Ivo Grosse

54 papers A* 1A 2B 1C 1Journal 36Unranked 12
YearRankTypeTitle / Venue / Authors
2021 J jnl
tSFM 1.0: tRNA Structure-Function Mapper.
Bioinform.
Travis J. Lawrence, Fatemeh Hadi-Nezhad, Ivo Grosse, David H. Ardell
2019 J jnl
Algorithms for learning parsimonious context trees.
Mach. Learn.
Ralf Eggeling, Ivo Grosse, Mikko Koivisto
2019 J jnl
Prediction of regulatory targets of alternative isoforms of the epidermal growth factor receptor in a glioblastoma cell line.
BMC Bioinform.
Claus Weinholdt, Henri Wichmann, Johanna Kotrba, David H. Ardell, Matthias Kappler, Alexander W. Eckert, Dirk Vordermark, Ivo Grosse
2018 J jnl
Optimal Block-Based Trimming for Next Generation Sequencing.
IEEE ACM Trans. Comput. Biol. Bioinform.
Ivo Hedtke, Ioana M. Lemnian, Ivo Grosse, Matthias Müller-Hannemann
2018 J jnl
myTAI: evolutionary transcriptomics with R.
Bioinform.
Hajk-Georg Drost, Alexander Gabel, Jialin Liu, Marcel Quint, Ivo Grosse
2017 J jnl
Combining phylogenetic footprinting with motif models incorporating intra-motif dependencies.
BMC Bioinform.
Martin Nettling, Hendrik Treutler, Jesús Cerquides, Ivo Grosse
2017 J jnl
InMoDe: tools for learning and visualizing intra-motif dependencies of DNA binding sites.
Bioinform.
Ralf Eggeling, Ivo Grosse, Jan Grau
2017 J jnl
Unrealistic phylogenetic trees may improve phylogenetic footprinting.
Bioinform.
Martin Nettling, Hendrik Treutler, Jesús Cerquides, Ivo Grosse
2016 J jnl
Bioinformatics challenges of next generation sequencing.
it Inf. Technol.
Ivo Grosse, Katrin Hoffmann
2015 J jnl
BiNChE: A web tool and library for chemical enrichment analysis based on the ChEBI ontology.
BMC Bioinform.
Pablo A. Moreno, Stephan Beisken, Bhavana Harsha, Venkatesh Muthukrishnan, Ilinca Tudose, Adriano Dekker, Stefanie Dornfeldt, Franziska Taruttis, Ivo Grosse, Janna Hastings, Steffen Neumann, Christoph Steinbeck
2015 J jnl
Computational Recognition of RNA Splice Sites by Exact Algorithms for the Quadratic Traveling Salesman Problem.
Comput.
Anja Fischer, Frank Fischer, Gerold Jäger, Jens Keilwagen, Paul Molitor, Ivo Grosse
2015 A* conf
Dealing with small data: On the generalization of context trees.
ICML
Ralf Eggeling, Mikko Koivisto, Ivo Grosse
2015 J jnl
DiffLogo: a comparative visualization of sequence motifs.
BMC Bioinform.
Martin Nettling, Hendrik Treutler, Jan Grau, Jens Keilwagen, Stefan Posch, Ivo Grosse
2015 J jnl
Inferring intra-motif dependencies of DNA binding sites from ChIP-seq data.
BMC Bioinform.
Ralf Eggeling, Teemu Roos, Petri Myllymäki, Ivo Grosse
2015 J jnl
PRROC: computing and visualizing precision-recall and receiver operating characteristic curves in R.
Bioinform.
Jan Grau, Ivo Grosse, Jens Keilwagen
2014 — conf
A general approach for discriminative de novo motif discovery from high-throughput data.
GCB
Jan Grau, Stefan Posch, Ivo Grosse, Jens Keilwagen
2014 J jnl
DRUMS: Disk Repository with Update Management and Select option for high throughput sequencing data.
BMC Bioinform.
Martin Nettling, Nils Thieme, Andreas Both, Ivo Grosse
2014 J jnl
Exact algorithms and heuristics for the Quadratic Traveling Salesman Problem with an application in bioinformatics.
Discret. Appl. Math.
Anja Fischer, Frank Fischer, Gerold Jäger, Jens Keilwagen, Paul Molitor, Ivo Grosse
2014 — conf
Explaining gene responses by linear modeling.
