Isaac S. Kohane

196 papers A* 3A 1B 4Misc 66Journal 110Unranked 12

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	EveryQuery: Zero-Shot Clinical Prediction via Task-Conditioned Pretraining over Electronic Health Records. CoRR Payal Chandak, Gregory Kondas, Isaac S. Kohane, Matthew B. A. McDermott
2026	J	`jnl`	Heterogenous effect of automated alerts on mortality. J. Am. Medical Informatics Assoc. Benjamin D. Wissel, Zana Percy, Tanner J. Zachem, Brett K. Beaulieu-Jones, Isaac S. Kohane, Stuart L. Goldstein, Emrah Gecili, Judith W. Dexheimer
2025	J	`jnl`	A global log for medical AI. CoRR Ayush Noori, Adam Rodman, Alan Karthikesalingam, Bilal A. Mateen, Christopher A. Longhurst, Daniel Yang, Dave deBronkart, Gauden Galea, Harold F. Wolf III, Jacob Waxman, Joshua C. Mandel, Juliana Rotich, Kenneth D. Mandl, Maryam Mustafa, Melissa Miles, Nigam H. Shah, Peter Lee, Robert Korom, Scott Mahoney, Seth Hain, Tien Yin Wong, Trevor Mundel, Vivek Natarajan, Noa Dagan, David A. Clifton, Ran D. Balicer, Isaac S. Kohane, Marinka Zitnik
2025	J	`jnl`	A standards-based approach to digital health research: implementing the people heart study. J. Am. Medical Informatics Assoc. Raheel Sayeed, David A. Kreda, Joshua C. Mandel, Bryan Larson, William J. Gordon, Kenneth D. Mandl, Isaac S. Kohane
2025	J	`jnl`	Few shot learning for phenotype-driven diagnosis of patients with rare genetic diseases. npj Digit. Medicine Emily Alsentzer, Michelle M. Li, Shilpa N. Kobren, Ayush Noori, Isaac S. Kohane, Marinka Zitnik
2025	J	`jnl`	GENIE: Generative Note Information Extraction model for structuring EHR data. CoRR Huaiyuan Ying, Hongyi Yuan, Jinsen Lu, Zitian Qu, Yang Zhao, Zhengyun Zhao, Isaac S. Kohane, Tianxi Cai, Sheng Yu
2025	J	`jnl`	Label efficient phenotyping for Long COVID using electronic health records. npj Digit. Medicine Chuan Hong, Jun Wen, Harrison G. Zhang, Vidul Ayakulangara Panickan, Doris Yang, Alicia W. Chen, Xin Xiong, Xuan Wang, Michele Morris, Sara Morini, Rahul Sangar, Andrew Dey, Malarkodi J. Samayamuthu, Katherine P. Liao, Clara-Lea Bonzel, Vidisha Tanukonda, Monika Maripuri, Jacqueline Honerlaw, Yuk-Lam Ho, Shyam Visweswaran, Isaac S. Kohane, Kelly Cho, Gabriel A. Brat, Zongqi Xia, Tianxi Cai
2025	J	`jnl`	One Patient, Many Contexts: Scaling Medical AI Through Contextual Intelligence. CoRR Michelle M. Li, Ben Y. Reis, Adam Rodman, Tianxi Cai, Noa Dagan, Ran D. Balicer, Joseph Loscalzo, Isaac S. Kohane, Marinka Zitnik
2024	—	`conf`	CGM-Freq: A Python Library for Frequency Domain Analysis of Continuous Glucose Monitoring Data. BHI Elizabeth Healey, Isaac S. Kohane
2024	J	`jnl`	Causal machine learning for predicting treatment outcomes. CoRR Stefan Feuerriegel, Dennis Frauen, Valentyn Melnychuk, Jonas Schweisthal, Konstantin Hess, Alicia Curth, Stefan Bauer, Niki Kilbertus, Isaac S. Kohane, Mihaela van der Schaar
2024	J	`jnl`	Implications of mappings between ICD clinical diagnosis codes and Human Phenotype Ontology terms. CoRR Amelia L. M. Tan, Rafael S. Gonçalves, William Yuan, Gabriel A. Brat, The Consortium for Clinical Characterization of COVID-19 by EHR, Robert Gentleman, Isaac S. Kohane
2024	—	`conf`	Model-Based Insulin Sensitivity and Beta-Cell Function Estimation from Daily Continuous Glucose Monitoring. EMBC Elizabeth Healey, Isaac S. Kohane
2024	J	`jnl`	Systematic Characterization of the Effectiveness of Alignment in Large Language Models for Categorical Decisions. CoRR Isaac S. Kohane
2024	—	`conf`	The Human Values Project. ML4H@NeurIPS Isaac S. Kohane
2023	A*	`conf`	Event Stream GPT: A Data Pre-processing and Modeling Library for Generative, Pre-trained Transformers over Continuous-time Sequences of Complex Events. NeurIPS Matthew B. A. McDermott, Bret Nestor, Peniel N. Argaw, Isaac S. Kohane
2023	J	`jnl`	Event Stream GPT: A Data Pre-processing and Modeling Library for Generative, Pre-trained Transformers over Continuous-time Sequences of Complex Events. CoRR Matthew B. A. McDermott, Bret Nestor, Peniel N. Argaw, Isaac S. Kohane
2022	J	`jnl`	Analytics to monitor local impact of the Protecting Access to Medicare Act's imaging clinical decision support requirements. J. Am. Medical Informatics Assoc. Vladimir I. Valtchinov, Shawn N. Murphy, Ronilda Lacson, Nikolay Ikonomov, Bingxue K. Zhai, Katherine P. Andriole, Justin F. Rousseau, Dick Hanson, Isaac S. Kohane, Ramin Khorasani
2022	—	`conf`	Building an i2b2-Based Population Repository for COVID-19 Research. MIE Miguel Pedrera-Jiménez, Noelia García-Barrio, Gema Hernandez-Ibarburu, Blanca Baselga, Alvar Javier Blanco-Martínez, Fernando Calvo-Boyero, Alba Gutiérrez-Sacristán, Víctor Quiros, Juan Luis Cruz-Bermúdez, José Luis Bernal-Sobrino, Laura Meloni, David Pérez-Rey, Matvey B. Palchuk, Isaac S. Kohane, Pablo Serrano
2022	J	`jnl`	Construction of extra-large scale screening tools for risks of severe mental illnesses using real world healthcare data. CoRR Dianbo Liu, Karmel W. Choi, Paulo Lizano, William Yuan, Kun-Hsing Yu, Jordan Smoller, Isaac S. Kohane
2022	—	`conf`	Identifying Heterogeneous Treatment Effects in Multiple Outcomes using Joint Confidence Intervals. ML4H@NeurIPS Peniel N. Argaw, Elizabeth Healey, Isaac S. Kohane
2022	J	`jnl`	Identifying Heterogeneous Treatment Effects in Multiple Outcomes using Joint Confidence Intervals. CoRR Peniel N. Argaw, Elizabeth Healey, Isaac S. Kohane
