Ivo F. Sbalzarini

107 papers A 1B 5C 4Misc 1Journal 77Unranked 19

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Chemical Reaction Networks Learn Better than Spiking Neural Networks. CoRR Sophie Jaffard, Ivo F. Sbalzarini
2025	J	`jnl`	APR-CNN: Convolutional Neural Networks for the Adaptive Particle Representation of Large Microscopy Images. Trans. Mach. Learn. Res. Joel Jonsson, Bevan Leslie Cheeseman, Ivo F. Sbalzarini
2025	J	`jnl`	An Overview of Meshfree Collocation Methods. CoRR Tomás Halada, Serhii Yaskovets, Abhinav Singh, Ludek Benes, Pratik Suchde, Ivo F. Sbalzarini
2025	J	`jnl`	Data-efficient inverse design of spinodoid metamaterials. CoRR Max Rosenkranz, Markus Kästner, Ivo F. Sbalzarini
2025	J	`jnl`	Multivariate Newton Interpolation in Downward Closed Spaces Reaches the Optimal Geometric Approximation Rates for Bos-Levenberg-Trefethen Functions. CoRR Michael Hecht, Phil-Alexander Hofmann, Damar Wicaksono, Uwe Hernandez Acosta, Krzysztof Gonciarz, Jannik Kissinger, Vladimir Sivkin, Ivo F. Sbalzarini
2025	J	`jnl`	On the Computational Power of Particle Methods. Fundam. Informaticae Johannes Pahlke, Ivo F. Sbalzarini
2025	J	`jnl`	Robust variable selection for spatial point processes observed with noise. CoRR Dominik Sturm, Ivo F. Sbalzarini
2024	J	`jnl`	A high-order fully Lagrangian particle level-set method for dynamic surfaces. J. Comput. Phys. Lennart J. Schulze, Sachin K. Thekke Veettil, Ivo F. Sbalzarini
2024	—	`conf`	Evaluating Large Language Model Literature Reviews in Interdisciplinary Science: A Systems Biology Perspective. EKAW (Companion) Charvi Jain, Sahar Vahdati, Nandu Gopan, Ivo F. Sbalzarini, Jens Lehmann
2024	—	`conf`	Live and Interactive 3D Photomanipulation under the Microscope using Virtual Reality. CHI Extended Abstracts Jan Tiemann, Matthew McGinity, Ivo F. Sbalzarini, Ulrik Günther
2024	J	`jnl`	Proven Distributed Memory Parallelization of Particle Methods. CoRR Johannes Pahlke, Ivo F. Sbalzarini
2024	J	`jnl`	Proven Distributed Memory Parallelization of Particle Methods. ACM Trans. Parallel Comput. Johannes Pahlke, Ivo F. Sbalzarini
2024	J	`jnl`	Push-Forward Signed Distance Functions enable interpretable and robust continuous shape quantification. CoRR Roua Rouatbi, Juan Esteban Suarez, Ivo F. Sbalzarini
2023	J	`jnl`	A Distributed Algebra System for Time Integration on Parallel Computers. CoRR Abhinav Singh, Landfried Kraatz, Pietro Incardona, Ivo F. Sbalzarini
2023	J	`jnl`	A Meshfree Collocation Scheme for Surface Differential Operators on Point Clouds. J. Sci. Comput. Abhinav Singh, Alejandra Foggia, Pietro Incardona, Ivo F. Sbalzarini
2023	J	`jnl`	A Unifying Mathematical Definition of Particle Methods. IEEE Open J. Comput. Soc. Johannes Pahlke, Ivo F. Sbalzarini
2023	J	`jnl`	A high-order fully Lagrangian particle level-set method for dynamic surfaces. CoRR Lennart J. Schulze, Sachin K. Thekke Veettil, Ivo F. Sbalzarini
2023	J	`jnl`	A portable C++ library for memory and compute abstraction on multi-core CPUs and GPUs. Concurr. Comput. Pract. Exp. Pietro Incardona, Aryaman Gupta, Serhii Yaskovets, Ivo F. Sbalzarini
