Isabel Funke

22 papers B 1Journal 15Unranked 6
YearRankTypeTitle / Venue / Authors
2026 J jnl
CoRR
Isabel Funke, Sebastian Bodenstedt, Felix von Bechtolsheim, Florian Oehme, Michael Maruschke, Stefanie Herrlich, Jürgen Weitz, Marius Distler, Sören Torge Mees, Stefanie Speidel
2025 conf
MICCAI (11)
Danush Kumar Venkatesh, Isabel Funke, Micha Pfeiffer, Fiona R. Kolbinger, Hanna Maria Schmeiser, Marius Distler, Jürgen Weitz, Stefanie Speidel
2025 J jnl
CoRR
Danush Kumar Venkatesh, Isabel Funke, Micha Pfeiffer, Fiona R. Kolbinger, Hanna Maria Schmeiser, Jürgen Weitz, Marius Distler, Stefanie Speidel
2025 J jnl
IEEE Trans. Biomed. Eng.
Isabel Funke, Dominik Rivoir, Stefanie Krell, Stefanie Speidel
2024 J jnl
Int. J. Comput. Assist. Radiol. Surg.
Hanna Hoffmann, Isabel Funke, Philipp Peters, Danush Kumar Venkatesh, Jan Egger, Dominik Rivoir, Rainer Röhrig, Frank Hölzle, Sebastian Bodenstedt, Marie-Christin Willemer, Stefanie Speidel, Behrus Puladi
2024 J jnl
Medical Image Anal.
Dominik Rivoir, Isabel Funke, Stefanie Speidel
2023 J jnl
CoRR
Isabel Funke, Dominik Rivoir, Stefanie Speidel
2023 J jnl
CoRR
Isabel Funke, Dominik Rivoir, Stefanie Krell, Stefanie Speidel
2022 J jnl
IEEE Trans. Medical Imaging
Beatrice van Amsterdam, Isabel Funke, Eddie Edwards, Stefanie Speidel, Justin Collins, Ashwin Sridhar, John D. Kelly, Matthew J. Clarkson, Danail Stoyanov
2022 J jnl
CoRR
Dominik Rivoir, Isabel Funke, Stefanie Speidel
2020 conf
MICCAI (3)
Dominik Rivoir, Sebastian Bodenstedt, Isabel Funke, Felix von Bechtolsheim, Marius Distler, Jürgen Weitz, Stefanie Speidel
2020 J jnl
CoRR
Dominik Rivoir, Sebastian Bodenstedt, Isabel Funke, Felix von Bechtolsheim, Marius Distler, Jürgen Weitz, Stefanie Speidel
2019 conf
MICCAI (5)
Micha Pfeiffer, Isabel Funke, Maria R. Robu, Sebastian Bodenstedt, Leon Strenger, Sandy Engelhardt, Tobias Roß, Matthew J. Clarkson, Kurinchi Gurusamy, Brian R. Davidson, Lena Maier-Hein, Carina Riediger, Thilo Welsch, Jürgen Weitz, Stefanie Speidel
2019 J jnl
CoRR
Micha Pfeiffer, Isabel Funke, Maria R. Robu, Sebastian Bodenstedt, Leon Strenger, Sandy Engelhardt, Tobias Roß, Matthew J. Clarkson, Kurinchi Gurusamy, Brian R. Davidson, Lena Maier-Hein, Carina Riediger, Thilo Welsch, Jürgen Weitz, Stefanie Speidel
2019 conf
MICCAI (5)
Isabel Funke, Sebastian Bodenstedt, Florian Oehme, Felix von Bechtolsheim, Jürgen Weitz, Stefanie Speidel
2019 J jnl
CoRR
Isabel Funke, Sebastian Bodenstedt, Florian Oehme, Felix von Bechtolsheim, Jürgen Weitz, Stefanie Speidel
2019 J jnl
Int. J. Comput. Assist. Radiol. Surg.
Isabel Funke, Sören Torge Mees, Jürgen Weitz, Stefanie Speidel
2019 J jnl
CoRR
Isabel Funke, Sören Torge Mees, Jürgen Weitz, Stefanie Speidel
2018 conf
Image-Guided Procedures
Isabel Funke, Sebastian Bodenstedt, Carina Riediger, Jürgen Weitz, Stefanie Speidel
2018 B conf
INLG
Isabel Funke, Rim Helaoui, Aki Härmä
2018 conf
OR 2.0/CARE/CLIP/ISIC@MICCAI
Isabel Funke, Alexander Jenke, Sören Torge Mees, Jürgen Weitz, Stefanie Speidel, Sebastian Bodenstedt
2018 J jnl
CoRR
Isabel Funke, Alexander Jenke, Sören Torge Mees, Jürgen Weitz, Stefanie Speidel, Sebastian Bodenstedt
redb/extractors/elf_extractors/elf_exports.py
← Index redb/extractors/elf_extractors/elf_exports.py python
import inspect
from datetime import datetime, timezone
from typing import Any, List, Set

from elftools.elf.elffile import ELFFile
from elftools.common.exceptions import ELFError

from redb.extractors.enum import Tag
from redb.extractors.elf_extractor import ELFExtractor
from redb.models.dataclasses import ELFExport


class ELFExportExtractor(ELFExtractor):

    def __init__(
        self,
        filepath,
        log,
        exporters=None,
        index_prefix=None,
        elastic_index=None,
        known_benign=False,
        known_malicious=False,
        elf=None,
    ):
        super().__init__(
            filepath,
            log,
            exporters,
            index_prefix,
            elastic_index,
            known_benign,
            known_malicious,
            elf,
        )
        self.elf_exports = None
        self.elastic_index = self.index_prefix + "-elf_exports"
        self.log.debug(inspect.currentframe().f_code.co_name)