2022	J	`jnl`	International electronic health record-derived post-acute sequelae profiles of COVID-19 patients. npj Digit. Medicine Harrison G. Zhang, Arianna Dagliati, Zahra Shakeri Hossein Abad, Xin Xiong, Clara-Lea Bonzel, Zongqi Xia, Bryce W. Q. Tan, Paul Avillach, Gabriel A. Brat, Chuan Hong, Michele Morris, Shyam Visweswaran, Lav P. Patel, Alba Gutiérrez-Sacristán, David A. Hanauer, John H. Holmes, Malarkodi Jebathilagam Samayamuthu, Florence T. Bourgeois, Sehi L'Yi, Sarah E. Maidlow, Bertrand Moal, Shawn N. Murphy, Zachary H. Strasser, Antoine Neuraz, Kee Yuan Ngiam, Ne-Hooi Will Loh, Gilbert S. Omenn, Andrea Prunotto, Lauren A. Dalvin, Jeffrey G. Klann, Petra Schubert, Fernando J. Sanz Vidorreta, Vincent Benoit, Guillaume Verdy, Ramakanth Kavuluru, Hossein Estiri, Yuan Luo, Alberto Malovini, Valentina Tibollo, Riccardo Bellazzi, Kelly Cho, Yuk-Lam Ho, Amelia L. M. Tan, Byorn W. L. Tan, Nils Gehlenborg, Sara Lozano-Zahonero, Vianney Jouhet, Luca Chiovato, Bruce J. Aronow, Emma M. S. Toh, Wei Gen Scott Wong, Sara Pizzimenti, Kavishwar B. Wagholikar, Mauro Bucalo, Tianxi Cai, Andrew M. South, Isaac S. Kohane, Griffin M. Weber
2022	J	`jnl`	Multi-PheWAS intersection approach to identify sex differences across comorbidities in 59 140 pediatric patients with autism spectrum disorder. J. Am. Medical Informatics Assoc. Alba Gutiérrez-Sacristán, Carlos Sáez, Carlos De Niz, Niloofar Jalali, Thomas N. Desain, Ranjay Kumar, Joany M. Zachariasse, Kathe P. Fox, Nathan P. Palmer, Isaac S. Kohane, Paul Avillach
2022	J	`jnl`	SurvMaximin: Robust federated approach to transporting survival risk prediction models. J. Biomed. Informatics Xuan Wang, Harrison G. Zhang, Xin Xiong, Chuan Hong, Griffin M. Weber, Gabriel A. Brat, Clara-Lea Bonzel, Yuan Luo, Rui Duan, Nathan P. Palmer, Meghan R. Hutch, Alba Gutiérrez-Sacristán, Riccardo Bellazzi, Luca Chiovato, Kelly Cho, Arianna Dagliati, Hossein Estiri, Noelia García-Barrio, Romain Griffier, David A. Hanauer, Yuk-Lam Ho, John H. Holmes, Mark S. Keller, Jeffrey G. Klann, Sehi L'Yi, Sara Lozano-Zahonero, Sarah E. Maidlow, Adeline Makoudjou, Alberto Malovini, Bertrand Moal, Jason H. Moore, Michele Morris, Danielle L. Mowery, Shawn N. Murphy, Antoine Neuraz, Kee Yuan Ngiam, Gilbert S. Omenn, Lav P. Patel, Miguel Pedrera-Jiménez, Andrea Prunotto, Malarkodi J. Samayamuthu, Fernando J. Sanz Vidorreta, Emily Schriver, Petra Schubert, Pablo Serrano-Balazote, Andrew M. South, Amelia L. M. Tan, Byorn W. L. Tan, Valentina Tibollo, Patric Tippmann, Shyam Visweswaran, Zongqi Xia, William Yuan, Daniela Zöller, Isaac S. Kohane, Paul Avillach, Zijian Guo, Tianxi Cai
2021	J	`jnl`	ATLAS: an automated association test using probabilistically linked health records with application to genetic studies. J. Am. Medical Informatics Assoc. Harrison G. Zhang, Boris P. Hejblum, Griffin M. Weber, Nathan P. Palmer, Susanne E. Churchill, Peter Szolovits, Shawn N. Murphy, Katherine P. Liao, Isaac S. Kohane, Tianxi Cai
2021	—	`conf`	Attentive Multiview Text Representation for Differential Diagnosis. ACL/IJCNLP (2) Hadi Amiri, Mitra Mohtarami, Isaac S. Kohane
2021	Misc	`conf`	Cross-modal representation alignment of molecular structure and perturbation-induced transcriptional profiles. PSB Samuel G. Finlayson, Matthew B. A. McDermott, Alex V. Pickering, Scott L. Lipnick, Isaac S. Kohane
2021	J	`jnl`	Finding commonalities in rare diseases through the undiagnosed diseases network. J. Am. Medical Informatics Assoc. Josephine Yates, Alba Gutiérrez-Sacristán, Vianney Jouhet, Kimberly Leblanc, Cecilia Esteves, Thomas N. Desain, Nick Benik, Jason Stedman, Nathan P. Palmer, Guillaume Mellon, Isaac S. Kohane, Paul Avillach
2021	J	`jnl`	Machine learning for patient risk stratification: standing on, or looking over, the shoulders of clinicians? npj Digit. Medicine Brett K. Beaulieu-Jones, William Yuan, Gabriel A. Brat, Andrew L. Beam, Griffin M. Weber, Marshall Ruffin, Isaac S. Kohane
2021	J	`jnl`	Patient-led data sharing for clinical bioinformatics research: USCDI and beyond. J. Am. Medical Informatics Assoc. William J. Gordon, Daniel Gottlieb, David A. Kreda, Joshua C. Mandel, Kenneth D. Mandl, Isaac S. Kohane
2021	J	`jnl`	Use of electronic health records to support a public health response to the COVID-19 pandemic in the United States: a perspective from 15 academic medical centers. J. Am. Medical Informatics Assoc. Subha Madhavan, Lisa Bastarache, Jeffrey S. Brown, Atul J. Butte, David A. Dorr, Peter J. Embí, Charles P. Friedman, Kevin B. Johnson, Jason H. Moore, Isaac S. Kohane, Philip R. O. Payne, Jessica D. Tenenbaum, Mark G. Weiner, Adam B. Wilcox, Lucila Ohno-Machado
2021	J	`jnl`	Validation of an internationally derived patient severity phenotype to support COVID-19 analytics from electronic health record data. J. Am. Medical Informatics Assoc. Jeffrey G. Klann, Hossein Estiri, Griffin M. Weber, Bertrand Moal, Paul Avillach, Chuan Hong, Amelia L. M. Tan, Brett K. Beaulieu-Jones, Victor M. Castro, Thomas Maulhardt, Alon Geva, Alberto Malovini, Andrew M. South, Shyam Visweswaran, Michele Morris, Malarkodi J. Samayamuthu, Gilbert S. Omenn, Kee Yuan Ngiam, Kenneth D. Mandl, Martin Boeker, Karen L. Olson, Danielle L. Mowery, Robert W. Follett, David A. Hanauer, Riccardo Bellazzi, Jason H. Moore, Ne-Hooi Will Loh, Douglas S. Bell, Kavishwar B. Wagholikar, Luca Chiovato, Valentina Tibollo, Siegbert Rieg, Anthony L. L. J. Li, Vianney Jouhet, Emily Schriver, Zongqi Xia, Meghan Hutch, Yuan Luo, Isaac S. Kohane, Gabriel A. Brat, Shawn N. Murphy
2020	J	`jnl`	An interactive online dashboard for tracking COVID-19 in U.S. counties, cities, and states in real time. J. Am. Medical Informatics Assoc. Benjamin D. Wissel, P. J. Van Camp, Michal Kouril, Chad Weis, Tracy A. Glauser, Peter S. White, Isaac S. Kohane, Judith W. Dexheimer
2020	J	`jnl`	Classifying non-small cell lung cancer types and transcriptomic subtypes using convolutional neural networks. J. Am. Medical Informatics Assoc. Kun-Hsing Yu, Feiran Wang, Gerald J. Berry, Christopher Ré, Russ B. Altman, Michael Snyder, Isaac S. Kohane
2020	Misc	`conf`	Clinical Concept Embeddings Learned from Massive Sources of Multimodal Medical Data. PSB Andrew L. Beam, Benjamin Kompa, Allen Schmaltz, Inbar Fried, Griffin M. Weber, Nathan P. Palmer, Xu Shi, Tianxi Cai, Isaac S. Kohane