2023	J	`jnl`	Adaptive weighting of Bayesian physics informed neural networks for multitask and multiscale forward and inverse problems. J. Comput. Phys. Sarah Perez, Suryanarayana Maddu, Ivo F. Sbalzarini, Philippe Poncet
2023	J	`jnl`	An open-source pipeline for solving continuous reaction-diffusion models in image-based geometries of porous media. CoRR Justina Stark, Ivo F. Sbalzarini
2023	J	`jnl`	An open-source pipeline for solving continuous reaction-diffusion models in image-based geometries of porous media. J. Comput. Sci. Justina Stark, Ivo F. Sbalzarini
2023	J	`jnl`	Computational Power of Particle Methods. CoRR Johannes Pahlke, Ivo F. Sbalzarini
2023	B	`conf`	Efficient Raycasting of Volumetric Depth Images for Remote Visualization of Large Volumes at High Frame Rates. PacificVis Aryaman Gupta, Ulrik Günther, Pietro Incardona, Guido Reina, Steffen Frey, Stefan Gumhold, Ivo F. Sbalzarini
2023	J	`jnl`	Global Polynomial Level Sets for Numerical Differential Geometry of Smooth Closed Surfaces. SIAM J. Sci. Comput. Sachin K. Thekke Veettil, Gentian Zavalani, Uwe Hernandez Acosta, Ivo F. Sbalzarini, Michael Hecht
2023	J	`jnl`	Learning locally dominant force balances in active particle systems. CoRR Dominik Sturm, Suryanarayana Maddu, Ivo F. Sbalzarini
2023	—	`conf`	Parallel Compositing of Volumetric Depth Images for Interactive Visualization of Distributed Volumes at High Frame Rates. EGPGV@EuroVis Aryaman Gupta, Pietro Incardona, Anton Brock, Guido Reina, Steffen Frey, Stefan Gumhold, Ulrik Günther, Ivo F. Sbalzarini
2022	—	`conf`	A C++ Library for Memory Layout and Performance Portability of Scientific Applications. Euro-Par Workshops Pietro Incardona, Aryaman Gupta, Serhii Yaskovets, Ivo F. Sbalzarini
2022	J	`jnl`	Content-adaptive generation and parallel compositing of volumetric depth images for responsive visualization of large volume data. CoRR Aryaman Gupta, Pietro Incardona, Paul Hunt, Guido Reina, Steffen Frey, Stefan Gumhold, Ulrik Günther, Ivo F. Sbalzarini
2022	J	`jnl`	Corvo: Visualizing CellxGene Single-Cell Datasets in Virtual Reality. CoRR Luke Hyman, Ivo F. Sbalzarini, Stephen Quake, Ulrik Günther
2022	J	`jnl`	Design centering enables robustness screening of pattern formation models. Bioinform. Anastasia Solomatina, Alice Cezanne, Yannis Kalaidzidis, Marino Zerial, Ivo F. Sbalzarini
2022	J	`jnl`	Efficient Raycasting of View-Dependent Piecewise Constant Representations of Volumetric Data. CoRR Aryaman Gupta, Ulrik Günther, Pietro Incardona, Guido Reina, Steffen Frey, Stefan Gumhold, Ivo F. Sbalzarini
2022	J	`jnl`	Global Polynomial Level Sets for Numerical Differential Geometry of Smooth Closed Surfaces. CoRR Sachin K. Thekke Veettil, Gentian Zavalani, Uwe Hernandez Acosta, Ivo F. Sbalzarini, Michael Hecht
2022	J	`jnl`	Inverse Dirichlet weighting enables reliable training of physics informed neural networks. Mach. Learn. Sci. Technol. Suryanarayana Maddu, Dominik Sturm, Christian L. Müller, Ivo F. Sbalzarini
2022	J	`jnl`	Learning deterministic hydrodynamic equations from stochastic active particle dynamics. CoRR Suryanarayana Maddu, Quentin Vagne, Ivo F. Sbalzarini
2022	J	`jnl`	Mesh-free collocation for surface differential operators. CoRR Abhinav Singh, Alejandra Foggia, Pietro Incardona, Ivo F. Sbalzarini
