Ipek Oguz - RankMe

138 papers A* 1A 1B 24Journal 60Unranked 45

Year	Rank	Type	Title / Venue / Authors
2026	—	`ed.`	Information Processing in Medical Imaging - 29th International Conference, IPMI 2025, Kos, Greece, May 25-30, 2025, Proceedings, Part I IPMI (1) Ipek Oguz, Shaoting Zhang, Dimitris N. Metaxas
2026	—	`ed.`	Information Processing in Medical Imaging - 29th International Conference, IPMI 2025, Kos, Greece, May 25-30, 2025, Proceedings, Part II IPMI (2) Ipek Oguz, Shaoting Zhang, Dimitris N. Metaxas
2026	J	`jnl`	IntraStyler: Exemplar-based Style Synthesis for Cross-modality Domain Adaptation. CoRR Han Liu, Yubo Fan, Hao Li, Dewei Hu, Daniel Moyer, Zhoubing Xu, Benoit M. Dawant, Ipek Oguz
2026	J	`jnl`	VAMOS-OCTA: Vessel-Aware Multi-Axis Orthogonal Supervision for Inpainting Motion-Corrupted OCT Angiography Volumes. CoRR Nick DiSanto, Ehsan Khodapanah Aghdam, Han Liu, Jacob Watson, Yuankai K. Tao, Hao Li, Ipek Oguz
2025	J	`jnl`	A Supervised Autonomous Resection and Retraction Framework for Transurethral Enucleation of the Prostatic Median Lobe. CoRR Mariana E. Smith, Tanner Watts, Susheela Sharma Stern, Brendan Burkhart, Hao Li, Alejandro O. Chara, Nithesh Kumar, James M. Ferguson, Ayberk Acar, Jesse F. d'Almeida, Lauren Branscombe, Lauren M. Shepard, Ahmed Ghazi, Ipek Oguz, Jie Ying Wu, Robert J. Webster III, Axel Krieger, Alan Kuntz
2025	J	`jnl`	DEMIST: Decoupled Multi-stream latent diffusion for Quantitative Myelin Map Synthesis. CoRR Jiacheng Wang, Hao Li, Xing Yao, Ahmad Toubasi, Taegan Vinarsky, Caroline Gheen, Joy Derwenskus, Chaoyang Jin, Richard Dortch, Junzhong Xu, Francesca Bagnato, Ipek Oguz
2025	J	`jnl`	Endo-SemiS: Towards Robust Semi-Supervised Image Segmentation for Endoscopic Video. CoRR Hao Li, Daiwei Lu, Xing Yao, Nicholas L. Kavoussi, Ipek Oguz
2025	J	`jnl`	EndoStreamDepth: Temporally Consistent Monocular Depth Estimation for Endoscopic Video Streams. CoRR Hao Li, Daiwei Lu, Jiacheng Wang, Robert J. Webster III, Ipek Oguz
2025	A	`conf`	From Monocular Vision to Autonomous Action: Guiding Tumor Resection via 3D Reconstruction. IROS Ayberk Acar, Mariana E. Smith, Lidia Al-Zogbi, Tanner Watts, Fangjie Li, Hao Li, Nural Yilmaz, Paul Maria Scheikl, Jesse F. d'Almeida, Susheela Sharma, Lauren Branscombe, Tayfun Efe Ertop, Robert J. Webster III, Ipek Oguz, Alan Kuntz, Axel Krieger, Jie Ying Wu
2025	J	`jnl`	From Monocular Vision to Autonomous Action: Guiding Tumor Resection via 3D Reconstruction. CoRR Ayberk Acar, Mariana E. Smith, Lidia Al-Zogbi, Tanner Watts, Fangjie Li, Hao Li, Nural Yilmaz, Paul Maria Scheikl, Jesse F. d'Almeida, Susheela Sharma, Lauren Branscombe, Tayfun Efe Ertop, Robert J. Webster III, Ipek Oguz, Alan Kuntz, Axel Krieger, Jie Ying Wu
2025	B	`conf`	ISL: Monitoring Image Segmentation Logic in Medical Imaging Analysis. RV Ziyan An, Daniel Moyer, Ipek Oguz, Taylor T. Johnson, Meiyi Ma
2025	J	`jnl`	Monocular absolute depth estimation from endoscopy via domain-invariant feature learning and latent consistency. CoRR Hao Li, Daiwei Lu, Jesse F. d'Almeida, Dilara Isik, Ehsan Khodapanah Aghdam, Nick DiSanto, Ayberk Acar, Susheela Sharma, Jie Ying Wu, Robert J. Webster III, Ipek Oguz