GCB
Yvonne Poeschl, Ivo Grosse, Andreas Gogol-Döring
2014 C conf
Explorative Analysis of Heterogeneous, Unstructured, and Uncertain Data - A Computer Science Perspective on Biodiversity Research.
DATA
Clemens Beckstein, Sebastian Böcker, Martin Bogdan, Helge Bruelheide, H. Martin Bücker, Joachim Denzler, Peter Dittrich, Ivo Grosse, Alexander Hinneburg, Birgitta König-Ries, Felicitas Löffler, Manja Marz, Matthias Müller-Hannemann, Martin Winter, Wolf Zimmermann
2014 — conf
On Optimal Read Trimming in Next Generation Sequencing and Its Complexity.
AlCoB
Ivo Hedtke, Ioana M. Lemnian, Matthias Müller-Hannemann, Ivo Grosse
2014 A conf
Robust learning of inhomogeneous PMMs.
AISTATS
Ralf Eggeling, Teemu Roos, Petri Myllymäki, Ivo Grosse
2013 J jnl
Bayesian Conditional Gaussian Network Classifiers with Applications to Mass Spectra Classification.
CoRR
Victor Bellon, Jesús Cerquides, Ivo Grosse
2013 J jnl
Dispom: a Discriminative de-novo Motif Discovery Tool Based on the Jstacs Library.
J. Bioinform. Comput. Biol.
Jan Grau, Jens Keilwagen, André Gohr, Ivan A. Paponov, Stefan Posch, Michael Seifert, Marc Strickert, Ivo Grosse
2013 — conf
Extended Sunflower Hidden Markov Models for the recognition of homotypic cis-regulatory modules}.
GCB
Ioana M. Lemnian, Ralf Eggeling, Ivo Grosse
2013 — conf
Inhomogeneous Parsimonious Markov Models.
ECML/PKDD (1)
Ralf Eggeling, André Gohr, Pierre-Yves Bourguignon, Edgar Wingender, Ivo Grosse
2012 J jnl
Functional microRNA targets in protein coding sequences.
Bioinform.
Martin Reczko, Manolis Maragkakis, Panagiotis Alexiou, Ivo Grosse, Artemis G. Hatzigeorgiou
2012 J jnl
Jstacs: A Java Framework for Statistical Analysis and Classification of Biological Sequences.
J. Mach. Learn. Res.
Jan Grau, Jens Keilwagen, André Gohr, Berit Haldemann, Stefan Posch, Ivo Grosse
2012 J jnl
Parsimonious Higher-Order Hidden Markov Models for Improved Array-CGH Analysis with Applications to
PLoS Comput. Biol.
Michael Seifert, André Gohr, Marc Strickert, Ivo Grosse
2011 J jnl
De-Novo Discovery of Differentially Abundant Transcription Factor Binding Sites Including Their Positional Preference.
PLoS Comput. Biol.
Jens Keilwagen, Jan Grau, Ivan A. Paponov, Stefan Posch, Marc Strickert, Ivo Grosse
2011 J jnl
Exploiting prior knowledge and gene distances in the analysis of tumor expression profiles with extended Hidden Markov Models.
Bioinform.
Michael Seifert, Marc Strickert, Alexander Schliep, Ivo Grosse
2010 J jnl
Apples and oranges: avoiding different priors in Bayesian DNA sequence analysis.
BMC Bioinform.
Jens Keilwagen, Jan Grau, Stefan Posch, Ivo Grosse
2010 — conf
Predicting miRNA targets utilizing an Extended Profile HMM.
GCB
Jan Grau, Daniel Arend, Ivo Grosse, Artemis G. Hatzigeorgiou, Jens Keilwagen, Manolis Maragkakis, Claus Weinholdt, Stefan Posch
2010 J jnl
Unifying generative and discriminative learning principles.
BMC Bioinform.
Jens Keilwagen, Jan Grau, Stefan Posch, Marc Strickert, Ivo Grosse
2010 J jnl
miRGen 2.0: a database of microRNA genomic information and regulation.
Nucleic Acids Res.
Panagiotis Alexiou, Thanasis Vergoulis, Martin Gleditzsch, George Prekas, Theodore Dalamagas, Molly Megraw, Ivo Grosse, Timos K. Sellis, Artemis G. Hatzigeorgiou
2009 — conf
Array-based Genome Comparison of Arabidopsis Ecotypes using Hidden Markov Models.