2022	J	`jnl`	Model-based autotuning of discretization methods in numerical simulations of partial differential equations. J. Comput. Sci. Nesrine Khouzami, Friedrich Michel, Pietro Incardona, Jerónimo Castrillón, Ivo F. Sbalzarini
2022	J	`jnl`	Parallel Discrete Convolutions on Adaptive Particle Representations of Images. IEEE Trans. Image Process. Joel Jonsson, Bevan L. Cheeseman, Suryanarayana Maddu, Krzysztof Gonciarz, Ivo F. Sbalzarini
2021	J	`jnl`	A Mathematical Definition of Particle Methods. CoRR Johannes Bamme, Ivo F. Sbalzarini
2021	C	`conf`	Distributed Sparse Block Grids on GPUs. ISC Pietro Incardona, Tommaso Bianucci, Ivo F. Sbalzarini
2021	J	`jnl`	Inverse-Dirichlet Weighting Enables Reliable Training of Physics Informed Neural Networks. CoRR Suryanarayana Maddu, Dominik Sturm, Christian L. Müller, Ivo F. Sbalzarini
2021	J	`jnl`	Parallel Discrete Convolutions on Adaptive Particle Representations of Images. CoRR Joel Jonsson, Bevan L. Cheeseman, Suryanarayana Maddu, Krzysztof Gonciarz, Ivo F. Sbalzarini
2021	—	`conf`	Particle-Based Segmentation Of Extended Objects On Curved Biological Membranes. ISBI Anastasia Solomatina, Yannis Kalaidzidis, Alice Cezanne, Karen Soans, Caren Norden, Marino Zerial, Ivo F. Sbalzarini
2021	J	`jnl`	STENCIL-NET: Data-driven solution-adaptive discretization of partial differential equations. CoRR Suryanarayana Maddu, Dominik Sturm, Bevan L. Cheeseman, Christian L. Müller, Ivo F. Sbalzarini
2021	—	`conf`	The OpenPME Problem Solving Environment for Numerical Simulations. ICCS (1) Nesrine Khouzami, Lars Schütze, Pietro Incardona, Landfried Kraatz, Tina Subic, Jerónimo Castrillón, Ivo F. Sbalzarini
2020	J	`jnl`	A robustness measure for singular point and index estimation in discretized orientation and vector fields. CoRR Karl B. Hoffmann, Ivo F. Sbalzarini
2020	—	`conf`	An Architecture for Interactive In Situ Visualization and its Transparent Implementation in OpenFPM. ISAV@SC Aryaman Gupta, Pietro Incardona, Ata Deniz Aydin, Stefan Gumhold, Ulrik Günther, Ivo F. Sbalzarini
2020	J	`jnl`	Big-Data Analytics transformiert die Lebenswissenschaften. Inform. Spektrum Ivo F. Sbalzarini
2020	—	`conf`	Bionic Tracking: Using Eye Tracking to Track Biological Cells in Virtual Reality. ECCV Workshops (1) Ulrik Günther, Kyle I. S. Harrington, Raimund Dachselt, Ivo F. Sbalzarini
2020	J	`jnl`	Bionic Tracking: Using Eye Tracking to Track Biological Cells in Virtual Reality. CoRR Ulrik Günther, Kyle I. S. Harrington, Raimund Dachselt, Ivo F. Sbalzarini
2020	J	`jnl`	Learning physically consistent mathematical models from data using group sparsity. CoRR Suryanarayana Maddu, Bevan L. Cheeseman, Christian L. Müller, Ivo F. Sbalzarini
2020	J	`jnl`	Multivariate Interpolation on Unisolvent Nodes - Lifting the Curse of Dimensionality. CoRR Michael Hecht, Krzysztof Gonciarz, Jannik Michelfeit, Vladimir Sivkin, Ivo F. Sbalzarini
2019	—	`conf`	A Proposed Framework for Interactive Virtual Reality In Situ Visualization of Parallel Numerical Simulations. LDAV Aryaman Gupta, Ulrik Günther, Pietro Incardona, Ata Deniz Aydin, Raimund Dachselt, Stefan Gumhold, Ivo F. Sbalzarini
