Ivet Bahar - RankMe

43 papers B 1Misc 2Journal 37Unranked 3

Year	Rank	Type	Title / Venue / Authors
2022	J	`jnl`	Elastic network modeling of cellular networks unveils sensor and effector genes that control information flow. PLoS Comput. Biol. Omer Acar, She Zhang, Ivet Bahar, Anne-Ruxandra Carvunis
2022	J	`jnl`	Structural and Dynamic Effects of PTEN C-Terminal Tail Phosphorylation. J. Chem. Inf. Model. Iris N. Smith, Jennifer E. Dawson, James Krieger, Stetson Thacker, Ivet Bahar, Charis Eng
2021	J	`jnl`	ClustENMD: efficient sampling of biomolecular conformational space at atomic resolution. Bioinform. Burak T. Kaynak, She Zhang, Ivet Bahar, Pemra Doruker
2021	J	`jnl`	Coupled mixed model for joint genetic analysis of complex disorders with two independently collected data sets. BMC Bioinform. Haohan Wang, Fen Pei, Michael M. Vanyukov, Ivet Bahar, Wei Wu, Eric P. Xing
2021	J	`jnl`	Predicting Protein-Protein Interactions Using Symmetric Logistic Matrix Factorization. J. Chem. Inf. Model. Fen Pei, Qingya Shi, Haotian Zhang, Ivet Bahar
2021	J	`jnl`	ProDy 2.0: increased scale and scope after 10 years of protein dynamics modelling with Python. Bioinform. She Zhang, James Krieger, Yan Zhang, Cihan Kaya, Burak T. Kaynak, Karolina Mikulska-Ruminska, Pemra Doruker, Hongchun Li, Ivet Bahar
2020	J	`jnl`	Complementary computational and experimental evaluation of missense variants in the ROMK potassium channel. PLoS Comput. Biol. Luca Ponzoni, Nga H. Nguyen, Ivet Bahar, Jeffrey L. Brodsky
2020	J	`jnl`	QuartataWeb: Integrated Chemical-Protein-Pathway Mapping for Polypharmacology and Chemogenomics. Bioinform. Hongchun Li, Fen Pei, D. Lansing Taylor, Ivet Bahar
2020	J	`jnl`	Rhapsody: predicting the pathogenicity of human missense variants. Bioinform. Luca Ponzoni, Daniel A. Peñaherrera, Zoltán N. Oltvai, Ivet Bahar
2019	J	`jnl`	Characterization of Differential Dynamics, Specificity, and Allostery of Lipoxygenase Family Members. J. Chem. Inf. Model. Karolina Mikulska-Ruminska, Indira Shrivastava, James Krieger, She Zhang, Hongchun Li, Hülya Bayir, Sally E. Wenzel, Andrew P. Vandemark, Valerian E. Kagan, Ivet Bahar
2017	J	`jnl`	DynOmics: dynamics of structural proteome and beyond. Nucleic Acids Res. Hongchun Li, Yuan-Yu Chang, Ji Young Lee, Ivet Bahar, Lee-Wei Yang
2015	J	`jnl`	BalestraWeb: efficient online evaluation of drug-target interactions. Bioinform. Murat Can Cobanoglu, Zoltán N. Oltvai, D. Lansing Taylor, Ivet Bahar
2015	J	`jnl`	Comparative study of the effectiveness and limitations of current methods for detecting sequence coevolution. Bioinform. Wenzhi Mao, Cihan Kaya, Anindita Dutta, Amnon Horovitz, Ivet Bahar
2015	J	`jnl`	The anisotropic network model web server at 2015 (ANM 2.0). Bioinform. Eran Eyal, Gengkon Lum, Ivet Bahar
2015	J	`jnl`	The center for causal discovery of biomedical knowledge from big data. J. Am. Medical Informatics Assoc. Gregory F. Cooper, Ivet Bahar, Michael J. Becich, Panayiotis V. Benos, Jeremy M. Berg, Jeremy U. Espino, Clark Glymour, Rebecca Crowley Jacobson, Michelle Kienholz, Adrian V. Lee, Xinghua Lu, Richard Scheines
2014	J	`jnl`	ATPase Subdomain IA Is a Mediator of Interdomain Allostery in Hsp70 Molecular Chaperones. PLoS Comput. Biol. Ignacio J. General, Ying Liu, Mandy E. Blackburn, Wenzhi Mao, Lila M. Gierasch, Ivet Bahar
2014	J	`jnl`	Complete Mapping of Substrate Translocation Highlights the Role of LeuT N-terminal Segment in Regulating Transport Cycle. PLoS Comput. Biol. Mary Hongying Cheng, Ivet Bahar
2014	J	`jnl`	Exploring the Conformational Transitions of Biomolecular Systems Using a Simple Two-State Anisotropic Network Model. PLoS Comput. Biol. Avisek Das, Mert Gur, Mary Hongying Cheng, Sunhwan Jo, Ivet Bahar, Benoît Roux
2013	J	`jnl`	Predicting Drug-Target Interactions Using Probabilistic Matrix Factorization. J. Chem. Inf. Model. Murat Can Cobanoglu, Chang Liu, Feizhuo Hu, Zoltán N. Oltvai, Ivet Bahar