2020	Misc	`conf`	Deciphering Serous Ovarian Carcinoma Histopathology and Platinum Response by Convolutional Neural Networks. AMIA Kun-Hsing Yu, Vincent Hu, Feiran Wang, Ursula Matulonis, George Mutter, Jeffrey Golden, Isaac S. Kohane
2020	J	`jnl`	Deep Learning Benchmarks on L1000 Gene Expression Data. IEEE ACM Trans. Comput. Biol. Bioinform. Matthew B. A. McDermott, Jennifer Wang, Wen-Ning Zhao, Steven Sheridan, Peter Szolovits, Isaac S. Kohane, Stephen J. Haggarty, Roy H. Perlis
2020	J	`jnl`	International electronic health record-derived COVID-19 clinical course profiles: the 4CE consortium. npj Digit. Medicine Gabriel A. Brat, Griffin M. Weber, Nils Gehlenborg, Paul Avillach, Nathan P. Palmer, Luca Chiovato, James J. Cimino, Lemuel R. Waitman, Gilbert S. Omenn, Alberto Malovini, Jason H. Moore, Brett K. Beaulieu-Jones, Valentina Tibollo, Shawn N. Murphy, Sehi L'Yi, Mark S. Keller, Riccardo Bellazzi, David A. Hanauer, Arnaud Serret-Larmande, Alba Gutiérrez-Sacristán, John J. Holmes, Douglas S. Bell, Kenneth D. Mandl, Robert W. Follett, Jeffrey G. Klann, Douglas A. Murad, Luigia Scudeller, Mauro Bucalo, Katie G. Kirchoff, Jean B. Craig, Jihad S. Obeid, Vianney Jouhet, Romain Griffier, Sébastien Cossin, Bertrand Moal, Lav P. Patel, Antonio Bellasi, Hans-Ulrich Prokosch, Detlef Kraska, Piotr Sliz, Amelia L. M. Tan, Kee Yuan Ngiam, Alberto Zambelli, Danielle L. Mowery, Emily Schriver, Batsal Devkota, Robert L. Bradford, Mohamad Daniar, Christel Daniel, Vincent Benoit, Romain Bey, Nicolas Paris, Patricia Serre, Nina Orlova, Julien Dubiel, Martin Hilka, Anne-Sophie Jannot, Stéphane Bréant, Judith Leblanc, Nicolas Griffon, Anita Burgun, Mélodie Bernaux, Arnaud Sandrin, Elisa Salamanca, Sylvie Cormont, Thomas Ganslandt, Tobias Gradinger, Julien Champ, Martin Boeker, Patricia Martel, Loic Estève, Alexandre Gramfort, Olivier Grisel, Damien Leprovost, Thomas Moreau, Gaël Varoquaux, Jill-Jênn Vie, Demian Wassermann, Arthur Mensch, Charlotte Caucheteux, Christian Haverkamp, Guillaume Lemaitre, Silvano Bosari, Ian D. Krantz, Andrew M. South, Tianxi Cai, Isaac S. Kohane
2020	J	`jnl`	Meta-analysis of Caenorhabditis elegans single-cell developmental data reveals multi-frequency oscillation in gene activation. Bioinform. Luke A. D. Hutchison, Bonnie Berger, Isaac S. Kohane
2020	J	`jnl`	Scalability and cost-effectiveness analysis of whole genome-wide association studies on Google Cloud Platform and Amazon Web Services. J. Am. Medical Informatics Assoc. Inès Krissaane, Carlos De Niz, Alba Gutiérrez-Sacristán, Gabor Korodi, Nneka Ede, Ranjay Kumar, Jessica Lyons, Arjun K. Manrai, Chirag J. Patel, Isaac S. Kohane, Paul Avillach
2019	J	`jnl`	Approaching Small Molecule Prioritization as a Cross-Modal Information Retrieval Task through Coordinated Representation Learning. CoRR Samuel G. Finlayson, Matthew B. A. McDermott, Alex V. Pickering, Scott L. Lipnick, William Yuan, Isaac S. Kohane
2019	J	`jnl`	Automated grouping of medical codes via multiview banded spectral clustering. J. Biomed. Informatics Luwan Zhang, Yichi Zhang, Tianrun A. Cai, Yuri Ahuja, Zeling He, Yuk-Lam Ho, Andrew Beam, Kelly Cho, Robert J. Carroll, Joshua C. Denny, Isaac S. Kohane, Katherine P. Liao, Tianxi Cai
2019	J	`jnl`	Batch correction evaluation framework using a-priori gene-gene associations: applied to the GTEx dataset. BMC Bioinform. Judith Somekh, Shai S. Shen-Orr, Isaac S. Kohane
2019	Misc	`conf`	Classifying Non-Small Cell Lung Cancer Histopathology Types and Transcriptomic Subtypes using Convolutional Neural Networks. AMIA Kun-Hsing Yu, Feiran Wang, Gerald J. Berry, Christopher Ré, Russ B. Altman, Michael Snyder, Isaac S. Kohane
2019	J	`jnl`	Feature extraction for phenotyping from semantic and knowledge resources. J. Biomed. Informatics Wenxin Ning, Stephanie Chan, Andrew Beam, Ming Yu, Alon Geva, Katherine P. Liao, Mary Mullen, Kenneth D. Mandl, Isaac S. Kohane, Tianxi Cai, Sheng Yu
2019	J	`jnl`	High-throughput multimodal automated phenotyping (MAP) with application to PheWAS. J. Am. Medical Informatics Assoc. Katherine P. Liao, Jiehuan Sun, Tianrun A. Cai, Nicholas B. Link, Chuan Hong, Jie Huang, Jennifer E. Huffman, Jessica L. Gronsbell, Yichi Zhang, Yuk-Lam Ho, Victor M. Castro, Vivian S. Gainer, Shawn N. Murphy, Christopher J. O'Donnell, John Michael Gaziano, Kelly Cho, Peter Szolovits, Isaac S. Kohane, Sheng Yu
2019	Misc	`conf`	Learning Contextual Hierarchical Structure of Medical Concepts with Poincairé Embeddings to Clarify Phenotypes. PSB Brett K. Beaulieu-Jones, Isaac S. Kohane, Andrew L. Beam
2019	Misc	`conf`	Learning to Estimate Nutrition Facts from Food Descriptions. AMIA Hadi Amiri, Andrew Beam, Isaac S. Kohane
2018	J	`jnl`	Adversarial Attacks Against Medical Deep Learning Systems. CoRR Samuel G. Finlayson, Isaac S. Kohane, Andrew L. Beam
2018	J	`jnl`	Clinical Concept Embeddings Learned from Massive Sources of Medical Data. CoRR Andrew L. Beam, Benjamin Kompa, Inbar Fried, Nathan P. Palmer, Xu Shi, Tianxi Cai, Isaac S. Kohane
2018	J	`jnl`	Enabling phenotypic big data with PheNorm. J. Am. Medical Informatics Assoc. Sheng Yu, Yumeng Ma, Jessica L. Gronsbell, Tianrun A. Cai, Ashwin N. Ananthakrishnan, Vivian S. Gainer, Susanne E. Churchill, Peter Szolovits, Shawn N. Murphy, Isaac S. Kohane, Katherine P. Liao, Tianxi Cai
2018	Misc	`conf`	High-Throughput Multimodal Automated Phenotyping (MAP) Incorporating Natural Language Processing with Application to PheWAS. AMIA Katherine P. Liao, Jiehuan Sun, Tianrun A. Cai, Nicholas B. Link, Chuan Hong, Jie Huang, Jennifer E. Huffman, Jessica L. Gronsbell, Lauren Costa, Victor M. Castro, Vivian S. Gainer, Shawn N. Murphy, John Michael Gaziano, Kelly Cho, Peter Szolovits, Isaac S. Kohane, Sheng Yu, Tianxi Cai
2018	J	`jnl`	Learning Contextual Hierarchical Structure of Medical Concepts with Poincairé Embeddings to Clarify Phenotypes. CoRR Brett K. Beaulieu-Jones, Isaac S. Kohane, Andrew L. Beam
