Irit Hochberg

11 papers B 1Misc 2Journal 8
YearRankTypeTitle / Venue / Authors
2026 J jnl
J. Biomed. Informatics
Bruria Ben Shahar, Yuval Shahar, Shai Jaffe, Odeya Cohen, Erez Shalom, Maya Selivanova, Ephraim Rimon, Irit Hochberg, Ayelet Goldstein
2025 J jnl
CoRR
Yicong Wu, Ting Chen, Irit Hochberg, Zhoujian Sun, Ruth Edry, Zhengxing Huang, Mor Peleg
2023 J jnl
J. Biomed. Informatics
William Van Woensel, Samson W. Tu, Wojtek Michalowski, Syed Sibte Raza Abidi, Samina Abidi, José Ramón Alonso, Alessio Bottrighi, Marc Carrier, Ruth Edry, Irit Hochberg, Malvika Rao, Stephen P. Kingwell, Alexandra Kogan, Mar Marcos, Begoña Martínez-Salvador, Martin Michalowski, Luca Piovesan, David Riaño, Paolo Terenziani, Szymon Wilk, Mor Peleg
2023 J jnl
Int. J. Medical Informatics
Adam Reiter, Elad Yom-Tov, Irit Hochberg
2022 B conf
AIME
Alexandra Kogan, Mor Peleg, Samson W. Tu, Raviv Allon, Natanel Khaitov, Irit Hochberg
2021 J jnl
CoRR
Avner Hatsek, Irit Hochberg, Deeb Daoud Naccache, Aya Biderman, Yuval Shahar
2021 Misc conf
AMIA
Dympna O'Sullivan, William Van Woensel, Szymon Wilk, Samson W. Tu, Wojtek Michalowski, Samina Abidi, Marc Carrier, Ruth Edry, Irit Hochberg, Stephen P. Kingwell, Alexandra Kogan, Martin Michalowski, Hugh O'Sullivan, Mor Peleg
2020 Misc conf
AMIA
Alexandra Kogan, Mor Peleg, Samson W. Tu, Irit Hochberg, Natanel Khaitov, Raviv Allon
2020 J jnl
J. Biomed. Informatics
Alexandra Kogan, Mor Peleg, Samson W. Tu, Raviv Allon, Natanel Khaitov, Irit Hochberg
2016 J jnl
CoRR
Irit Hochberg, Guy Feraru, Mark Kozdoba, Shie Mannor, Moshe Tennenholtz, Elad Yom-Tov
2014 J jnl
BMC Bioinform.
Irit Hochberg, Quynh T. Tran, Ariel R. Barkan, Alan R. Saltiel, William F. Chandler, Dave Bridges
redb/utils/sort_files_by_type.py
← Index redb/utils/sort_files_by_type.py python
import os
import sys
from collections import defaultdict
import tempfile
from magika import Magika
import py7zr
import pyzipper
import shutil

"""
This script is used to sort files by their type. 
It reads all the files in the provided directory and splits them into different 
directories based on their type. Mainly, it classifies the files into the following types:
- PE Binaries
- Mach-O Binaries
- ELF Binaries
- APK 
- Other Files

It outputs the count of files for each file extension and file type.

Command line example:
nohup python3 sort_files_by_type.py /mnt/samples/consilience/malware/vx-bazaar-expanded/Bazaar.2020.12 \
    /mnt/samples/consilience/malware/_sorted_samples/vx-bazaar/2020/ > \
    /mnt/samples/consilience/malware/ops-logs/20241014-SORT_FILES-bazaar_2020.12.output.log 2>&1 &
"""


def process_zip_file(filepath):
    print(f"[INFO] - Processing zip file: {filepath}")
    with tempfile.TemporaryDirectory() as temp_dir:
        try:
            with pyzipper.AESZipFile(filepath) as zf:
                zf.pwd = b"infected"
                filename = zf.namelist()[0]
                zf.extractall(temp_dir)
                extracted_zip_path = os.path.join(temp_dir, filename)
                return process_binary_file(extracted_zip_path)
        except Exception as e:
            print(f"[ERR] - Error processing zip file {filepath}: {str(e)}")
            return None