2019	J	`jnl`	A Proposed Framework for Interactive Virtual Reality In Situ Visualization of Parallel Numerical Simulations. CoRR Aryaman Gupta, Ulrik Günther, Pietro Incardona, Ata Deniz Aydin, Raimund Dachselt, Stefan Gumhold, Ivo F. Sbalzarini
2019	J	`jnl`	OpenFPM: A scalable open framework for particle and particle-mesh codes on parallel computers. Comput. Phys. Commun. Pietro Incardona, Antonio Leo, Yaroslav Zaluzhnyi, Rajesh Ramaswamy, Ivo F. Sbalzarini
2019	J	`jnl`	Stability selection enables robust learning of partial differential equations from limited noisy data. CoRR Suryanarayana Maddu, Bevan L. Cheeseman, Ivo F. Sbalzarini, Christian L. Müller
2019	J	`jnl`	scenery - Flexible Virtual Reality Visualisation on the Java VM. CoRR Ulrik Günther, Tobias Pietzsch, Aryaman Gupta, Kyle I. S. Harrington, Pavel Tomancak, Stefan Gumhold, Ivo F. Sbalzarini
2019	—	`conf`	scenery: Flexible Virtual Reality Visualization on the Java VM. IEEE VIS (Short Papers) Ulrik Günther, Tobias Pietzsch, Aryaman Gupta, Kyle I. S. Harrington, Pavel Tomancak, Stefan Gumhold, Ivo F. Sbalzarini
2018	J	`jnl`	A Domain-Specific Language and Editor for Parallel Particle Methods. ACM Trans. Math. Softw. Sven Karol, Tobias Nett, Jerónimo Castrillón, Ivo F. Sbalzarini
2018	J	`jnl`	OpenFPM: A scalable open framework for particle and particle-mesh codes on parallel computers. CoRR Pietro Incardona, Antonio Leo, Yaroslav Zaluzhnyi, Rajesh Ramaswamy, Ivo F. Sbalzarini
2017	J	`jnl`	A Domain-Specific Language and Editor for Parallel Particle Methods. CoRR Tobias Nett, Sven Karol, Jerónimo Castrillón, Ivo F. Sbalzarini
2017	J	`jnl`	Curvature Filters Efficiently Reduce Certain Variational Energies. IEEE Trans. Image Process. Yuanhao Gong, Ivo F. Sbalzarini
2017	C	`conf`	Robust Mapping of Process Networks to Many-Core Systems using Bio-Inspired Design Centering. SCOPES Gerald Hempel, Andrés Goens, Jerónimo Castrillón, Josefine Asmus, Ivo F. Sbalzarini
2017	J	`jnl`	pSSAlib: The partial-propensity stochastic chemical network simulator. PLoS Comput. Biol. Oleksandr Ostrenko, Pietro Incardona, Rajesh Ramaswamy, Lutz Brusch, Ivo F. Sbalzarini
2016	J	`jnl`	A Natural-Scene Gradient Distribution Prior and its Application in Light-Microscopy Image Processing. IEEE J. Sel. Top. Signal Process. Yuanhao Gong, Ivo F. Sbalzarini
2016	J	`jnl`	Automatic optimal filament segmentation with sub-pixel accuracy using generalized linear models and B-spline level-sets. Medical Image Anal. Xun Xiao, Veikko F. Geyer, Hugo Bowne-Anderson, Jonathon Howard, Ivo F. Sbalzarini
2015	J	`jnl`	A hybrid particle-mesh method for incompressible active polar viscous gels. J. Comput. Phys. Rajesh Ramaswamy, George Bourantas, Frank Jülicher, Ivo F. Sbalzarini
2014	J	`jnl`	A Pthreads Wrapper for Fortran 2003. ACM Trans. Math. Softw. Omar Awile, Ivo F. Sbalzarini
2014	Misc	`conf`	An adaptive distributed resampling algorithm with non-proportional allocation. ICASSP Ömer Demirel, Ihor Smal, Wiro J. Niessen, Erik Meijering, Ivo F. Sbalzarini
2014	J	`jnl`	Gradient Distribution Priors for Biomedical Image Processing. CoRR Yuanhao Gong, Ivo F. Sbalzarini
2014	—	`conf`	Image Enhancement by Gradient Distribution Specification. ACCV Workshops (2) Yuanhao Gong, Ivo F. Sbalzarini