2018	J	`jnl`	PheProb: probabilistic phenotyping using diagnosis codes to improve power for genetic association studies. J. Am. Medical Informatics Assoc. Jennifer A. Sinnott, Fiona Cai, Sheng Yu, Boris P. Hejblum, Chuan Hong, Isaac S. Kohane, Katherine P. Liao
2018	J	`jnl`	Rcupcake: an R package for querying and analyzing biomedical data through the BD2K PIC-SURE RESTful API. Bioinform. Alba Gutiérrez-Sacristán, Romain Guedj, Gabor Korodi, Jason Stedman, Laura Inés Furlong, Chirag J. Patel, Isaac S. Kohane, Paul Avillach
2018	J	`jnl`	Towards generative adversarial networks as a new paradigm for radiology education. CoRR Samuel G. Finlayson, Hyunkwang Lee, Isaac S. Kohane, Luke Oakden-Rayner
2017	—	`conf`	Creating a Patient Information Commons from Multiple Research Informatics Platforms. CRI Shawn N. Murphy, Christopher D. Herrick, Michael Mendis, Lori C. Phillips, Wayne Chan, Alyssa J. Porter, Griffin M. Weber, Susanne E. Churchill, Isaac S. Kohane
2017	Misc	`conf`	High-throughput Phenotyping via Denoised Normal Mixture Transformation. AMIA Sheng Yu, Yumeng Ma, Jessica L. Gronsbell, Katherine P. Liao, Tianrun A. Cai, Ashwin N. Ananthakrishnan, Vivian S. Gainer, Susanne E. Churchill, Peter Szolovits, Shawn N. Murphy, Isaac S. Kohane, Tianxi Cai
2017	Misc	`conf`	Subtype Discovery for Autism Spectrum Disorder by Comorbidity Analysis. AMIA Kun-Hsing Yu, Nathan P. Palmer, Isaac S. Kohane
2017	J	`jnl`	Surrogate-assisted feature extraction for high-throughput phenotyping. J. Am. Medical Informatics Assoc. Sheng Yu, Abhishek Chakrabortty, Katherine P. Liao, Tianrun A. Cai, Ashwin N. Ananthakrishnan, Vivian S. Gainer, Susanne E. Churchill, Peter Szolovits, Shawn N. Murphy, Isaac S. Kohane, Tianxi Cai
2016	J	`jnl`	A model-driven methodology for exploring complex disease comorbidities applied to autism spectrum disorder and inflammatory bowel disease. J. Biomed. Informatics Judith Somekh, Mor Peleg, Alal Eran, Itay Koren, Ariel Feiglin, Alik Demishtein, Ruth Shiloh, Monika Heiner, Sek Won Kong, Zvulun Elazar, Isaac S. Kohane
2016	Misc	`conf`	Characterizing the Fever Effect in Autism Spectrum Disorder. AMIA Efrat Muller, Alal Eran, Denis Agniel, Isaac S. Kohane, Eitan Bachmat
2016	J	`jnl`	Developing an Algorithm to Detect Early Childhood Obesity in Two Tertiary Pediatric Medical Centers. Appl. Clin. Inform. Cassandra Brady, Bahram Namjou, Stephanie Kennebeck, Jonathan Bickel, Nandan Patibandla, Yizhao Ni, Sara Van Driest, Lixin Chen, Ashton Roach, Beth Cobb, Jacqueline Kirby, Joshua C. Denny, Lisa Bailey-Davis, Marc S. Williams, Keith Marsolo, Imre Solti, Ingrid A. Holm, John Harley, Isaac S. Kohane, Guergana Savova, Nancy Crimmins, Todd Lingren, Vidhu Thaker
2016	Misc	`conf`	Reproducible and Shareable Quantifications of Pathogenicity. PSB Arjun K. Manrai, Brice L. Wang, Chirag J. Patel, Isaac S. Kohane
2016	J	`jnl`	SMART on FHIR: a standards-based, interoperable apps platform for electronic health records. J. Am. Medical Informatics Assoc. Joshua C. Mandel, David A. Kreda, Kenneth D. Mandl, Isaac S. Kohane, Rachel B. Ramoni
2016	J	`jnl`	SMART precision cancer medicine: a FHIR-based app to provide genomic information at the point of care. J. Am. Medical Informatics Assoc. Jeremy L. Warner, Matthew J. Rioth, Kenneth D. Mandl, Joshua C. Mandel, David A. Kreda, Isaac S. Kohane, Daniel Carbone, Ross Oreto, Lucy Wang, Shilin Zhu, Heming Yao, Gil Alterovitz
2016	Misc	`conf`	Session Introduction. PSB Arjun K. Manrai, Chirag J. Patel, Nils Gehlenborg, Nicholas P. Tatonetti, John P. A. Ioannidis, Isaac S. Kohane
2016	Misc	`conf`	The Spectrum of Insomnia-Associated Comorbidities in an Electronic Medical Records Cohort. AMIA Uri Kartoun, Andrew Beam, Jennifer Pai, Arnaub Chatterjee, Timothy P. Fitzgerald, Isaac S. Kohane, Stanley Y. Shaw
2016	J	`jnl`	ksRepo: a generalized platform for computational drug repositioning. BMC Bioinform. Adam S. Brown, Sek Won Kong, Isaac S. Kohane, Chirag J. Patel
2015	Misc	`conf`	Demonstrating the Advantages of Applying Data Mining Techniques on Time-Dependent Electronic Medical Records. AMIA Uri Kartoun, Vishesh Kumar, Su-Chun Cheng, Sheng Yu, Katherine P. Liao, Elizabeth W. Karlson, Ashwin N. Ananthakrishnan, Zongqi Xia, Vivian S. Gainer, Andrew Cagan, Guergana Savova, Pei J. Chen, Shawn N. Murphy, Susanne E. Churchill, Isaac S. Kohane, Peter Szolovits, Tianxi Cai, Stanley Y. Shaw
2015	J	`jnl`	Increasing the efficiency of trial-patient matching: automated clinical trial eligibility Pre-screening for pediatric oncology patients. BMC Medical Informatics Decis. Mak. Yizhao Ni, Jordan Wright, John Perentesis, Todd Lingren, Louise Deléger, Megan Kaiser, Isaac S. Kohane, Imre Solti
2015	J	`jnl`	SMART on FHIR Genomics: facilitating standardized clinico-genomic apps. J. Am. Medical Informatics Assoc. Gil Alterovitz, Jeremy L. Warner, Peijin Zhang, Yishen Chen, Mollie Ullman-Cullere, David A. Kreda, Isaac S. Kohane
2015	J	`jnl`	Toward high-throughput phenotyping: unbiased automated feature extraction and selection from knowledge sources. J. Am. Medical Informatics Assoc. Sheng Yu, Katherine P. Liao, Stanley Y. Shaw, Vivian S. Gainer, Susanne E. Churchill, Peter Szolovits, Shawn N. Murphy, Isaac S. Kohane, Tianxi Cai
2014	J	`jnl`	Are Meaningful Use Stage 2 certified EHRs ready for interoperability? Findings from the SMART C-CDA Collaborative. J. Am. Medical Informatics Assoc. John D. D'Amore, Joshua C. Mandel, David A. Kreda, Ashley Swain, George A. Koromia, Sumesh Sundareswaran, Liora Alschuler, Robert H. Dolin, Kenneth D. Mandl, Isaac S. Kohane, Rachel B. Ramoni
2014	J	`jnl`	Brief communication: Scalable Collaborative Infrastructure for a Learning Healthcare System (SCILHS): Architecture. J. Am. Medical Informatics Assoc. Kenneth D. Mandl, Isaac S. Kohane, Douglas McFadden, Griffin M. Weber, Marc D. Natter, Joshua C. Mandel, Sebastian Schneeweiss, Sarah Weiler, Jeffrey G. Klann, Jonathan P. Bickel, William G. Adams, Yaorong Ge, Xiaobo Zhou, James Perkins, Keith Marsolo, Elmer V. Bernstam, John Showalter, Alexander Quarshie, Elizabeth O. Ofili, George Hripcsak, Shawn N. Murphy