2012	J	`jnl`	Coupling between Catalytic Loop Motions and Enzyme Global Dynamics. PLoS Comput. Biol. Zeynep Kurkcuoglu, Ahmet Bakan, Duygu Kocaman, Ivet Bahar, Pemra Doruker
2011	J	`jnl`	Changes in Dynamics upon Oligomerization Regulate Substrate Binding and Allostery in Amino Acid Kinase Family Members. PLoS Comput. Biol. Enrique Marcos, Ramon Crehuet, Ivet Bahar
2011	Misc	`conf`	Computational Generation inhibitor-Bound Conformers of P38 Map Kinase and Comparison with Experiments. Pacific Symposium on Biocomputing Ahmet Bakan, Ivet Bahar
2010	J	`jnl`	On the Conservation of the Slow Conformational Dynamics within the Amino Acid Kinase Family: NAGK the Paradigm. PLoS Comput. Biol. Enrique Marcos, Ramon Crehuet, Ivet Bahar
2010	J	`jnl`	Role of Hsp70 ATPase Domain Intrinsic Dynamics and Sequence Evolution in Enabling its Functional Interactions with NEFs. PLoS Comput. Biol. Ying Liu, Lila M. Gierasch, Ivet Bahar
2010	Misc	`conf`	Toward Understanding Allosteric Signaling Mechanisms in the ATPase Domain of Molecular Chaperones. Pacific Symposium on Biocomputing Ying Liu, Ivet Bahar
2010	J	`jnl`	Using Entropy Maximization to Understand the Determinants of Structural Dynamics beyond Native Contact Topology. PLoS Comput. Biol. Timothy R. Lezon, Ivet Bahar
2009	J	`jnl`	Allosteric Transitions of Supramolecular Systems Explored by Network Models: Application to Chaperonin GroEL. PLoS Comput. Biol. Zheng Yang, Peter Májek, Ivet Bahar
2009	J	`jnl`	Global Motions of the Nuclear Pore Complex: Insights from Elastic Network Models. PLoS Comput. Biol. Timothy R. Lezon, Andrej Sali, Ivet Bahar
2009	J	`jnl`	Principal component analysis of native ensembles of biomolecular structures (PCA_NEST): insights into functional dynamics. Bioinform. Lee-Wei Yang, Eran Eyal, Ivet Bahar, Akio Kitao
2009	J	`jnl`	Principal component analysis of native ensembles of biomolecular structures (PCA_NEST): insights into functional dynamics. Bioinform. Lee-Wei Yang, Eran Eyal, Ivet Bahar, Akio Kitao
2008	J	`jnl`	Analysis of correlated mutations in HIV-1 protease using spectral clustering. Bioinform. Ying Liu, Eran Eyal, Ivet Bahar
2007	—	`conf`	Anisotropic fluctuations of amino acids in protein structures: insights from X-ray crystallography and elastic network models. ISMB/ECCB (Supplement of Bioinformatics) Eran Eyal, Chakra Chennubhotla, Lee-Wei Yang, Ivet Bahar
2007	J	`jnl`	Correction: Signal Propagation in Proteins and Relation to Equilibrium Fluctuations. PLoS Comput. Biol. Chakra Chennubhotla, Ivet Bahar
2007	J	`jnl`	Markov Methods for Hierarchical Coarse-Graining of Large Protein Dynamics. J. Comput. Biol. Chakra Chennubhotla, Ivet Bahar
2007	J	`jnl`	Rapid assessment of correlated amino acids from pair-to-pair (P2P) substitution matrices. Bioinform. Eran Eyal, Shmuel Pietrokovski, Ivet Bahar
2007	J	`jnl`	Recruitment of rare BMC Bioinform. Dror Tobi, Ivet Bahar
2007	J	`jnl`	Signal Propagation in Proteins and Relation to Equilibrium Fluctuations. PLoS Comput. Biol. Chakra Chennubhotla, Ivet Bahar
2006	J	`jnl`	Anisotropic network model: systematic evaluation and a new web interface. Bioinform. Eran Eyal, Lee-Wei Yang, Ivet Bahar
2006	B	`conf`	Markov Methods for Hierarchical Coarse-Graining of Large Protein Dynamics. RECOMB Chakra Chennubhotla, Ivet Bahar
2006	J	`jnl`	Topological basis of signal integration in the transcriptional-regulatory network of the yeast, BMC Bioinform. Illés J. Farkas, Chuang Wu, Chakra Chennubhotla, Ivet Bahar, Zoltán N. Oltvai
2004	—	`conf`	Mining frequent patterns in protein structures: a study of protease families. ISMB/ECCB (Supplement of Bioinformatics) Shann-Ching Chen, Ivet Bahar
2004	—	`conf`	Protein Functional Motion Query and Visualization. COMPSAC Workshops Xiong Liu, Hassan A. Karimi, Lee-Wei Yang, Ivet Bahar
2002	J	`jnl`	Dynamics of large proteins through hierarchical levels of coarse-grained structures. J. Comput. Chem. Pemra Doruker, Robert L. Jernigan, Ivet Bahar