Isidore Rigoutsos

45 papers A* 7A 3B 4C 1Journal 24Unranked 2
YearRankTypeTitle / Venue / Authors
2022 J jnl
Reproducibility efforts as a teaching tool: A pilot study.
PLoS Comput. Biol.
Nestoras Karathanasis, Daniel Hwang, Vibol Heng, Rimal Abhimannyu, Phillip Slogoff-Sevilla, Gina Buchel, Victoria Frisbie, Peiyao Li, Dafni Kryoneriti, Isidore Rigoutsos
2021 J jnl
IsoMiRmap: fast, deterministic and exhaustive mining of isomiRs from short RNA-seq datasets.
Bioinform.
Phillipe Loher, Nestoras Karathanasis, Eric Londin, Paul F. Bray, Venetia Pliatsika, Aristeidis G. Telonis, Isidore Rigoutsos
2020 J jnl
Unification of miRNA and isomiR research: the mirGFF3 format and the mirtop API.
Bioinform.
Thomas Desvignes, Phillipe Loher, Karen Eilbeck, Jeffery Ma, Gianvito Urgese, Bastian Fromm, Jason Sydes, Ernesto Aparicio-Puerta, Víctor Barrera, Roderic Espín, Florian Thibord, Xavier Bofill-De Ros, Eric Londin, Aristeidis G. Telonis, Elisa Ficarra, Marc R. Friedländer, John H. Postlethwait, Isidore Rigoutsos, Michael Hackenberg, Ioannis S. Vlachos, Marc K. Halushka, Lorena Pantano
2018 J jnl
MINTbase v2.0: a comprehensive database for tRNA-derived fragments that includes nuclear and mitochondrial fragments from all The Cancer Genome Atlas projects.
Nucleic Acids Res.
Venetia Pliatsika, Phillipe Loher, Rogan Magee, Aristeidis G. Telonis, Eric Londin, Megumi Shigematsu, Yohei Kirino, Isidore Rigoutsos
2017 J jnl
Threshold-seq: a tool for determining the threshold in short RNA-seq datasets.
Bioinform.
Rogan Magee, Phillipe Loher, Eric Londin, Isidore Rigoutsos
2016 J jnl
Consequential considerations when mapping tRNA fragments.
BMC Bioinform.
Aristeidis G. Telonis, Phillipe Loher, Yohei Kirino, Isidore Rigoutsos
2016 J jnl
MINTbase: a framework for the interactive exploration of mitochondrial and nuclear tRNA fragments.
Bioinform.
Venetia Pliatsika, Phillipe Loher, Aristeidis G. Telonis, Isidore Rigoutsos
2012 J jnl
Interactive exploration of RNA22 microRNA target predictions.
Bioinform.
Phillipe Loher, Isidore Rigoutsos
2010 B conf
Anchoring millions of distinct reads on the human genome within seconds.
EDBT
Tien Huynh, Michail Vlachos, Isidore Rigoutsos
2009 J jnl
Alu and B1 Repeats Have Been Selectively Retained in the Upstream and Intronic Regions of Genes of Specific Functional Classes.
PLoS Comput. Biol.
Aristotelis Tsirigos, Isidore Rigoutsos
2006 J jnl
A generic motif discovery algorithm for sequential data.
Bioinform.
Kyle L. Jensen, Mark P. Styczynski, Isidore Rigoutsos, Gregory Stephanopoulos
2006 J jnl
Data mining and clinical data repositories: Insights from a 667, 000 patient data set.
Comput. Biol. Medicine
Irene M. Mullins, Mir S. Siadaty, Jason A. Lyman, Ken Scully, Carleton T. Garrett, W. Greg Miller, Rudy Muller, Barry Robson, Chid Apté, Sholom M. Weiss, Isidore Rigoutsos, Daniel E. Platt, Simona Cohen, William A. Knaus
2004 — conf
Chung-Kwei: a Pattern-discovery-based System for the Automatic Identification of Unsolicited E-mail Messages (SPAM).
CEAS
Isidore Rigoutsos, Tien Huynh
2004 A conf
Of parts and relationships: an unending quest.
CIKM
Isidore Rigoutsos
2004 — ed.
Proceedings of the 4th ACM SIGKDD Workshop on Data Mining in Bioinformatics (BIOKDD 2004), August 22th, 2004, Seattle, Washington, USA
BIOKDD
Mohammed Javeed Zaki, Shinichi Morishita, Isidore Rigoutsos
2004 J jnl
Report on BIOKDD04: workshop on data mining in Bioinformatics.
SIGKDD Explor.
Mohammed Javeed Zaki, Shinichi Morishita, Isidore Rigoutsos
2004 J jnl
The web server of IBM's Bioinformatics and Pattern Discovery group: 2004 update.
Nucleic Acids Res.
Tien Huynh, Isidore Rigoutsos
2003 J jnl
Evaluation of annotation strategies using an entire genome sequence.
Bioinform.
Ioannis Iliopoulos, Sophia Tsoka, Miguel A. Andrade, Anton J. Enright, Mark Carroll, Patrick Poullet, Vasilis J. Promponas, Theodore Liakopoulos, Giorgos Palaios, Claude Pasquier, Stavros J. Hamodrakas, Javier Tamames, Asutosh T. Yagnik, Anna Tramontano, Damien Devos, Christian Blaschke, Alfonso Valencia, David Brett, David M. A. Martin, Christophe Leroy, Isidore Rigoutsos, Chris Sander, Christos A. Ouzounis
2003 J jnl
The web server of IBM's Bioinformatics and Pattern Discovery group.