2014	Misc	`conf`	Improving the Review of Individual Patients in a Clinical Data Repository. AMIA Nich Wattanasin, Michael Mendis, Kenneth D. Mandl, Isaac S. Kohane, Shawn N. Murphy
2014	Misc	`conf`	Informatics for Integrating Biology and the Bedside (I2b2) Clinical Trials (CT) Patient Ascertainment Suite. AMIA Shawn N. Murphy, Nich Wattanasin, Susanne E. Churchill, Isaac S. Kohane, Vivian S. Gainer
2014	—	`conf`	SecurityEmpire: Development and Evaluation of a Digital Game to Promote Cybersecurity Education. 3GSE Marc Olano, Alan T. Sherman, Linda Oliva, Ryan Cox, Deborah Firestone, Oliver Kubik, Milind Patil, John Seymour, Isaac S. Kohane, Donna Thomas
2014	Misc	`conf`	Smart on FHIR. AMIA David McCallie, Joshua C. Mandel, Stanley M. Huff, Kenneth D. Mandl, Isaac S. Kohane
2013	J	`jnl`	Improved de-identification of physician notes through integrative modeling of both public and private medical text. BMC Medical Informatics Decis. Mak. Andrew J. McMurry, Britt Fitch, Guergana Savova, Isaac S. Kohane, Ben Y. Reis
2013	Misc	`conf`	Integrating the CCDA for Real-Time Patient Data in the i2b2 Platform. AMIA Nich Wattanasin, Michael Mendis, Joshua C. Mandel, Rachel B. Ramoni, Kenneth D. Mandl, Isaac S. Kohane, Shawn N. Murphy
2013	Misc	`conf`	Organization and Transformation of Next-Generation Sequencing Data for Use within i2b2. AMIA Lori C. Phillips, Shawn N. Murphy, Isaac S. Kohane
2013	J	`jnl`	Toward More Transparent and Reproducible Omics Studies Through a Common Metadata Checklist and Data Publications. Big Data Eugene Kolker, Vural Özdemir, Lennart Martens, William Hancock, Gordon A. Anderson, Nathaniel Anderson, Sukru Aynacioglu, Ancha V. Baranova, Shawn R. Campagna, Rui Chen, John Choiniere, Stephen P. Dearth, Wu-chun Feng, Lynnette Ferguson, Geoffrey C. Fox, Dmitrij Frishman, Robert Grossman, Allison P. Heath, Roger Higdon, Mara H. Hutz, Imre Janko, Lihua Jiang, Sanjay Joshi, Alexander E. Kel, Joseph W. Kemnitz, Isaac S. Kohane, Natali Kolker, Doron Lancet, Elaine Lee, Weizhong Li, Andrey Lisitsa, Adrian Llerena, Courtney MacNealy-Koch, Jean-Claude Marshall, Paola Masuzzo, Amanda May, George Mias, Matthew E. Monroe, Elizabeth Montague, Sean D. Mooney, Alexey I. Nesvizhskii, Santosh Noronha, Gilbert S. Omenn, Harsha Rajasimha, Preveen Ramamoorthy, Jerry Sheehan, Larry Smarr, Charles V. Smith, Todd Smith, Michael Snyder, Srikanth Rapole, Sanjeeva Srivastava, Larissa Stanberry, Elizabeth Stewart, Stefano Toppo, Peter Uetz, Kenneth Verheggen, Brynn H. Voy, Louise Warnich, Steven W. Wilhelm, Gregory Yandl
2012	J	`jnl`	A translational engine at the national scale: informatics for integrating biology and the bedside. J. Am. Medical Informatics Assoc. Isaac S. Kohane, Susanne E. Churchill, Shawn N. Murphy
2012	Misc	`conf`	Apps to display patient data, making SMART available in the i2b2 platform. AMIA Nich Wattanasin, Alyssa Porter, Stella Ubaha, Michael Mendis, Lori C. Phillips, Joshua C. Mandel, Rachel L. Ramoni, Kenneth D. Mandl, Isaac S. Kohane, Shawn N. Murphy
2012	Misc	`conf`	Integrating Substitutable Medical Apps, Reusable Technologies (SMART) in the i2b2 Platform. AMIA Nich Wattanasin, Alyssa Porter, Stella Ubaha, Michael Mendis, Lori C. Phillips, Joshua C. Mandel, Rachel L. Ramoni, Kenneth D. Mandl, Isaac S. Kohane, Shawn N. Murphy
2012	J	`jnl`	Making sense out of massive data by going beyond differential expression. Proc. Natl. Acad. Sci. USA Patrick R. Schmid, Nathan P. Palmer, Isaac S. Kohane, Bonnie Berger
2012	J	`jnl`	Quantifying the white blood cell transcriptome as an accessible window to the multiorgan transcriptome. Bioinform. Isaac S. Kohane, Vladimir I. Valtchinov
2012	J	`jnl`	Quantifying the white blood cell transcriptome as an accessible window to the multiorgan transcriptome. Bioinform. Isaac S. Kohane, Vladimir I. Valtchinov
2012	Misc	`conf`	Supporting Population Queries and Clinical Trials in i2b2 with SMART. AMIA Shawn N. Murphy, Michael Mendis, Nich Wattanasin, Alyssa Porter, Stella Ubaha, Lori C. Phillips, Joshua C. Mandel, Rachel L. Ramoni, Kenneth D. Mandl, Isaac S. Kohane
2012	J	`jnl`	Technical desiderata for the integration of genomic data into Electronic Health Records. J. Biomed. Informatics Daniel R. Masys, Gail P. Jarvik, Neil F. Abernethy, Nicholas R. Anderson, George J. Papanicolaou, Dina N. Paltoo, Mark A. Hoffman, Isaac S. Kohane, Howard P. Levy
2012	J	`jnl`	The SMART Platform: early experience enabling substitutable applications for electronic health records. J. Am. Medical Informatics Assoc. Kenneth D. Mandl, Joshua C. Mandel, Shawn N. Murphy, Elmer V. Bernstam, Rachel L. Ramoni, David A. Kreda, J. Michael McCoy, Ben Adida, Isaac S. Kohane
2011	J	`jnl`	Automated validation of genetic variants from large databases: ensuring that variant references refer to the same genomic locations. Bioinform. Mark Y. Tong, Christopher A. Cassa, Isaac S. Kohane
2011	J	`jnl`	BioNOT: A searchable database of biomedical negated sentences. BMC Bioinform. Shashank Agarwal, Hong Yu, Isaac S. Kohane
2011	J	`jnl`	Inferring cell cycle feedback regulation from gene expression data. J. Biomed. Informatics Fulvia Ferrazzi, Felix B. Engel, Erxi Wu, Annie P. Moseman, Isaac S. Kohane, Riccardo Bellazzi, Marco Ramoni
2011	J	`jnl`	Information Technology research challenges for healthcare: from discovery to delivery. SIGHIT Rec. Susan L. Graham, Deborah Estrin, Eric Horvitz, Isaac S. Kohane, Elizabeth D. Mynatt, Ida Sim
2011	J	`jnl`	Marco Ramoni: an appreciation of academic achievement. J. Am. Medical Informatics Assoc. Isaac S. Kohane, Peter Szolovits
2011	J	`jnl`	Strategies for maintaining patient privacy in i2b2. J. Am. Medical Informatics Assoc. Shawn N. Murphy, Vivian S. Gainer, Michael Mendis, Susanne E. Churchill, Isaac S. Kohane