2025	J	`jnl`	Probabilistic Robustness Analysis in High Dimensional Space: Application to Semantic Segmentation Network. CoRR Navid Hashemi, Samuel Sasaki, Diego Manzanas Lopez, Ipek Oguz, Meiyi Ma, Taylor T. Johnson
2025	J	`jnl`	ProbeMDE: Uncertainty-Guided Active Proprioception for Monocular Depth Estimation in Surgical Robotics. CoRR Britton Jordan, Jordan Thompson, Jesse F. d'Almeida, Hao Li, Nithesh Kumar, Susheela Sharma Stern, Ipek Oguz, Robert J. Webster III, Daniel S. Brown, Alan Kuntz, James M. Ferguson
2025	J	`jnl`	Semantic 3D Reconstructions with SLAM for Central Airway Obstruction. CoRR Ayberk Acar, Fangjie Li, Hao Li, Lidia Al-Zogbi, Kanyifeechukwu Jane Oguine, Susheela Sharma, Jesse F. d'Almeida, Robert J. Webster III, Ipek Oguz, Jie Ying Wu
2025	—	`conf`	SynStitch: A Self-Supervised Learning Network for Ultrasound Image Stitching Using Synthetic Training Pairs and Indirect Supervision. ISBI Xing Yao, Runxuan Yu, Dewei Hu, Hao Yang, Ange Lou, Jiacheng Wang, Daiwei Lu, Gabriel Arenas, Baris U. Oguz, Alison M. Pouch, Nadav Schwartz, Brett C. Byram, Ipek Oguz
2025	J	`jnl`	crossMoDA Challenge: Evolution of Cross-Modality Domain Adaptation Techniques for Vestibular Schwannoma and Cochlea Segmentation from 2021 to 2023. CoRR Navodini Wijethilake, Reuben Dorent, Marina Ivory, Aaron Kujawa, Stefan Cornelissen, Patrick Langenhuizen, Mohamed Okasha, Anna Oviedova, Hexin Dong, Bogyeong Kang, Guillaume Sallé, Luyi Han, Ziyuan Zhao, Han Liu, Tao Yang, Shahad Hardan, Hussain Alasmawi, Santosh Sanjeev, Yuzhou Zhuang, Satoshi Kondo, Maria G. Baldeon Calisto, Shaikh Muhammad Uzair Noman, Cancan Chen, Ipek Oguz, Rongguo Zhang, Mina Rezaei, Susana K. Lai-Yuen, Satoshi Kasai, Chih-Cheng Hung, Mohammad Yaqub, Lisheng Wang, Benoit M. Dawant, Cuntai Guan, Ritse Mann, Vincent Jaouen, Ji-Wung Han, Li Zhang, Jonathan Shapey, Tom Vercauteren
2024	—	`conf`	AdaptDiff: Cross-Modality Domain Adaptation via Weak Conditional Semantic Diffusion for Retinal Vessel Segmentation. SASHIMI@MICCAI Dewei Hu, Hao Li, Han Liu, Jiacheng Wang, Xing Yao, Daiwei Lu, Ipek Oguz
2024	J	`jnl`	AdaptDiff: Cross-Modality Domain Adaptation via Weak Conditional Semantic Diffusion for Retinal Vessel Segmentation. CoRR Dewei Hu, Hao Li, Han Liu, Jiacheng Wang, Xing Yao, Daiwei Lu, Ipek Oguz
2024	—	`conf`	Assessing Test-Time Variability for Interactive 3D Medical Image Segmentation with Diverse Point Prompts. ISBI Hao Li, Han Liu, Dewei Hu, Jiacheng Wang, Ipek Oguz
2024	J	`jnl`	COSST: Multi-Organ Segmentation With Partially Labeled Datasets Using Comprehensive Supervisions and Self-Training. IEEE Trans. Medical Imaging Han Liu, Zhoubing Xu, Riqiang Gao, Hao Li, Jianing Wang, Guillaume Chabin, Ipek Oguz, Sasa Grbic
2024	J	`jnl`	Deep Learning-based Unsupervised Domain Adaptation via a Unified Model for Prostate Lesion Detection Using Multisite Bi-parametric MRI Datasets. CoRR Hao Li, Han Liu, Heinrich von Busch, Robert Grimm, Henkjan Huisman, Angela Tong, David J. Winkel, Tobias Penzkofer, Ivan Shabunin, Moon Hyung Choi, Qingsong Yang, Dieter Szolar, Steven Shea, Fergus Coakley, Mukesh Harisinghani, Ipek Oguz, Dorin Comaniciu, Ali Kamen, Bin Lou
