J. Douglas Bremner

15 papers C 4Misc 1Journal 5Unranked 5
YearRankTypeTitle / Venue / Authors
2026 J jnl
IEEE Trans. Biomed. Eng.
Asim Hossain Gazi, Sungtae An, Jesus Antonio Sanchez-Perez, Michael Chan, Mohammad Nikbakht, David Jimmy Lin, Shlok Natarajan, Kyle A. Johnsen, J. Douglas Bremner, Jin-Oh Hahn, Omer T. Inan, Christopher J. Rozell
2026 J jnl
ACM Trans. Comput. Heal.
Afra Nawar, Asim Hossain Gazi, Michael Chan, Jesus Antonio Sanchez-Perez, Farhan N. Rahman, Carrie Ziegler, Obada Daaboul, George Haddad, Omar A. Al-Abboud, Hashir Ahmed, J. Douglas Bremner, Arshed A. Quyyumi, Viola Vaccarino, Omer T. Inan, Amit J. Shah
2025 C conf
BSN
Michael J. Cho, Vikram Abbaraju, Farhan N. Rahman, Jeffrey C. Liu, Afra Nawar, Cali E. Murray, Yi Yang, Joshua Chiok, Jaiyoun Choi, Rachel Bull, Lucy Shallenberger, Viola Vaccarino, Amit J. Shah, J. Douglas Bremner, Omer T. Inan
2024 conf
EMBC
Vikram Abbaraju, Syed Khairul Bashar, Afra Nawar, Farhan N. Rahman, Jaiyoun Choi, Tamara P. Lambert, Asim Hossain Gazi, Anna B. Harrison, Madeline R. Robinson, Hewitt Mesfin, Trinity A. Gray, Kellen Mermin-Bunnell, Nora Jacquement, Nikolina Tomic, Justine W. Welsh, Santosh Patel, Viola Vaccarino, Amit J. Shah, J. Douglas Bremner, Omer T. Inan
2024 J jnl
IEEE J. Biomed. Health Informatics
Asim Hossain Gazi, Jesus Antonio Sanchez-Perez, Georgia L. Saks, Erick Andres Perez-Alday, Ammer Haffar, Hashir Ahmed, Duaa Herraka, Nitya Tarlapally, Nicholas L. Smith, J. Douglas Bremner, Amit J. Shah, Omer T. Inan, Viola Vaccarino
2024 C conf
BSN
Asim Hossain Gazi, Michael Chan, Hao-Lun Hsu, J. Douglas Bremner, Christopher J. Rozell, Omer T. Inan
2023 conf
EMBC
Asim Hossain Gazi, Jesus Antonio Sanchez-Perez, Shlok Natarajan, Michael Chan, Mohammad Nikbakht, David Jimmy Lin, J. Douglas Bremner, Jin-Oh Hahn, Omer T. Inan, Christopher J. Rozell
2023 C conf
BSN
Asim Hossain Gazi, Jesus Antonio Sanchez-Perez, Michael Chan, Mohammad Nikbakht, David Jimmy Lin, Shlok Natarajan, J. Douglas Bremner, Jin-Oh Hahn, Omer T. Inan, Christopher J. Rozell
2022 J jnl
IEEE Trans. Biomed. Eng.
Asim Hossain Gazi, Matthew T. Wittbrodt, Anna B. Harrison, Srirakshaa Sundararaj, Nil Z. Gurel, Jonathon A. Nye, Amit J. Shah, Viola Vaccarino, J. Douglas Bremner, Omer T. Inan
2022 conf
BHI
Asim Hossain Gazi, Anna B. Harrison, Tamara P. Lambert, Malik Obideen, Justine W. Welsh, Viola Vaccarino, Amit J. Shah, Sudie E. Back, Christopher J. Rozell, J. Douglas Bremner, Omer T. Inan
2021 conf
EMBC
Asim Hossain Gazi, Srirakshaa Sundararaj, Anna B. Harrison, Nil Z. Gurel, Matthew T. Wittbrodt, Mhmtjamil Alkhalaf, Majd Soudan, Oleksiy Levantsevych, Ammer Haffar, Amit J. Shah, Viola Vaccarino, J. Douglas Bremner, Omer T. Inan
2021 conf
BHI
Asim Hossain Gazi, Srirakshaa Sundararaj, Anna B. Harrison, Nil Z. Gurel, Matthew T. Wittbrodt, Amit J. Shah, Viola Vaccarino, J. Douglas Bremner, Omer T. Inan
2020 J jnl
IEEE J. Biomed. Health Informatics
Nil Z. Gurel, Matthew T. Wittbrodt, Hewon Jung, Stacy L. Ladd, Amit J. Shah, Viola Vaccarino, J. Douglas Bremner, Omer T. Inan
2019 Misc conf
AMIA
Nil Z. Gurel, Asim Hossain Gazi, Kristine L. Scott, Matthew T. Wittbrodt, Amit J. Shah, Viola Vaccarino, J. Douglas Bremner, Omer T. Inan
2018 C conf
BSN
Nil Z. Gurel, Md Mobashir Hasan Shandhi, J. Douglas Bremner, Viola Vaccarino, Stacy L. Ladd, Lucy Shallenberger, Amit J. Shah, Omer T. Inan
redb/extractors/detectiteasy.py
← Index redb/extractors/detectiteasy.py python
import inspect
from pprint import pprint
import subprocess
import json
from typing import Any
from datetime import datetime, timezone
import os
from dotenv import load_dotenv