2010	J	`jnl`	A novel approach to investigate tissue-specific trinucleotide repeat instability. BMC Syst. Biol. Jong-Min Lee, Jie Zhang, Andrew I. Su, John R. Walker, Tim Wiltshire, Kihwa Kang, Ella Dragileva, Tammy Gillis, Edith T. Lopez, Marie-Josee Boily, Michel Cyr, Isaac S. Kohane, James F. Gusella, Marcy E. MacDonald, Vanessa C. Wheeler
2010	—	`conf`	Practical Health Information Exchange using a Personally Controlled Health Record. HealthSec Ben Adida, Isaac S. Kohane, Kenneth D. Mandl
2010	J	`jnl`	Serving the enterprise and beyond with informatics for integrating biology and the bedside (i2b2). J. Am. Medical Informatics Assoc. Shawn N. Murphy, Griffin M. Weber, Michael Mendis, Vivian S. Gainer, Henry C. Chueh, Susanne E. Churchill, Isaac S. Kohane
2009	J	`jnl`	Application of Information Technology: The Shared Health Research Information Network (SHRINE): A Prototype Federated Query Tool for Clinical Data Repositories. J. Am. Medical Informatics Assoc. Griffin M. Weber, Shawn N. Murphy, Andrew J. McMurry, Douglas MacFadden, Daniel J. Nigrin, Susanne E. Churchill, Isaac S. Kohane
2009	J	`jnl`	Integration of heterogeneous expression data sets extends the role of the retinol pathway in diabetes and insulin resistance. Bioinform. Peter J. Park, Sek Won Kong, Toma Tebaldi, Weil R. Lai, Simon Kasif, Isaac S. Kohane
2009	—	`conf`	Interacting with eHealth: towards grand challenges for HCI. CHI Extended Abstracts m. c. schraefel, Paul André, Ryen White, Desney S. Tan, Tim Berners-Lee, Sunny Consolvo, Robert Jacobs, Isaac S. Kohane, Christopher A. Le Dantec, Lena Mamykina, Gary Marsden, Ben Shneiderman, Peter Szolovits, Daniel J. Weitzner
2009	J	`jnl`	Research Paper: Prediction of Chronic Obstructive Pulmonary Disease (COPD) in Asthma Patients Using Electronic Medical Records. J. Am. Medical Informatics Assoc. Blanca E. Himes, Yi Dai, Isaac S. Kohane, Scott T. Weiss, Marco Ramoni
2008	Misc	`conf`	Characterization of Patients who Suffer Asthma Exacerbations using Data Extracted from Electronic Medical Records. AMIA Blanca E. Himes, Isaac S. Kohane, Marco Ramoni, Scott T. Weiss
2008	J	`jnl`	Letters to the Editor: No Structure Before Its Time. J. Am. Medical Informatics Assoc. Isaac S. Kohane, Özlem Uzuner
2008	J	`jnl`	Viewpoint Paper: Identifying Patient Smoking Status from Medical Discharge Records. J. Am. Medical Informatics Assoc. Özlem Uzuner, Ira Goldstein, Yuan Luo, Isaac S. Kohane
2007	Misc	`conf`	Architecture of the Open-source Clinical Research Chart from Informatics for Integrating Biology and the Bedside. AMIA Shawn N. Murphy, Michael Mendis, Kristel Hackett, Rajesh Kuttan, Wensong Pan, Lori C. Phillips, Vivian S. Gainer, David Berkowicz, John P. Glaser, Isaac S. Kohane, Henry C. Chueh
2007	J	`jnl`	Model Formulation: A Self-scaling, Distributed Information Architecture for Public Health, Research, and Clinical Care. J. Am. Medical Informatics Assoc. Andrew J. McMurry, Clint A. Gilbert, Ben Y. Reis, Henry C. Chueh, Isaac S. Kohane, Kenneth D. Mandl
2006	B	`conf`	Dynamic Bayesian Networks in Modelling Cellular Systems: a Critical Appraisal on Simulated Data. CBMS Fulvia Ferrazzi, Paola Sebastiani, Isaac S. Kohane, Marco Ramoni, Riccardo Bellazzi
2006	Misc	`conf`	Integration of Clinical and Genetic Data in the i2b2 Architecture. AMIA Shawn N. Murphy, Michael Mendis, David A. Berkowitz, Isaac S. Kohane, Henry C. Chueh
2006	Misc	`conf`	Integration of the Personally Controlled Electronic Medical Record into a Regional and Data Exchange: A National Demonstration. AMIA William W. Simons, John D. Halamka, Isaac S. Kohane, Daniel J. Nigrin, Nathan Finstein, Kenneth D. Mandl
2006	J	`jnl`	Lower expression of genes near microRNA in BMC Bioinform. Hidenori Inaoka, Yutaka Fukuoka, Isaac S. Kohane
2006	Misc	`conf`	Mapping Tool for Maintaining Vocabulary Relationships. AMIA Kristel Hackett, Isaac S. Kohane, Henry C. Chueh, Shawn N. Murphy
2006	J	`jnl`	START: an automated tool for serial analysis of chromatin occupancy data. Bioinform. Voichita D. Marinescu, Isaac S. Kohane, Tae-Kyung Kim, David A. Harmin, Michael E. Greenberg, Alberto Riva
2005	J	`jnl`	CrossChip: a system supporting comparative analysis of different generations of Affymetrix arrays. Bioinform. Sek Won Kong, Kyu Baek Hwang, Richard D. Kim, Byoung-Tak Zhang, Steven A. Greenberg, Isaac S. Kohane, Peter J. Park
2005	Misc	`conf`	DITTO - a Tool for Identification of Patient Cohorts from the Text of Physician Notes in the Electronic Medical Record. AMIA Alexander Turchin, Merri L. Pendergrass, Isaac S. Kohane
2005	J	`jnl`	MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes. BMC Bioinform. Voichita D. Marinescu, Isaac S. Kohane, Alberto Riva
2005	J	`jnl`	Model Formulation: The PING Personally Controlled Electronic Medical Record System: Technical Architecture. J. Am. Medical Informatics Assoc. William W. Simons, Kenneth D. Mandl, Isaac S. Kohane
2005	J	`jnl`	Position Paper: Wireless Technology Infrastructures for Authentication of Patients: PKI that Rings. J. Am. Medical Informatics Assoc. Ulrich Sax, Isaac S. Kohane, Kenneth D. Mandl
2005	J	`jnl`	Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements. BMC Bioinform. Scott L. Carter, Aron C. Eklund, Brigham H. Mecham, Isaac S. Kohane, Zoltan Szallasi
2005	J	`jnl`	Research Paper: Parents as Partners in Obtaining the Medication History. J. Am. Medical Informatics Assoc. Stephen C. Porter, Isaac S. Kohane, Donald A. Goldmann
2005	Misc	`conf`	Reverse Geocoding: Concerns about Patient Confidentiality in the Display of Geospatial Health Data. AMIA John S. Brownstein, Christopher A. Cassa, Isaac S. Kohane, Kenneth D. Mandl
2005	J	`jnl`	Systematic survey reveals general applicability of "guilt-by-association" within gene coexpression networks. BMC Bioinform. Cecily J. Wolfe, Isaac S. Kohane, Atul J. Butte
