and expression in gene disruption experiments.
ECCB
Kimmo Palin, Esko Ukkonen, Alvis Brazma, Jaak Vilo
2001 — conf
Prediction of the coupling specificity of G protein coupled receptors to their G proteins.
ISMB (Supplement of Bioinformatics)
Steffen Möller, Jaak Vilo, Michael D. R. Croning
2000 A conf
Mining for Putative Regulatory Elements in the Yeast Genome Using Gene Expression Data.
ISMB
Jaak Vilo, Alvis Brazma, Inge Jonassen, Alan J. Robinson, Esko Ukkonen
1998 — conf
Pattern Discovery in Biosequences.
ICGI
Alvis Brazma, Inge Jonassen, Jaak Vilo, Esko Ukkonen
1998 — conf
Predicting gene regulatory elements from their expression data in the complete yeast genome.
German Conference on Bioinformatics
Alvis Brazma, Inge Jonassen, Jaak Vilo, Esko Ukkonen
1997 A conf
Data Mining for Regulatory Elements in Yeast Genome.
ISMB
Alvis Brazma, Jaak Vilo, Esko Ukkonen, Kimmo Valtonen
1997 — conf
Finding transcription factor binding site combinations in the yeast genome.
German Conference on Bioinformatics
Alvis Brazma, Jaak Vilo, Esko Ukkonen
1996 A conf
Discovering Patterns and Subfamilies in Biosequences.
ISMB
Alvis Brazma, Inge Jonassen, Esko Ukkonen, Jaak Vilo
1996 B conf
Discovering Unbounded Unions of Regular Pattern Languages from Positive Examples (Extended Abstract).
ISAAC
Alvis Brazma, Esko Ukkonen, Jaak Vilo
1994 — conf
An ALgorithm for Learning Hierarchical Classifiers.
ECML
Jyrki Kivinen, Heikki Mannila, Esko Ukkonen, Jaak Vilo
1992 — conf
Implementing Attribute Grammars by Computational Models.
PLILP
Jaak Vilo