Ivan Ovcharenko

16 papers Journal 14Unranked 2
YearRankTypeTitle / Venue / Authors
2023 J jnl
ChromDL: a next-generation regulatory DNA classifier.
Bioinform.
Christopher Hill, Sanjarbek Hudaiberdiev, Ivan Ovcharenko
2018 J jnl
Enhancer reprogramming in mammalian genomes.
BMC Bioinform.
Mario A. Flores, Ivan Ovcharenko
2018 J jnl
SNPDelScore: combining multiple methods to score deleterious effects of noncoding mutations in the human genome.
Bioinform.
Roberto Vera Alvarez, Shan Li, David Landsman, Ivan Ovcharenko
2012 J jnl
CLARE: Cracking the LAnguage of Regulatory Elements.
Bioinform.
Leila Taher, Leelavati Narlikar, Ivan Ovcharenko
2012 J jnl
Predicting tissue specific cis-regulatory modules in the human genome using pairs of co-occurring motifs.
BMC Bioinform.
Hani Z. Girgis, Ivan Ovcharenko
2010 — conf
Structure of Proximal and Distant Regulatory Elements in the Human Genome.
ISBRA
Ivan Ovcharenko
2009 J jnl
Variable locus length in the human genome leads to ascertainment bias in functional inference for non-coding elements.
Bioinform.
Leila Taher, Ivan Ovcharenko
2008 J jnl
DiRE: identifying distant regulatory elements of co-expressed genes.
Nucleic Acids Res.
Valer Gotea, Ivan Ovcharenko
2007 J jnl
ECRbase: database of evolutionary conserved regions, promoters, and transcription factor binding sites in vertebrate genomes.
Bioinform.
Gabriela G. Loots, Ivan Ovcharenko
2006 J jnl
Array2BIO: from microarray expression data to functional annotation of co-regulated genes.
BMC Bioinform.
Gabriela G. Loots, Patrick S. G. Chain, Shalini Mabery, Amy Rasley, Emilio Garcia, Ivan Ovcharenko
2005 J jnl
Dcode.org anthology of comparative genomic tools.
Nucleic Acids Res.
Gabriela G. Loots, Ivan Ovcharenko
2005 J jnl
Identifying synonymous regulatory elements in vertebrate genomes.
Nucleic Acids Res.
Ivan Ovcharenko, Marcelo A. Nobrega
2004 J jnl
CREME: Cis-Regulatory Module Explorer for the human genome.
Nucleic Acids Res.
Roded Sharan, Asa Ben-Hur, Gabriela G. Loots, Ivan Ovcharenko
2004 J jnl
ECR Browser: a tool for visualizing and accessing data from comparisons of multiple vertebrate genomes.
Nucleic Acids Res.
Ivan Ovcharenko, Marcelo A. Nobrega, Gabriela G. Loots, Lisa Stubbs
2004 J jnl
rVISTA 2.0: evolutionary analysis of transcription factor binding sites.
Nucleic Acids Res.
Gabriela G. Loots, Ivan Ovcharenko
2003 — conf
CREME: a framework for identifying cis-regulatory modules in human-mouse conserved segments.
ISMB (Supplement of Bioinformatics)
Roded Sharan, Ivan Ovcharenko, Asa Ben-Hur, Richard M. Karp