def process_7z_file(filepath):
    print(f"[INFO] - Processing 7z file: {filepath}")
    with tempfile.TemporaryDirectory() as temp_dir:
        try:
            with py7zr.SevenZipFile(filepath, mode="r", password="infected") as z:
                z.extractall(path=temp_dir)
                for root, _, files in os.walk(temp_dir):
                    for file in files:
                        extracted_file_path = os.path.join(root, file)
                        return process_binary_file(extracted_file_path)
        except Exception as e:
            print(f"[ERR] - Error processing 7z file {filepath}: {str(e)}")
            return None


def process_binary_file(filepath):
    print(f"[INFO] - Processing binary file: {filepath}")
    try:
        with open(filepath, "rb") as f:
            data = f.read(512 * 1024)  # 512KB
        return Magika().identify_bytes(data).output.ct_label
    except Exception as e:
        print(f"[ERR] - Error processing binary file {filepath}: {str(e)}")
        return "ERROR"


def count_file_extensions(path, dest_dir):
    # A defaultdict to store file extension counts
    extension_count = defaultdict(int)
    filetype_count = defaultdict(int)
    tot_files = 0

    # Walk through the directory
    for root, dirs, files in os.walk(path):
        for file in files:
            if file.startswith("."):
                continue

            tot_files += 1
            # Split the file extension from the file name
            _, ext = os.path.splitext(file)
            ext = ext.lower()

            # Count the extensions
            extension_count[ext] += 1
            filepath = os.path.join(root, file)
            filetype = ""

            if ext == ".7z":
                filetype = process_7z_file(filepath)
            elif ext == ".zip":
                filetype = process_zip_file(filepath)
            else:
                filetype = process_binary_file(filepath)

            filetype_count[filetype] += 1

            if filetype == "pebin":
                dest = os.path.join(dest_dir, "pebin")
                os.makedirs(dest, exist_ok=True)
                shutil.copy2(filepath, os.path.join(dest, file))
            elif filetype == "macho":
                dest = os.path.join(dest_dir, "macho")
                os.makedirs(dest, exist_ok=True)
                shutil.copy2(filepath, os.path.join(dest, file))
            elif filetype == "elf":
                dest = os.path.join(dest_dir, "elf")
                os.makedirs(dest, exist_ok=True)
                shutil.copy2(filepath, os.path.join(dest, file))
            elif filetype == "apk":
                dest = os.path.join(dest_dir, "apk")
                os.makedirs(dest, exist_ok=True)
                shutil.copy2(filepath, os.path.join(dest, file))
            else:
                dest = os.path.join(dest_dir, "other")
                os.makedirs(dest, exist_ok=True)
                shutil.copy2(filepath, os.path.join(dest, file))
            print(f"[STATUS] - Progres: {tot_files}/{len(files)} files processed")

    # Print the results
    # print("- File Extension Statistics:")
    # for ext, count in extension_count.items():
    #     if ext:  # To exclude files with no extension
    #         print(f"\t{ext}: {count} files")

    # if "" in extension_count:
    #     print(f'\t{extension_count[""]} files with no extension')

    print(f"- Total Number of Files: {tot_files}")
    print("\n- File Type Statistics:")
    for filetype, count in sorted(filetype_count.items()):
        print(f"\t{filetype:<15}{count:>8}")


if __name__ == "__main__":
    # Check if the path was passed as a command-line argument
    if len(sys.argv) != 3:
        print("Usage: python3 script.py <input_path> <dest_dir>")
        sys.exit(1)

    # Get the path from the command-line arguments
    input_path = sys.argv[1]
    dest_dir = sys.argv[2]

    # Check if the provided path is valid
    if not os.path.isdir(input_path):
        print(f"The path '{input_path}' is not a valid directory.")
        sys.exit(1)

    # Call the function to count file extensions
    count_file_extensions(input_path, dest_dir)