Isabel Sá-Correia

12 papers Journal 12
YearRankTypeTitle / Venue / Authors
2023 J jnl
YEASTRACT+: a portal for the exploitation of global transcription regulation and metabolic model data in yeast biotechnology and pathogenesis.
Nucleic Acids Res.
Miguel Cacho Teixeira, Romeu Viana, Margarida Palma, Jorge Oliveira, Mónica Galocha, Marta Neves Mota, Diogo Couceiro, Maria Galhardas Pereira, Miguel Antunes, Inês V. Costa, Pedro Pais, Carolina Parada, Claudine Chaouiya, Isabel Sá-Correia, Pedro Tiago Monteiro
2021 J jnl
From a genome assembly to full regulatory network prediction: the case study of Rhodotorula toruloides putative Haa1-regulon.
BMC Bioinform.
Jorge Oliveira, Miguel Antunes, Cláudia P. Godinho, Miguel C. Teixeira, Isabel Sá-Correia, Pedro T. Monteiro
2020 J jnl
YEASTRACT+: a portal for cross-species comparative genomics of transcription regulation in yeasts.
Nucleic Acids Res.
Pedro T. Monteiro, Jorge Oliveira, Pedro Pais, Miguel Antunes, Margarida Palma, Mafalda Cavalheiro, Mónica Galocha, Cláudia P. Godinho, Luís C. Martins, Nuno Bourbon, Marta Neves Mota, Ricardo A. Ribeiro, Romeu Viana, Isabel Sá-Correia, Miguel C. Teixeira
2018 J jnl
YEASTRACT: an upgraded database for the analysis of transcription regulatory networks in Saccharomyces cerevisiae.
Nucleic Acids Res.
Miguel C. Teixeira, Pedro T. Monteiro, Margarida Palma, Catarina Costa, Cláudia P. Godinho, Pedro Pais, Mafalda Cavalheiro, Miguel Antunes, Alexandre Lemos, Tiago Pedreira, Isabel Sá-Correia
2017 J jnl
The PathoYeastract database: an information system for the analysis of gene and genomic transcription regulation in pathogenic yeasts.
Nucleic Acids Res.
Pedro Tiago Monteiro, Pedro Pais, Catarina Costa, Sauvagya Manna, Isabel Sá-Correia, Miguel Cacho Teixeira
2014 J jnl
The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in
Nucleic Acids Res.
Miguel Cacho Teixeira, Pedro Tiago Monteiro, Joana Fernandes Guerreiro, Joana Pinho Gonçalves, Nuno Pereira Mira, Sandra Costa dos Santos, Tânia Rodrigues Cabrito, Margarida Palma, Catarina Costa, Alexandre Paulo Francisco, Sara Cordeiro Madeira, Arlindo Limede Oliveira, Ana Teresa Freitas, Isabel Sá-Correia
2011 J jnl
TFRank: network-based prioritization of regulatory associations underlying transcriptional responses.
Bioinform.
Joana P. Gonçalves, Alexandre P. Francisco, Nuno P. Mira, Miguel C. Teixeira, Isabel Sá-Correia, Arlindo L. Oliveira, Sara C. Madeira
2011 J jnl
YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in
Nucleic Acids Res.
Dário Abdulrehman, Pedro T. Monteiro, Miguel C. Teixeira, Nuno P. Mira, Artur B. Lourenço, Sandra Costa dos Santos, Tânia Rodrigues Cabrito, Alexandre P. Francisco, Sara C. Madeira, Ricardo Santos Aires, Arlindo L. Oliveira, Isabel Sá-Correia, Ana T. Freitas
2010 J jnl
Identification of Regulatory Modules in Time Series Gene Expression Data Using a Linear Time Biclustering Algorithm.
IEEE ACM Trans. Comput. Biol. Bioinform.
Sara C. Madeira, Miguel C. Teixeira, Isabel Sá-Correia, Arlindo L. Oliveira
2008 J jnl
YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in
Nucleic Acids Res.
Pedro T. Monteiro, Nuno D. Mendes, Miguel C. Teixeira, Sofia d'Orey, Sandra Tenreiro, Nuno P. Mira, Hélio Pais, Alexandre P. Francisco, Alexandra M. Carvalho, Artur B. Lourenço, Isabel Sá-Correia, Arlindo L. Oliveira, Ana T. Freitas
2006 J jnl
MUSA: a parameter free algorithm for the identification of biologically significant motifs.
Bioinform.
Nuno D. Mendes, Ana C. Casimiro, Pedro M. Santos, Isabel Sá-Correia, Arlindo L. Oliveira, Ana T. Freitas
2006 J jnl
The YEASTRACT database: a tool for the analysis of transcription regulatory associations in
Nucleic Acids Res.
Miguel C. Teixeira, Pedro T. Monteiro, Pooja Jain, Sandra Tenreiro, Alexandra R. Fernandes, Nuno P. Mira, Marta Alenquer, Ana T. Freitas, Arlindo L. Oliveira, Isabel Sá-Correia