2024	J	`jnl`	Domain generalization for retinal vessel segmentation via Hessian-based vector field. Medical Image Anal. Dewei Hu, Hao Li, Han Liu, Ipek Oguz
2024	—	`conf`	Interactive Segmentation Model for Placenta Segmentation from 3D Ultrasound Images. ASMUS@MICCAI Hao Li, Baris U. Oguz, Gabriel Arenas, Xing Yao, Jiacheng Wang, Alison M. Pouch, Brett C. Byram, Nadav Schwartz, Ipek Oguz
2024	J	`jnl`	Interactive Segmentation Model for Placenta Segmentation from 3D Ultrasound images. CoRR Hao Li, Baris U. Oguz, Gabriel Arenas, Xing Yao, Jiacheng Wang, Alison M. Pouch, Brett C. Byram, Nadav Schwartz, Ipek Oguz
2024	—	`conf`	Novel OCT Mosaicking Pipeline with Feature-And Pixel-Based Registration. ISBI Jiacheng Wang, Hao Li, Dewei Hu, Yuankai K. Tao, Ipek Oguz
2024	J	`jnl`	PRISM Lite: A lightweight model for interactive 3D placenta segmentation in ultrasound. CoRR Hao Li, Baris U. Oguz, Gabriel Arenas, Xing Yao, Jiacheng Wang, Alison M. Pouch, Brett C. Byram, Nadav Schwartz, Ipek Oguz
2024	—	`conf`	PRISM: A Promptable and Robust Interactive Segmentation Model with Visual Prompts. MICCAI (3) Hao Li, Han Liu, Dewei Hu, Jiacheng Wang, Ipek Oguz
2024	J	`jnl`	PRISM: A Promptable and Robust Interactive Segmentation Model with Visual Prompts. CoRR Hao Li, Han Liu, Dewei Hu, Jiacheng Wang, Ipek Oguz
2024	J	`jnl`	Predicting fluorescent labels in label-free microscopy images with pix2pix and adaptive loss in Light My Cells challenge. CoRR Han Liu, Hao Li, Jiacheng Wang, Yubo Fan, Zhoubing Xu, Ipek Oguz
2024	—	`conf`	Promise: Prompt-Driven 3D Medical Image Segmentation Using Pretrained Image Foundation Models. ISBI Hao Li, Han Liu, Dewei Hu, Jiacheng Wang, Ipek Oguz
2024	—	`conf`	Retinal IPA: Iterative KeyPoints Alignment for Multimodal Retinal Imaging. MOVI@MICCAI Jiacheng Wang, Hao Li, Dewei Hu, Rui Xu, Xing Yao, Yuankai K. Tao, Ipek Oguz
2024	J	`jnl`	Retinal IPA: Iterative KeyPoints Alignment for Multimodal Retinal Imaging. CoRR Jiacheng Wang, Hao Li, Dewei Hu, Rui Xu, Xing Yao, Yuankai K. Tao, Ipek Oguz
2024	J	`jnl`	SynStitch: a Self-Supervised Learning Network for Ultrasound Image Stitching Using Synthetic Training Pairs and Indirect Supervision. CoRR Xing Yao, Runxuan Yu, Dewei Hu, Hao Yang, Ange Lou, Jiacheng Wang, Daiwei Lu, Gabriel Arenas, Baris U. Oguz, Alison M. Pouch, Nadav Schwartz, Brett C. Byram, Ipek Oguz
2023	J	`jnl`	Assessing Test-time Variability for Interactive 3D Medical Image Segmentation with Diverse Point Prompts. CoRR Hao Li, Han Liu, Dewei Hu, Jiacheng Wang, Ipek Oguz
2023	J	`jnl`	CATS v2: Hybrid encoders for robust medical segmentation. CoRR Hao Li, Han Liu, Dewei Hu, Xing Yao, Jiacheng Wang, Ipek Oguz
2023	—	`conf`	COLosSAL: A Benchmark for Cold-Start Active Learning for 3D Medical Image Segmentation. MICCAI (2) Han Liu, Hao Li, Xing Yao, Yubo Fan, Dewei Hu, Benoit M. Dawant, Vishwesh Nath, Zhoubing Xu, Ipek Oguz
2023	J	`jnl`	COLosSAL: A Benchmark for Cold-start Active Learning for 3D Medical Image Segmentation. CoRR Han Liu, Hao Li, Xing Yao, Yubo Fan, Dewei Hu, Benoit M. Dawant, Vishwesh Nath, Zhoubing Xu, Ipek Oguz