2014	J	`jnl`	Particle methods enable fast and simple approximation of Sobolev gradients in image segmentation. CoRR Ivo F. Sbalzarini, Sophie Schneider, Janick Cardinale
2014	—	`conf`	Towards an FCA-based Recommender System for Black-Box Optimization. FCA4AI@ECAI Josefine Asmus, Daniel Borchmann, Ivo F. Sbalzarini, Dirk Walther
2013	J	`jnl`	A Meshless Particle Method for Poisson and Diffusion Problems with Discontinuous Coefficients and Inhomogeneous Boundary Conditions. SIAM J. Sci. Comput. Nicolas Fiétier, Ömer Demirel, Ivo F. Sbalzarini
2013	J	`jnl`	A portable OpenCL implementation of generic particle-mesh and mesh-particle interpolation in 2D and 3D. Parallel Comput. Ferit Büyükkeçeci, Omar Awile, Ivo F. Sbalzarini
2013	J	`jnl`	Balanced offline allocation of weighted balls into bins CoRR Ömer Demirel, Ivo F. Sbalzarini
2013	J	`jnl`	Balancing indivisible real-valued loads in arbitrary networks. CoRR Ömer Demirel, Ivo F. Sbalzarini
2013	J	`jnl`	Coupling Image Restoration and Segmentation: A Generalized Linear Model/Bregman Perspective. Int. J. Comput. Vis. Grégory Paul, Janick Cardinale, Ivo F. Sbalzarini
2013	B	`conf`	Local weighted Gaussian curvature for image processing. ICIP Yuanhao Gong, Ivo F. Sbalzarini
2013	J	`jnl`	MosaicIA: an ImageJ/Fiji plugin for spatial pattern and interaction analysis. BMC Bioinform. Arun Shivanandan, Aleksandra Radenovic, Ivo F. Sbalzarini
2013	J	`jnl`	PPF - A Parallel Particle Filtering Library. CoRR Ömer Demirel, Ihor Smal, Wiro J. Niessen, Erik Meijering, Ivo F. Sbalzarini
2013	J	`jnl`	Piecewise Constant Sequential Importance Sampling for Fast Particle Filtering. CoRR Ömer Demirel, Ihor Smal, Wiro J. Niessen, Erik Meijering, Ivo F. Sbalzarini
2013	J	`jnl`	Receptor Concentration and Diffusivity Control Multivalent Binding of Sv40 to Membrane Bilayers. PLoS Comput. Biol. Oliwia M. Szklarczyk, Nélido González-Segredo, Philipp Kukura, Ariella Oppenheim, Daniel Choquet, Vahid Sandoghdar, Ari Helenius, Ivo F. Sbalzarini, Helge Ewers
2012	J	`jnl`	A self-organizing Lagrangian particle method for adaptive-resolution advection-diffusion simulations. J. Comput. Phys. Sylvain Reboux, Birte Schrader, Ivo F. Sbalzarini
2012	J	`jnl`	Choosing the Best Kernel: Performance Models for Diffusion Operators in Particle Methods. SIAM J. Sci. Comput. Birte Schrader, Sylvain Reboux, Ivo F. Sbalzarini
2012	—	`conf`	Coupled signed-distance functions for implicit surface reconstruction. ISBI Yuanhao Gong, Grégory Paul, Ivo F. Sbalzarini
2012	J	`jnl`	Discrete Region Competition for Unknown Numbers of Connected Regions. IEEE Trans. Image Process. Janick Cardinale, Grégory Paul, Ivo F. Sbalzarini
2012	J	`jnl`	Energy Landscapes of Atomic Clusters as Black Box Optimization Benchmarks. Evol. Comput. Christian L. Müller, Ivo F. Sbalzarini
2012	J	`jnl`	Fast neighbor lists for adaptive-resolution particle simulations. Comput. Phys. Commun. Omar Awile, Ferit Büyükkeçeci, Sylvain Reboux, Ivo F. Sbalzarini
2011	—	`conf`	An alternating split Bregman algorithm for multi-region segmentation. ACSCC Grégory Paul, Janick Cardinale, Ivo F. Sbalzarini
2011	J	`jnl`	Exact stochastic simulations of intra-cellular transport by mechanically coupled molecular motors. J. Comput. Sci. Jo A. Helmuth, Sylvain Reboux, Ivo F. Sbalzarini