from redb.extractors.enum import Tag
from redb.models.dataclasses import DIEinfo
from redb.extractors.extractor import Extractor

load_dotenv(override=True)

class DIEExtractor(Extractor):

    def __init__(
        self,
        filepath,
        log,
        exporters=None,
        index_prefix=None,
        elastic_index=None,
        known_benign=False,
        known_malicious=False,
        precomputed_hashes=None,
    ):
        super().__init__(
            filepath, log, exporters, index_prefix, elastic_index, known_benign, known_malicious,
            precomputed_hashes=precomputed_hashes
        )
        self.log.debug(inspect.currentframe().f_code.co_name)
        self.die_info = None
        self.die_info_dict = {}
        self.elastic_index = self.index_prefix + "-die"

    def _recursive_entry(self, die_dict, master_key):
        self.log.debug(inspect.currentframe().f_code.co_name)
        if master_key:
            self.die_info_dict[master_key] = {}
        else:
            self.die_info_dict = {}
        for value in die_dict:
            if "type" in value:
                type_key = value["type"].lower().replace(" ", "_")
                name = value.get("name", "")
                version = f"({value.get('version')})" if value.get("version") else ""
                info = f"[{value.get('info')}]" if value.get("info") else ""

                if master_key:
                    self.die_info_dict[master_key][type_key] = f"{name}"
                    self.die_info_dict[master_key][f'{type_key}(full)'] = f"{name}{version}{info}"
                else:
                    self.die_info_dict[type_key] = f"{name}"
                    self.die_info_dict[f'{type_key}(full)'] = f"{name}{version}{info}"

            elif "parentfilepart" in value:
                child_key = (
                    value["parentfilepart"].lower().replace(" ", "_")
                    + "."
                    + value["filetype"].lower().replace(" ", "_")
                )
                if master_key:
                    self._recursive_entry(value["values"], f"{master_key}.{child_key}")
                else:
                    self._recursive_entry(value["values"], f"{child_key}")

    def _extract_dieinfo(self):
        """
        Execute a command-line binary with arguments and parse its JSON output.

        :param command: The command or path to the binary to execute
        :param args: Additional arguments to pass to the command
        :return: Parsed JSON output as a Python object
        """
        self.log.debug(inspect.currentframe().f_code.co_name)

        # Construct the full command
        # command = "nfdc" # UNCOMMENT FOR PROD
        # command = "/Users/p4c0/_tools/NFD.app/Contents/MacOS/nfdc" # COMMENT FOR TESTING ON MAC
        command = os.getenv("DIE_PATH")
        args = ["-durj", self.filepath]
        full_command = [command] + list(args)
        TIMEOUT = int(os.getenv("DIE_TIMEOUT", "180"))

        try:
            # Execute the command and capture its output
            result = subprocess.run(
                full_command,
                capture_output=True,
                text=True,
                check=True,
                timeout=TIMEOUT,
            )

            # Parse the JSON output
            nfdc_output = json.loads(result.stdout)

            # Extract the DIE information from the json output
            for die_entry in nfdc_output["detects"]:
                if die_entry["parentfilepart"] == "Header":
                    master_key = (
                        die_entry["parentfilepart"].lower().replace(" ", "_")
                        + "."
                        + die_entry["filetype"].lower().replace(" ", "_")
                    )
                    self._recursive_entry(die_entry["values"], None)

            # pprint(json.dumps(self.die_info_dict, indent=2)) #debug
            self.die_info = DIEinfo(result.stdout, self.die_info_dict)
            self.log.debug(f"NFDC-DIE JSON dump: todo")
        except subprocess.TimeoutExpired:
            self.log.error(f"The DIE command timed out after {TIMEOUT} seconds")
            return None
        except subprocess.CalledProcessError as e:
            self.log.error(f"Error executing DIE command: {e}")
            self.log.error(f"Command output (stderr): {e.stderr}")
            return None
        except json.JSONDecodeError as e:
            self.log.error(f"Error parsing DIE JSON output: {e}")
            self.log.error(f"Raw output: {result.stdout}")
            return None

    def prepare_export_data(self, exporter_type: str) -> Any:
        if exporter_type == "ElasticsearchExporter":
            return self.die_info
        elif exporter_type == "ClickHouseExporter":
            # Convert DIE info to JSON string
            die_info_json = json.dumps(self.die_info_dict)
            
            data = [[
                self.sha256,
                self.md5,
                self.sha1,
                die_info_json,
                datetime.now(timezone.utc)
            ]]
            
            column_names = [
                'sha256', 'md5', 'sha1', 'die_info', 'analysis_date'
            ]
            
            column_type_names = [
                'String', 'String', 'String', 'JSON', 'DateTime64(3, \'UTC\')'
            ]
            
            return (data, column_names, column_type_names)

    def get_clickhouse_table(self) -> str:
        return "redb_die"

    def extract(self):
        self.log.debug(inspect.currentframe().f_code.co_name)
        try:
            self._extract_dieinfo()
            
            # Check if there's a packer in the DIE results
            is_packed = False
            if self.die_info_dict:
                # Check if 'packer' exists in the DIE results
                is_packed = bool(self.die_info_dict.get('packer'))
            
            return self.die_info  # Return the extracted data instead of exporting directly
        except Exception as e:
            self.log.error(f"Error extracting DIE information: {e}")
            return None

    def tag(self):
        return Tag.DIEC.value