2005	J	`jnl`	The MAPPER database: a multi-genome catalog of putative transcription factor binding sites. Nucleic Acids Res. Voichita D. Marinescu, Isaac S. Kohane, Alberto Riva
2004	J	`jnl`	A SNP-centric database for the investigation of the human genome. BMC Bioinform. Alberto Riva, Isaac S. Kohane
2004	—	`conf`	A Submission Model for Use in the Indexing, Searching, and Retrieval of Distributed Pathology Case and Tissue Specimens. MedInfo Ahmad H. Namini, David A. Berkowicz, Isaac S. Kohane, Henry Chueh
2004	J	`jnl`	Application of Information Technology: The Asthma Kiosk: A Patient-centered Technology for Collaborative Decision Support in the Emergency Department. J. Am. Medical Informatics Assoc. Stephen C. Porter, Zhaohui Cai, William Gribbons, Donald A. Goldmann, Isaac S. Kohane
2004	J	`jnl`	Quantifying the relationship between co-expression, co-regulation and gene function. BMC Bioinform. Dominic J. Allocco, Isaac S. Kohane, Atul J. Butte
2004	J	`jnl`	White Paper: Training the Next Generation of Informaticians: The Impact of "BISTI" and Bioinformatics - A Report from the American College of Medical Informatics. J. Am. Medical Informatics Assoc. Charles P. Friedman, Russ B. Altman, Isaac S. Kohane, Kathleen A. McCormick, Perry L. Miller, Judy G. Ozbolt, Edward H. Shortliffe, Gary D. Stormo, M. Cleat Szczepaniak, David Tuck, Jeffrey J. Williamson
2003	J	`jnl`	Editorial: Methods in Functional Genomics. Mach. Learn. Paola Sebastiani, Isaac S. Kohane, Marco Ramoni
2003	Misc	`conf`	Human Genome Variation: Haplotypes, Linkage Disequilibrium, and Populations - Session Introduction. Pacific Symposium on Biocomputing Francisco M. de la Vega, Kenneth K. Kidd, Isaac S. Kohane
2003	Misc	`conf`	Localization and Characterization of Mouse-Human Alignments Within the Human Genome. Does Evolutionary Conservation Suggest Functional Importance? AMIA Sunil Saluja, Isaac S. Kohane
2003	J	`jnl`	PGAGENE: integrating quantitative gene-specific results from the NHLBI Programs for Genomic Applications. Bioinform. Kyungjoon Lee, Isaac S. Kohane, Atul J. Butte
2003	J	`jnl`	Reproducibility of gene expression across generations of Affymetrix microarrays. BMC Bioinform. Ashish Nimgaonkar, Despina Sanoudou, Atul J. Butte, Judith N. Haslett, Louis M. Kunkel, Alan H. Beggs, Isaac S. Kohane
2002	Misc	`conf`	Accessing genomic data through XML-based remote procedure calls. AMIA Alberto Riva, Isaac S. Kohane
2002	Misc	`conf`	An unsupervised self-optimizing gene clustering algorithm. AMIA Asher D. Schachter, Isaac S. Kohane
2002	J	`jnl`	Analysis of matched mRNA measurements from two different microarray technologies. Bioinform. Winston Patrick Kuo, Tor-Kristian Jenssen, Atul J. Butte, Lucila Ohno-Machado, Isaac S. Kohane
2002	J	`jnl`	Brief Review: The Contributions of Biomedical Informatics to the Fight Against Bioterrorism. J. Am. Medical Informatics Assoc. Isaac S. Kohane
2002	Misc	`conf`	CHIP TUNER: a web tool for evidence-based noise reduction in gene discovery. AMIA Christine L. Tsien, T. A. Libermann, X. Gu, A. Kho, Isaac S. Kohane
2002	J	`jnl`	Comparing expression profiles of genes with similar promoter regions. Bioinform. Peter J. Park, Atul J. Butte, Isaac S. Kohane
2002	Misc	`conf`	Computerized reminders to physicians in the emergency department: a web-based system to report late-arriving abnormal laboratory results. AMIA Zhaohui Cai, Isaac S. Kohane, Gary R. Fleisher, David S. Greenes
2002	Misc	`conf`	Human Genome Variation: Disease, Drug Response, and Clinical Phenotypes - Session Introduction. Pacific Symposium on Biocomputing Francisco M. de la Vega, Isaac S. Kohane, Julie A. Schneider, J. Claiborne Stephens
2002	A	`conf`	Linking gene expression data with patient survival times using partial least squares. ISMB Peter J. Park, Lu Tian, Isaac S. Kohane
2002	Misc	`conf`	Maximizing Data Portability in Patient-controlled Longitudinal Medical Records. AMIA Matvey B. Palchuk, Eric C. Pan, Isaac S. Kohane
2002	Misc	`conf`	Patient-controlled Pediatric Immunization Records. AMIA Eric C. Pan, Isaac S. Kohane, Kenneth D. Mandl
2002	J	`jnl`	SNPper: retrieval and analysis of human SNPs. Bioinform. Alberto Riva, Isaac S. Kohane
2002	J	`jnl`	Visualization and evaluation of clusters for exploratory analysis of gene expression data. J. Biomed. Informatics Ju-Han Kim, Isaac S. Kohane, Lucila Ohno-Machado
2001	Misc	`conf`	A web-based tool to retrieve human genome polymorphisms from public databases. AMIA Alberto Riva, Isaac S. Kohane
2001	Misc	`conf`	Building ICU artifact detection models with more data in less time. AMIA Christine L. Tsien, Isaac S. Kohane, Neil McIntosh
2001	J	`jnl`	Comparing the Similarity of Time-Series Gene Expression Using Signal Processing Metrics. J. Biomed. Informatics Atul J. Butte, Ling Bao, Ben Y. Reis, Timothy W. Watkins, Isaac S. Kohane
2001	Misc	`conf`	Determining Significant Fold Differences in Gene Expression Analysis. Pacific Symposium on Biocomputing Atul J. Butte, J. Ye, G. Niederfellner, K. Rett, H. U. Häring, M. F. White, Isaac S. Kohane
2001	B	`conf`	Evolution strategy applied to global optimization of clusters in gene expression data of DNA microarrays. CEC Kwonmoo Lee, Ju Han Kim, Tae Su Chung, Byoung-Sun Moon, Hoseung Lee, Isaac S. Kohane
2001	J	`jnl`	Extracting Knowledge from Dynamics in Gene Expression. J. Biomed. Informatics Ben Y. Reis, Atul J. Butte, Isaac S. Kohane
2001	Misc	`conf`	Human Genome Variation: Linking Genotypes to Clinical Phenotypes - Session Introduction. Pacific Symposium on Biocomputing Francisco M. de la Vega, Martin Kreitman, Isaac S. Kohane
2001	Misc	`conf`	On Reporting Fold Differences. Pacific Symposium on Biocomputing Christine L. Tsien, T. A. Libermann, X. Gu, Isaac S. Kohane
2001	—	`conf`	Optimal Data Entry by Patients: Effects of Interface Structure and Design. MedInfo Stephen C. Porter, Isaac S. Kohane
2001	J	`jnl`	Reply. J. Biomed. Informatics Ben Y. Reis, Atul J. Butte, Isaac S. Kohane