    def _get_exported_functions_from_symbols(self, elf) -> Set[str]:
        """Extract exported functions from symbol tables."""
        exported_functions = set()

        try:
            # Check both static (.symtab) and dynamic (.dynsym) symbol tables
            symbol_sections = ['.symtab', '.dynsym']

            for section_name in symbol_sections:
                section = elf.get_section_by_name(section_name)
                if not section or not hasattr(section, 'iter_symbols'):
                    continue

                for symbol in section.iter_symbols():
                    # Check if symbol is exported (defined and globally visible)
                    if (symbol.name and
                        symbol.entry.get('st_shndx', 0) != 'SHN_UNDEF' and  # Not undefined
                        symbol.entry.get('st_info', {}).get('bind') in ['STB_GLOBAL', 'STB_WEAK'] and  # Global or weak binding
                        symbol.entry.get('st_info', {}).get('type') in ['STT_FUNC', 'STT_OBJECT']):  # Function or object

                        # Additional checks for meaningful exports
                        if (symbol.entry.get('st_value', 0) > 0 or  # Has a value
                            symbol.entry.get('st_size', 0) > 0):    # Has a size
                            exported_functions.add(symbol.name)

        except Exception as e:
            self.log.error(f"Error extracting exported functions from symbols: {e}")

        return exported_functions

    def _get_exported_functions_from_dynamic_section(self, elf) -> Set[str]:
        """Extract exported functions information from dynamic section."""
        exported_functions = set()

        try:
            # Get the dynamic section
            dynamic_section = elf.get_section_by_name('.dynamic')
            if not dynamic_section:
                return exported_functions

            # Look for version definition sections that might indicate exports
            # This is complementary to symbol table analysis
            for tag in dynamic_section.iter_tags():
                if tag.entry.d_tag == 'DT_SONAME':
                    # If it has a SONAME, it's likely a shared library with exports
                    # The actual exports are still found in symbol tables
                    pass

        except Exception as e:
            self.log.error(f"Error extracting exports from dynamic section: {e}")

        return exported_functions

    def _filter_meaningful_exports(self, exports: Set[str]) -> Set[str]:
        """Filter out compiler-generated and internal symbols to focus on meaningful exports."""
        filtered_exports = set()

        # Common patterns to exclude (compiler-generated, internal symbols)
        exclude_patterns = [
            '_start',
            '_init',
            '_fini',
            '__libc_',
            '__gmon_start__',
            '_IO_stdin_used',
            '__data_start',
            '__bss_start',
            '_edata',
            '_end',
            '__TMC_END__',
            '_ITM_deregisterTMCloneTable',
            '_ITM_registerTMCloneTable',
            '__cxa_finalize',
            '__gxx_personality_v0',
            '_Jv_RegisterClasses'
        ]

        for export in exports:
            # Skip empty or very short names
            if not export or len(export) < 2:
                continue

            # Skip symbols that match exclude patterns
            skip = False
            for pattern in exclude_patterns:
                if export.startswith(pattern):
                    skip = True
                    break

            # Skip symbols that look like internal mangled names (but keep reasonable C++ names)
            if export.startswith('_Z') and len(export) > 50:  # Very long mangled names
                skip = True

            if not skip:
                filtered_exports.add(export)

        return filtered_exports

    def tag(self):
        return Tag.ELF_EXPORTS.value if hasattr(Tag, 'ELF_EXPORTS') else "elf_exports"

    def extract(self):
        try:
            self.log.debug(inspect.currentframe().f_code.co_name)

            def extract_data(elf):
                # Extract exported functions from multiple sources
                exported_functions = set()

                # From symbol tables (primary source)
                symbol_exports = self._get_exported_functions_from_symbols(elf)
                exported_functions.update(symbol_exports)

                # From dynamic section (supplementary)
                dynamic_exports = self._get_exported_functions_from_dynamic_section(elf)
                exported_functions.update(dynamic_exports)

                # Filter out compiler-generated and internal symbols
                meaningful_exports = self._filter_meaningful_exports(exported_functions)

                # Convert to sorted list for consistent output
                export_functions_list = sorted(list(meaningful_exports))

                # Return ELFExport dataclass
                return ELFExport(
                    elf_exports_total=len(export_functions_list),
                    elf_export_functions=export_functions_list,
                )

            if not self._is_elf_file():
                return None

            result = self._with_elf_file(extract_data)
            if result is None:
                return None

            self.elf_exports = result
            return self.elf_exports

        except Exception as e:
            self.log.error(f"Error extracting ELF exports {self.hash.sha256}: {e}")
            return None

    def prepare_export_data(self, exporter_type: str) -> Any:
        self.log.debug(inspect.currentframe().f_code.co_name)

        if exporter_type == "ElasticsearchExporter":
            return self.elf_exports
        elif exporter_type == "ClickHouseExporter":
            try:
                if not self.elf_exports:
                    return None

                # Prepare data array
                data = [[
                    self.sha256,
                    self.md5,
                    self.sha1,
                    self.elf_exports.elf_exports_total,
                    self.elf_exports.elf_export_functions,
                    datetime.now(timezone.utc)
                ]]

                column_names = [
                    'sha256', 'md5', 'sha1',
                    'elf_exports_total',
                    'elf_export_functions',
                    'analysis_date'
                ]

                if not data:
                    return None

                column_type_names = [
                    'FixedString(64)', 'FixedString(32)', 'FixedString(40)',
                    'UInt32',
                    'Array(LowCardinality(String))',
                    'DateTime64(3, \'UTC\')'
                ]

                return (data, column_names, column_type_names)

            except Exception as e:
                self.log.error(f"Error preparing export data: {e}")
                raise

    def get_clickhouse_table(self) -> str:
        return "redb_elf_exports"