Ivan Ivanov

23 papers A 1Journal 15Unranked 7
YearRankTypeTitle / Venue / Authors
2022 — conf
Comparative Study of Synthetic Bulk RNA-Seq Generators.
IWBBIO (2)
Felitsiya Shakola, Dean Palejev, Ivan Ivanov
2022 J jnl
Network Classification Based on Reducibility With Respect to the Stability of Canalizing Power of Genes in a Gene Regulatory Network - A Boolean Network Modeling Perspective.
IEEE ACM Trans. Comput. Biol. Bioinform.
Eunji Kim, Ivan Ivanov, Edward R. Dougherty
2019 J jnl
Quantifying the notions of canalizing and master genes in a gene regulatory network - a Boolean network modeling perspective.
Bioinform.
Eunji Kim, Ivan Ivanov, Edward R. Dougherty
2018 J jnl
Detecting Multivariate Gene Interactions in RNA-Seq Data Using Optimal Bayesian Classification.
IEEE ACM Trans. Comput. Biol. Bioinform.
Jason M. Knight, Ivan Ivanov, Karen Triff, Robert S. Chapkin, Edward R. Dougherty
2016 — conf
Model-based study of the Effectiveness of Reporting Lists of Small Feature Sets using RNA-Seq Data.
BCB
Eunji Kim, Ivan Ivanov, Jianping Hua, Robert S. Chapkin, Edward R. Dougherty
2014 J jnl
MCMC implementation of the optimal Bayesian classifier for non-Gaussian models: model-based RNA-Seq classification.
BMC Bioinform.
Jason M. Knight, Ivan Ivanov, Edward R. Dougherty
2013 — conf
Bayesian multivariate Poisson model for RNA-seq classification.
GENSiPS
Jason M. Knight, Ivan Ivanov, Edward R. Dougherty
2013 J jnl
Modeling the Next Generation Sequencing sample processing pipeline for the purposes of classification.
BMC Bioinform.
Noushin Ghaffari, Mohammadmahdi R. Yousefi, Charles D. Johnson, Ivan Ivanov, Edward R. Dougherty
2013 — conf
Optimal control of gene regulatory networks with uncertain intervention effects.
GlobalSIP
Mohammadmahdi R. Yousefi, Ivan Ivanov
2012 A conf
Feature Selection for High-dimensional Integrated Data.
SDM
Charles Zheng, Scott Schwartz, Robert S. Chapkin, Raymond J. Carroll, Ivan Ivanov
2012 J jnl
Identifying mechanistic similarities in drug responses.
Bioinform.
Chen Zhao, Jianping Hua, Michael L. Bittner, Ivan Ivanov, Edward R. Dougherty
2011 J jnl
A CoD-based stationary control policy for intervening in large gene regulatory networks.
BMC Bioinform.
Noushin Ghaffari, Ivan Ivanov, Xiaoning Qian, Edward R. Dougherty
2011 — conf
Pathway analysis in the context of Bayesian networks - mathematical modeling of master and canalizing genes.
GENSiPS
Chen Zhao, Ivan Ivanov, Michael L. Bittner, Edward R. Dougherty
2010 J jnl
A CoD-based reduction algorithm for designing stationary control policies on Boolean networks.
Bioinform.
Noushin Ghaffari, Ivan Ivanov, Xiaoning Qian, Edward R. Dougherty
2010 — conf
Conditioning-based model for the regulatory activities of microRNAs in specific dietary contexts.
GENSiPS
Chen Zhao, Ivan Ivanov, Manasvi Shah, Laurie A. Davidson, Robert S. Chapkin, Edward R. Dougherty
2010 J jnl
Selection policy-induced reduction mappings for Boolean networks.
IEEE Trans. Signal Process.
Ivan Ivanov, Plamen Simeonov, Noushin Ghaffari, Xiaoning Qian, Edward R. Dougherty
2010 J jnl
State reduction for network intervention in probabilistic Boolean networks.
Bioinform.
Xiaoning Qian, Noushin Ghaffari, Ivan Ivanov, Edward R. Dougherty
2009 — conf
A CoD based reduction algorithm for Boolean and probabilistic Boolean networks.
GENSiPS
Noushin Ghaffari, Ivan Ivanov, Edward R. Dougherty
2009 J jnl
Intervention in gene regulatory networks via greedy control policies based on long-run behavior.
BMC Syst. Biol.
Xiaoning Qian, Ivan Ivanov, Noushin Ghaffari, Edward R. Dougherty
2007 J jnl
Dynamics Preserving Size Reduction Mappings for Probabilistic Boolean Networks.
IEEE Trans. Signal Process.
Ivan Ivanov, Ranadip Pal, Edward R. Dougherty
2005 J jnl
Generating Boolean networks with a prescribed attractor structure.
Bioinform.
Ranadip Pal, Ivan Ivanov, Aniruddha Datta, Michael L. Bittner, Edward R. Dougherty
2004 J jnl
A Bayesian connectivity-based approach to constructing probabilistic gene regulatory networks.
Bioinform.
Xiaobo Zhou, Xiaodong Wang, Ranadip Pal, Ivan Ivanov, Michael L. Bittner, Edward R. Dougherty
2004 J jnl
Reduction Mappings between Probabilistic Boolean Networks.
EURASIP J. Adv. Signal Process.
Ivan Ivanov, Edward R. Dougherty