BIOSIGNALS
Michael Seifert, Ali Banaei, Jens Keilwagen, Michael Florian Mette, Andreas Houben, François Roudier, Vincent Colot, Ivo Grosse, Marc Strickert
2009 — ed.
German Conference on Bioinformatics 2009, 28th to 30th September 2009, Martin Luther University Halle-Wittenberg, Germany
GCB
Ivo Grosse, Steffen Neumann, Stefan Posch, Falk Schreiber, Peter F. Stadler
2009 J jnl
Utilizing gene pair orientations for HMM-based analysis of promoter array ChIP-chip data.
Bioinform.
Michael Seifert, Jens Keilwagen, Marc Strickert, Ivo Grosse
2008 — conf
Utilizing Promoter Pair Orientations for HMM-based Analysis of ChIP-chip Data.
German Conference on Bioinformatics
Michael Seifert, Jens Keilwagen, Marc Strickert, Ivo Grosse
2007 — conf
On the relevance of model orders to discriminative learning of Markov models.
LWA
Jan Grau, Jens Keilwagen, Ivo Grosse, Stefan Posch
2007 J jnl
Recognition of cis-Regulatory Elements with Vombat.
J. Bioinform. Comput. Biol.
Stefan Posch, Jan Grau, André Gohr, Irad E. Ben-Gal, Alexander E. Kel, Ivo Grosse
2007 — conf
Recognition of splice sites using maximum conditional likelihood.
LWA
Jens Keilwagen, Jan Grau, Stefan Posch, Ivo Grosse
2007 — conf
Supervised Posteriors for DNA-motif Classification.
German Conference on Bioinformatics
Jan Grau, Jens Keilwagen, Alexander E. Kel, Ivo Grosse, Stefan Posch
2007 J jnl
Using Data Warehouse Technology in Crop Plant Bioinformatics.
J. Integr. Bioinform.
Christian Künne, Ivo Grosse, Inge Matthies, Uwe Scholz, Tatjana Sretenovic-Rajicic, Nils Stein, Andreas Stephanik, Burkhard Steuernagel, Stephan Weise
2006 — conf
Data Structures for Genome Annotation, Alternative Splicing, and Validation.
DILS
Sven Mielordt, Ivo Grosse, Jürgen Kleffe
2006 J jnl
Meta-All: a system for managing metabolic pathway information.
BMC Bioinform.
Stephan Weise, Ivo Grosse, Christian Klukas, Dirk Koschützki, Uwe Scholz, Falk Schreiber, Björn H. Junker
2006 J jnl
VOMBAT: prediction of transcription factor binding sites using variable order Bayesian trees.
Nucleic Acids Res.
Jan Grau, Irad E. Ben-Gal, Stefan Posch, Ivo Grosse
2005 J jnl
CR-EST: a resource for crop ESTs.
Nucleic Acids Res.
Christian Künne, Matthias Lange, T. Funke, Heiko Miehe, Thomas Thiel, Ivo Grosse, Uwe Scholz
2005 J jnl
Identification of transcription factor binding sites with variable-order Bayesian networks.
Bioinform.
Irad E. Ben-Gal, Ayala Shani, André Gohr, Jan Grau, S. Arviv, Armin Shmilovici, Stefan Posch, Ivo Grosse
2004 J jnl
Comments on "linguistic features in eukaryotic genomes".
Complex.
Wentian Li, Ivo Grosse
2004 J jnl
Extreme Value Distribution Based Gene Selection Criteria for Discriminant Microarray Data Analysis Using Logistic Regression.
J. Comput. Biol.
Wentian Li, Fengzhu Sun, Ivo Grosse
2003 B conf
Gene selection criterion for discriminant microarray data analysis based on extreme value distributions.
RECOMB
Wentian Li, Ivo Grosse
2002 J jnl
Applications of Recursive Segmentation to the Analysis of DNA Sequences.
Comput. Chem.
Wentian Li, Pedro A. Bernaola-Galván, Fatameh Haghighi, Ivo Grosse
1997 A conf
DNA visual and analytic data mining.
IEEE Visualization
Patrick Hoffman, Georges G. Grinstein, Kenneth A. Marx, Ivo Grosse, Eugene Stanley