Nucleic Acids Res.
Tien Huynh, Isidore Rigoutsos, Laxmi Parida, Daniel E. Platt, Tetsuo Shibuya
2002 J jnl
Finding Patterns in Three-Dimensional Graphs: Algorithms and Applications to Scientific Data Mining.
IEEE Trans. Knowl. Data Eng.
Xiong Wang, Jason Tsong-Li Wang, Dennis E. Shasha, Bruce A. Shapiro, Isidore Rigoutsos, Kaizhong Zhang
2001 B conf
An Output-Sensitive Flexible Pattern Discovery Algorithm.
CPM
Laxmi Parida, Isidore Rigoutsos, Daniel E. Platt
2001 J jnl
DELPHI: A pattern-based method for detecting sequence similarity.
IBM J. Res. Dev.
Aris Floratos, Isidore Rigoutsos, Laxmi Parida, Yuan Gao
2001 J jnl
QSAR in grossly underdetermined systems: Opportunities and issues.
IBM J. Res. Dev.
Daniel E. Platt, Laxmi Parida, Yuan Gao, Aris Floratos, Isidore Rigoutsos
2000 — conf
Knowledge discovery in biological domains (tutorial AM-3).
KDD Tutorial Notes
Aris Floratos, Igor Jurisica, Isidore Rigoutsos
2000 A* conf
Pattern discovery on character sets and real-valued data: linear bound on irredundant motifs and an efficient polynomial time algorithm.
SODA
Laxmi Parida, Isidore Rigoutsos, Aris Floratos, Daniel E. Platt, Yuan Gao
1999 J jnl
An Approximation Algorithm for Alignment of Multiple Sequences using Motif Discovery.
J. Comb. Optim.
Laxmi Parida, Aris Floratos, Isidore Rigoutsos
1999 A conf
Building Dictionaries of 1D and 3D Motifs by Mining the Unaligned 1D Sequences of 17 Archaeal and Bacterial Genomes.
ISMB
Isidore Rigoutsos, Yuan Gao, Aris Floratos, Laxmi Parida
1999 — ch.
Representation and Matching of Small Flexible Molecules in Large Databases of 3D Molecular Information.
Pattern Discovery in Biomolecular Data
Isidore Rigoutsos, Daniel E. Platt, Andrea Califano, B. David Silverman
1999 B conf
Sequence homology detection through large scale pattern discovery.
RECOMB
Aris Floratos, Isidore Rigoutsos, Laxmi Parida, Gustavo Stolovitzky, Yuan Gao
1998 J jnl
Combinatorial pattern discovery in biological sequences: The TEIRESIAS algorithm [published erratum appears in Bioinformatics 1998;14(2): 229].
Bioinform.
Isidore Rigoutsos, Aris Floratos
1998 J jnl
Managing Statistical Behavior of Large Data Sets in Shared-Nothing Architectures.
IEEE Trans. Parallel Distributed Syst.
Isidore Rigoutsos, Alex Delis
1998 B conf
Motif discovery without alignment or enumeration (extended abstract).
RECOMB
Isidore Rigoutsos, Aris Floratos
1998 A* conf
Two-Dimensional Affine Invariants that Distribute Uniformly and can be Tuned to any Convex Feature Domain.
ICCV
Isidore Rigoutsos
1998 A* conf
Well-Behaved, Tunable 3D-Affine Invariants.
CVPR
Isidore Rigoutsos
1997 A* conf
Automated Discovery of Active Motifs in Three Dimensional Molecules.
KDD
Xiong Wang, Jason Tsong-Li Wang, Dennis E. Shasha, Bruce A. Shapiro, Sitaram Dikshitulu, Isidore Rigoutsos, Kaizhong Zhang
1996 C conf
The Impact of Hashing Function Choice on the Load Balancing in Very Large Dartasets.
SEKE
Isidore Rigoutsos, Alex Delis
1995 J jnl
A Bayesian Approach to Model Matching with Geometric Hashing.
Comput. Vis. Image Underst.
Isidore Rigoutsos, Robert A. Hummel
1993 A* conf
Distributed Bayesian object recognition.
CVPR
Isidore Rigoutsos, Robert A. Hummel
1993 A conf
FLASH: A Fast Look-Up Algorithm for String Homology.
ISMB
Andrea Califano, Isidore Rigoutsos
1993 A* conf
FLASH: a fast look-up algorithm for string homology.
CVPR
Andrea Califano, Isidore Rigoutsos
1992 — —
Massively Parallel Bayesian Object Recognition.
Isidore Rigoutsos
1992 J jnl
Massively Parallel Model Matching: Geometric Hashing on the Connection Machine.
Computer
Isidore Rigoutsos, Robert A. Hummel
1992 — ch.
Visuo-Tactual Coarseness Estimation Tasks: Experiments and Modeling.
Advances in Machine Vision
Isidore Rigoutsos
1991 J jnl
An algorithm for point clustering and grid generation.
IEEE Trans. Syst. Man Cybern.
Marsha J. Berger, Isidore Rigoutsos
1986 A* conf
Determining the 3-D Motion of a Rigid Surface Patch Without Correspondence under Perspective Projection.
AAAI
Yiannis Aloimonos, Isidore Rigoutsos