2001	J	`jnl`	The Personal Internetworked Notary and Guardian. Int. J. Medical Informatics Alberto Riva, Kenneth D. Mandl, Do Hoon Oh, Daniel J. Nigrin, Atul J. Butte, Peter Szolovits, Isaac S. Kohane
2001	Misc	`conf`	Unsupervised Learning from Complex Data: The Matrix Incision Tree Algorithm. Pacific Symposium on Biocomputing Ju-Han Kim, Lucila Ohno-Machado, Isaac S. Kohane
2000	Misc	`conf`	A Distributed, Secure File System For Personal Medical Records. AMIA Kenneth D. Mandl, Alberto Riva, Isaac S. Kohane
2000	J	`jnl`	Application of Information Technology: Temporal Expressiveness in Querying a Time-stamp - based Clinical Database. J. Am. Medical Informatics Assoc. Daniel J. Nigrin, Isaac S. Kohane
2000	J	`jnl`	Bioinformatics and Clinical Informatics: The Imperative to Collaborate. J. Am. Medical Informatics Assoc. Isaac S. Kohane
2000	Misc	`conf`	Collating of a Distributed XML-based Medical Records into a Relational Database. AMIA Do Hoon Oh, Alberto Riva, Kenneth D. Mandl, Isaac S. Kohane
2000	Misc	`conf`	Development of a Parent-completed Electronic Interview to Assess Dehydration. AMIA Stephen C. Porter, Gary R. Fleisher, Isaac S. Kohane, Kenneth D. Mandl
2000	Misc	`conf`	Enrolling patients into clinical trials faster using RealTime Recuiting. AMIA Atul J. Butte, David A. Weinstein, Isaac S. Kohane
2000	Misc	`conf`	First Steps Towards Implementing an International Training Program in Medical Informatics: The Brazil/USA Project. AMIA Lucila Ohno-Machado, Aziz A. Boxwala, Hamish Fraser, Robert A. Greenes, Isaac S. Kohane, Heimar F. Marin, Eduardo P. Marques, Eduardo Massad, Beatriz H. Rocha, Roberto A. Rocha, Laura M. Smeaton, Peter Szolovits
2000	Misc	`conf`	Glucoweb: a case study of secure, remote biomonitoring and communication. AMIA Daniel J. Nigrin, Isaac S. Kohane
2000	J	`jnl`	Implementation of an electronic medical record system in a pediatric psychopharmacology program. Int. J. Medical Informatics Joseph Gonzalez-Heydrich, David Ray DeMaso, Connie Irwin, Ronald J. Steingard, Isaac S. Kohane, William R. Beardslee
2000	J	`jnl`	Multiple signal integration by decision tree induction to detect artifacts in the neonatal intensive care unit. Artif. Intell. Medicine Christine L. Tsien, Isaac S. Kohane, Neil McIntosh
2000	Misc	`conf`	The new peer review. AMIA Isaac S. Kohane, Russ B. Altman
1999	Misc	`conf`	Artifact detection in cardiovascular time series monitoring data from preterm infants. AMIA Cungen Cao, Isaac S. Kohane, Neil McIntosh
1999	Misc	`conf`	Healthconnect: clinical grade patient-physician communication. AMIA Kenneth D. Mandl, Isaac S. Kohane
1999	Misc	`conf`	Scaling a data retrieval and mining application to the enterprise-wide level. AMIA Daniel J. Nigrin, Isaac S. Kohane
1999	Misc	`conf`	Unsupervised knowledge discovery in medical databases using relevance networks. AMIA Atul J. Butte, Isaac S. Kohane
1998	Misc	`conf`	An Alert System for ED Laboratory Test Results. AMIA Hongmei Dong, David S. Greenes, Gary R. Fleisher, Isaac S. Kohane
1998	Misc	`conf`	Data mining by clinicians. AMIA Daniel J. Nigrin, Isaac S. Kohane
1998	Misc	`conf`	Health information identification and de-identification toolkit. AMIA Isaac S. Kohane, Hongmei Dong, Peter Szolovits
1998	Misc	`conf`	HealthConnect: A Structured Communication System for Health Management. AMIA Karen L. Bradshaw, Kenneth D. Mandl, Isaac S. Kohane
1998	B	`conf`	LRTree: A Hybrid technique for Classifying Myocardial Infarction Data Containing Unknown Attribute Values. PAKDD Christine L. Tsien, Hamish S. F. Fraser, Isaac S. Kohane
1998	Misc	`conf`	Linking multiple heterogeneous data sources to practice guidelines. AMIA F. J. van Wingerde, Yao Sun, Oren Harary, Kenneth D. Mandl, Susanne Salem-Schatz, Charles J. Homer, Isaac S. Kohane
1998	Misc	`conf`	Methodology for Computer-Assisted Prediction of Growth Hormone Deficiency in Children. AMIA Christine L. Tsien, Daniel J. Nigrin, Isaac S. Kohane
1998	Misc	`conf`	ParentLink: A Web-Based Communications Tool for Parents and Pediatricians. AMIA Dilek A. Bishku, Charles J. Homer, Kenneth D. Mandl, Isaac S. Kohane
1998	Misc	`conf`	Parental Input into the Emergency Department Medical Record. AMIA Stephen C. Porter, Mary Silvia, Gary R. Fleisher, Isaac S. Kohane, Kenneth D. Mandl
1998	Misc	`conf`	Social equity and access to the World Wide Web and E-mail: implications for design and implementation of medical applications. AMIA Kenneth D. Mandl, S. B. Katz, Isaac S. Kohane
1997	Misc	`conf`	A Java-based multi-institutional medical information retrieval system. AMIA Kang Wang, F. J. van Wingerde, Karen L. Bradshaw, Peter Szolovits, Isaac S. Kohane
1997	Misc	`conf`	Confidentiality of Medical Records in the W3-EMRS Project. AMIA David M. Rind, Isaac S. Kohane, Peter Szolovits, Charles Safran, Henry C. Chueh, G. Octo Barnett
1996	J	`jnl`	Application of Technology: Building National Electronic Medical Record Systems via the World Wide Web. J. Am. Medical Informatics Assoc. Isaac S. Kohane, Philip Greenspun, James C. Fackler, Christopher Cimino, Peter Szolovits
1996	J	`jnl`	Managing temporal worlds for medical trend diagnosis. Artif. Intell. Medicine Ira J. Haimowitz, Isaac S. Kohane
1995	J	`jnl`	Clinical monitoring using regression-based trend templates. Artif. Intell. Medicine Ira J. Haimowitz, P. P. Le, Isaac S. Kohane
1995	J	`jnl`	Editorial. Artif. Intell. Medicine Isaac S. Kohane
1994	J	`jnl`	Policy Forum: Against Simple Universal Health-Care Identifiers. J. Am. Medical Informatics Assoc. Peter Szolovits, Isaac S. Kohane
1993	A*	`conf`	An Epistemology for Clinically Significant Trends. AAAI Ira J. Haimowitz, Isaac S. Kohane
1993	A*	`conf`	Automated Trend Detection with Alternate Temporal Hypotheses. IJCAI Ira J. Haimowitz, Isaac S. Kohane
1993	B	`conf`	Integration of intermittent clinical data with continuous data from bedside monitors. CBMS James C. Fackler, Isaac S. Kohane