Irina D. Pogozheva

13 papers Journal 13

Year	Rank	Type	Title / Venue / Authors
2023	J	`jnl`	Structural Modeling of Cytokine-Receptor-JAK2 Signaling Complexes Using AlphaFold Multimer. J. Chem. Inf. Model. Irina D. Pogozheva, Stanislav Cherepanov, Sang-Jun Park, Malini Raghavan, Wonpil Im, Andrei L. Lomize
2022	J	`jnl`	Comparative Molecular Dynamics Simulation Studies of Realistic Eukaryotic, Prokaryotic, and Archaeal Membranes. J. Chem. Inf. Model. Irina D. Pogozheva, Grant A. Armstrong, Lingyang Kong, Timothy J. Hartnagel, Carly A. Carpino, Stephen E. Gee, Danielle M. Picarello, Amanda S. Rubin, Jumin Lee, Soohyung Park, Andrei L. Lomize, Wonpil Im
2021	J	`jnl`	Thermodynamics-Based Molecular Modeling of α-Helices in Membranes and Micelles. J. Chem. Inf. Model. Andrei L. Lomize, Kevin Schnitzer, Spencer C. Todd, Irina D. Pogozheva
2019	J	`jnl`	PerMM: A Web Tool and Database for Analysis of Passive Membrane Permeability and Translocation Pathways of Bioactive Molecules. J. Chem. Inf. Model. Andrei L. Lomize, Jacob M. Hage, Kevin Schnitzer, Konstantin Golobokov, Mitchell B. Lafaive, Alexander C. Forsyth, Irina D. Pogozheva
2019	J	`jnl`	Physics-Based Method for Modeling Passive Membrane Permeability and Translocation Pathways of Bioactive Molecules. J. Chem. Inf. Model. Andrei L. Lomize, Irina D. Pogozheva
2018	J	`jnl`	Membranome 2.0: database for proteome-wide profiling of bitopic proteins and their dimers. Bioinform. Andrei L. Lomize, Jacob M. Hage, Irina D. Pogozheva
2017	J	`jnl`	Membranome: a database for proteome-wide analysis of single-pass membrane proteins. Nucleic Acids Res. Andrei L. Lomize, Mikhail A. Lomize, Shean R. Krolicki, Irina D. Pogozheva
2012	J	`jnl`	OPM database and PPM web server: resources for positioning of proteins in membranes. Nucleic Acids Res. Mikhail A. Lomize, Irina D. Pogozheva, Hyeon Joo, Henry I. Mosberg, Andrei L. Lomize
2011	J	`jnl`	Anisotropic Solvent Model of the Lipid Bilayer. 1. Parameterization of Long-Range Electrostatics and First Solvation Shell Effects. J. Chem. Inf. Model. Andrei L. Lomize, Irina D. Pogozheva, Henry I. Mosberg
2011	J	`jnl`	Anisotropic Solvent Model of the Lipid Bilayer. 2. Energetics of Insertion of Small Molecules, Peptides, and Proteins in Membranes. J. Chem. Inf. Model. Andrei L. Lomize, Irina D. Pogozheva, Henry I. Mosberg
2006	J	`jnl`	OPM: Orientations of Proteins in Membranes database. Bioinform. Mikhail A. Lomize, Andrei L. Lomize, Irina D. Pogozheva, Henry I. Mosberg
2003	J	`jnl`	Pharmacophore and receptor models for neurokinin receptors. J. Comput. Aided Mol. Des. Anders Poulsen, Berith Bjørnholm, Klaus Gundertofte, Irina D. Pogozheva, Tommy Liljefors
1999	J	`jnl`	Structural organization of G-protein-coupled receptors. J. Comput. Aided Mol. Des. Andrei L. Lomize, Irina D. Pogozheva, Henry I. Mosberg