Irene Otero-Muras

20 papers Journal 16Unranked 4
YearRankTypeTitle / Venue / Authors
2025 J jnl
A Computational Framework for Optimal and Model Predictive Control of Stochastic Gene Regulatory Networks.
IEEE Trans. Comput. Biol. Bioinform.
Hamza Faquir, Manuel Pájaro, Irene Otero-Muras
2025 — conf
An optimal-control framework for reaction diffusion systems with application to synthetic developmental biology.
CDC
Mohamed Amine Ouchdiri, Hamza Faquir, Saad Benjelloun, Mohamed Maghenem, Irene Otero-Muras, Adnane Saoud
2024 — conf
Analysis and Control of Gene Regulation Network Models Using Kinetic Semi-Discretization.
ECC
Mihály A. Vághy, Irene Otero-Muras, Gábor Szederkényi
2023 J jnl
Global Optimization Approach for Parameter Estimation in Stochastic Dynamic Models of Biosystems.
IEEE ACM Trans. Comput. Biol. Bioinform.
Carlos Sequeiros, Irene Otero-Muras, Carlos Vázquez, Julio R. Banga
2023 J jnl
IDESS: a toolbox for identification and automated design of stochastic gene circuits.
Bioinform.
Carlos Sequeiros, Manuel Pájaro, Carlos Vázquez, Julio R. Banga, Irene Otero-Muras
2022 J jnl
A numerical approach for detecting switch-like bistability in mass action chemical reaction networks with conservation laws.
BMC Bioinform.
Brandon Reyes, Irene Otero-Muras, Vladislav A. Petyuk
2022 — conf
Chemical Master Equation model to predict the COVID-19 epidemic spread.
XoveTIC
Manuel Pájaro, Antonio A. Alonso, Irene Otero-Muras
2020 J jnl
BioSwitch: a tool for the detection of bistability and multi-steady state behaviour in signalling and gene regulatory networks.
Bioinform.
Pencho Yordanov, Jörg Stelling, Irene Otero-Muras
2020 J jnl
CRNT4SBML: a Python package for the detection of bistability in biochemical reaction networks.
Bioinform.
Brandon Reyes, Irene Otero-Muras, Michael T. Shuen, Alexandre M. Tartakovsky, Vladislav A. Petyuk
2018 J jnl
Routes to Multiple Equilibria for Mass-Action Kinetic Systems.
Complex.
Antonio A. Alonso, Irene Otero-Muras, Manuel Pájaro
2018 J jnl
SELANSI: a toolbox for simulation of stochastic gene regulatory networks.
Bioinform.
Manuel Pájaro, Irene Otero-Muras, Carlos Vázquez, Antonio A. Alonso
2017 J jnl
Chemical Reaction Network Theory elucidates sources of multistability in interferon signaling.
PLoS Comput. Biol.
Irene Otero-Muras, Pencho Yordanov, Jörg Stelling
2016 J jnl
SYNBADm: a tool for optimization-based automated design of synthetic gene circuits.
Bioinform.
Irene Otero-Muras, David Henriques, Julio R. Banga
2014 J jnl
A method for inverse bifurcation of biochemical switches: inferring parameters from dose response curves.
BMC Syst. Biol.
Irene Otero-Muras, Pencho Yordanov, Jörg Stelling
2014 J jnl
Multicriteria global optimization for biocircuit design.
BMC Syst. Biol.
Irene Otero-Muras, Julio R. Banga
2014 — conf
Optimization Based Design of Synthetic Oscillators from Standard Biological Parts.
CMSB
Irene Otero-Muras, Julio R. Banga
2010 J jnl
Dynamic multi-compartmental modelling of metal bioaccumulation in fish: Identifiability implications.
Environ. Model. Softw.
Irene Otero-Muras, Amaya Franco-Uría, Antonio A. Alonso, Eva Balsa-Canto
2008 J jnl
Dynamic analysis and control of biochemical reaction networks.
Math. Comput. Simul.
Irene Otero-Muras, Gábor Szederkényi, Katalin M. Hangos, Antonio A. Alonso
2008 J jnl
Local dissipative Hamiltonian description of reversible reaction networks.
Syst. Control. Lett.
Irene Otero-Muras, Gábor Szederkényi, Antonio A. Alonso, Katalin M. Hangos
2007 J jnl
A systematic approach to plant-wide control based on thermodynamics.
Comput. Chem. Eng.
Luis T. Antelo, Irene Otero-Muras, Julio R. Banga, Antonio A. Alonso