2011	—	`conf`	Global Characterization of the CEC 2005 Fitness Landscapes Using Fitness-Distance Analysis. EvoApplications (1) Christian L. Müller, Ivo F. Sbalzarini
2011	J	`jnl`	Global parameter identification of stochastic reaction networks from single trajectories CoRR Christian L. Müller, Rajesh Ramaswamy, Ivo F. Sbalzarini
2010	J	`jnl`	Abstractions and Middleware for Petascale Computing and Beyond. Int. J. Distributed Syst. Technol. Ivo F. Sbalzarini
2010	J	`jnl`	Beyond co-localization: inferring spatial interactions between sub-cellular structures from microscopy images. BMC Bioinform. Jo A. Helmuth, Grégory Paul, Ivo F. Sbalzarini
2010	J	`jnl`	Discretization correction of general integral PSE Operators for particle methods. J. Comput. Phys. Birte Schrader, Sylvain Reboux, Ivo F. Sbalzarini
2010	—	`conf`	Gaussian Adaptation Revisited - An Entropic View on Covariance Matrix Adaptation. EvoApplications (1) Christian L. Müller, Ivo F. Sbalzarini
2010	B	`conf`	Gaussian Adaptation as a unifying framework for continuous black-box optimization and adaptive Monte Carlo sampling. IEEE Congress on Evolutionary Computation Christian L. Müller, Ivo F. Sbalzarini
2010	J	`jnl`	Intrinsically Disordered Regions May Lower the Hydration Free Energy in Proteins: A Case Study of Nudix Hydrolase in the Bacterium PLoS Comput. Biol. Omar Awile, Anita Krisko, Ivo F. Sbalzarini, Bojan Zagrovic
2009	C	`conf`	A Tunable Real-world Multi-funnel Benchmark Problem for Evolutionary Optimization - And Why Parallel Island Models Might Remedy the Failure of CMA-ES on It. IJCCI Christian L. Müller, Ivo F. Sbalzarini
2009	—	`conf`	Bayesian Image Analysis with On-Line Confidence Estimates and its Application to Microtubule Tracking. ISBI Janick Cardinale, Alexander Rauch, Yves Barral, Gábor Székely, Ivo F. Sbalzarini
2009	—	`conf`	Deconvolving Active Contours for Fluorescence Microscopy Images. ISVC (1) Jo A. Helmuth, Ivo F. Sbalzarini
2009	B	`conf`	Particle Swarm CMA Evolution Strategy for the optimization of multi-funnel landscapes. IEEE Congress on Evolutionary Computation Christian L. Müller, Benedikt Baumgartner, Ivo F. Sbalzarini
2009	A	`conf`	pCMALib: a parallel fortran 90 library for the evolution strategy with covariance matrix adaptation. GECCO Christian L. Müller, Benedikt Baumgartner, Georg Ofenbeck, Birte Schrader, Ivo F. Sbalzarini
2006	—	`conf`	A Software Framework for the Portable Parallelization of Particle-Mesh Simulations. Euro-Par Ivo F. Sbalzarini, Jens H. Walther, B. Polasek, Philippe Chatelain, Michael Bergdorf, Simone Elke Hieber, Evangelos M. Kotsalis, Petros Koumoutsakos
2006	J	`jnl`	PPM - A highly efficient parallel particle-mesh library for the simulation of continuum systems. J. Comput. Phys. Ivo F. Sbalzarini, Jens H. Walther, Michael Bergdorf, Simone Elke Hieber, Evangelos M. Kotsalis, Petros Koumoutsakos
2001	B	`conf`	Evolution strategies for the optimization of microdevices. CEC Sibylle D. Müller, Ivo F. Sbalzarini, Jens H. Walther, Petros Koumoutsakos
2001	C	`conf`	Microchannel Optimization Using Multiobjective Evolution Strategies. EMO Ivo F. Sbalzarini, Sibylle D. Müller, Petros Koumoutsakos