Ivan Molineris

11 papers Journal 11
YearRankTypeTitle / Venue / Authors
2025 J jnl
Ohno-miRNAs: miRNA pairs derived from whole-genome duplication.
PLoS Comput. Biol.
Leonardo Agasso, Ivan Molineris, Michele Caselle
2025 J jnl
Snakemaker: Seamlessly transforming ad-hoc analyses into sustainable Snakemake workflows with generative AI.
CoRR
Marco Masera, Alessandro Leone, Johannes Köster, Ivan Molineris
2021 J jnl
Laniakea@ReCaS: exploring the potential of customisable Galaxy on-demand instances as a cloud-based service.
BMC Bioinform.
Marco Antonio Tangaro, Pietro Mandreoli, Matteo Chiara, Giacinto Donvito, Marica Antonacci, Antonio Parisi, Angelica Bianco, Angelo Romano, Daniela Manila Bianchi, Davide Cangelosi, Paolo Uva, Ivan Molineris, Vladimir Nosi, Raffaele A. Calogero, Luca Alessandrì, Elena Pedrini, Marina Mordenti, Emanuele Bonetti, Luca Sangiorgi, Graziano Pesole, Federico Zambelli
2017 J jnl
In silico prediction of lncRNA function using tissue specific and evolutionary conserved expression.
BMC Bioinform.
Umberto Perron, Paolo Provero, Ivan Molineris
2016 J jnl
Roar: detecting alternative polyadenylation with standard mRNA sequencing libraries.
BMC Bioinform.
Elena Grassi, Elisa Mariella, Antonio Lembo, Ivan Molineris, Paolo Provero
2013 J jnl
Disease-gene discovery by integration of 3D gene expression and transcription factor binding affinities.
Bioinform.
Rosario M. Piro, Ivan Molineris, Ferdinando Di Cunto, Roland Eils, Rainer König
2013 J jnl
Drug repositioning for orphan genetic diseases through Conserved Anticoexpressed Gene Clusters (CAGCs).
BMC Bioinform.
Ivan Molineris, Ugo Ala, Paolo Provero, Ferdinando Di Cunto
2012 J jnl
KungFQ: A Simple and Powerful Approach to Compress fastq Files.
IEEE ACM Trans. Comput. Biol. Bioinform.
Elena Grassi, Federico Di Gregorio, Ivan Molineris
2010 J jnl
A New Approach for the Identification of Processed Pseudogenes.
J. Comput. Biol.
Ivan Molineris, Gabriele Sales, Federico Bianchi, Ferdinando Di Cunto, Michele Caselle
2010 J jnl
Candidate gene prioritization based on spatially mapped gene expression: an application to XLMR.
Bioinform.
Rosario Michael Piro, Ivan Molineris, Ugo Ala, Paolo Provero, Ferdinando Di Cunto
2008 J jnl
Graph theory analysis of genomics problems: Community analysis of fragile sites correlations and of pseudogenes alignments.
Comput. Math. Appl.
Angela Re, Ivan Molineris, Michele Caselle