2023	J	`jnl`	COSST: Multi-organ Segmentation with Partially Labeled Datasets Using Comprehensive Supervisions and Self-training. CoRR Han Liu, Zhoubing Xu, Riqiang Gao, Hao Li, Jianing Wang, Guillaume Chabin, Ipek Oguz, Sasa Grbic
2023	J	`jnl`	CrossMoDA 2021 challenge: Benchmark of cross-modality domain adaptation techniques for vestibular schwannoma and cochlea segmentation. Medical Image Anal. Reuben Dorent, Aaron Kujawa, Marina Ivory, Spyridon Bakas, Nicola Rieke, Samuel Joutard, Ben Glocker, M. Jorge Cardoso, Marc Modat, Kayhan Batmanghelich, Arseniy Belkov, Maria G. Baldeon Calisto, Jae Won Choi, Benoit M. Dawant, Hexin Dong, Sergio Escalera, Yubo Fan, Lasse Hansen, Mattias P. Heinrich, Smriti Joshi, Victoriya Kashtanova, Hyeongyu Kim, Satoshi Kondo, Christian N. Kruse, Susana K. Lai-Yuen, Hao Li, Han Liu, Buntheng Ly, Ipek Oguz, Hyungseob Shin, Boris Shirokikh, Zixian Su, Guotai Wang, Jianghao Wu, Yanwu Xu, Kai Yao, Li Zhang, Sébastien Ourselin, Jonathan Shapey, Tom Vercauteren
2023	J	`jnl`	Deep Angiogram: Trivializing Retinal Vessel Segmentation. CoRR Dewei Hu, Xing Yao, Jiacheng Wang, Yuankai K. Tao, Ipek Oguz
2023	B	`conf`	Deep angiogram: trivializing retinal vessel segmentation. Image Processing Dewei Hu, Xing Yao, Jiacheng Wang, Yuankai K. Tao, Ipek Oguz
2023	B	`conf`	Domain generalization for robust MS lesion segmentation. Image Processing Huahong Zhang, Hao Li, Kathleen E. Larson, Kilian Hett, Ipek Oguz
2023	J	`jnl`	False Negative/Positive Control for SAM on Noisy Medical Images. CoRR Xing Yao, Han Liu, Dewei Hu, Daiwei Lu, Ange Lou, Hao Li, Ruining Deng, Gabriel Arenas, Baris U. Oguz, Nadav Schwartz, Brett C. Byram, Ipek Oguz
2023	J	`jnl`	Hierarchical particle optimization for cortical shape correspondence in temporal lobe resection. Comput. Biol. Medicine Yue Liu, Shunxing Bao, Dario J. Englot, Victoria L. Morgan, Warren D. Taylor, Ying Wei, Ipek Oguz, Bennett A. Landman, Ilwoo Lyu
2023	—	`conf`	Learning Site-Specific Styles for Multi-institutional Unsupervised Cross-Modality Domain Adaptation. BraTS/CrossMoDA@MICCAI Han Liu, Yubo Fan, Zhoubing Xu, Benoit M. Dawant, Ipek Oguz
2023	J	`jnl`	Learning Site-specific Styles for Multi-institutional Unsupervised Cross-modality Domain Adaptation. CoRR Han Liu, Yubo Fan, Zhoubing Xu, Benoit M. Dawant, Ipek Oguz
2023	—	`conf`	MAP: Domain Generalization via Meta-Learning on Anatomy-Consistent Pseudo-Modalities. ISIC/Care-AI/MedAGI/DeCaF@MICCAI Dewei Hu, Hao Li, Han Liu, Xing Yao, Jiacheng Wang, Ipek Oguz
2023	J	`jnl`	MAP: Domain Generalization via Meta-Learning on Anatomy-Consistent Pseudo-Modalities. CoRR Dewei Hu, Hao Li, Han Liu, Xing Yao, Jiacheng Wang, Ipek Oguz
2023	—	`ed.`	Medical Imaging with Deep Learning, MIDL 2023, 10-12 July 2023, Nashville, TN, USA. MIDL Ipek Oguz, Jack H. Noble, Xiaoxiao Li, Martin Styner, Christian Baumgartner, Mirabela Rusu, Tobias Heimann, Despina Kontos, Bennett A. Landman, Benoit M. Dawant
2023	J	`jnl`	Novel OCT mosaicking pipeline with Feature- and Pixel-based registration. CoRR Jiacheng Wang, Hao Li, Dewei Hu, Yuankai K. Tao, Ipek Oguz
2023	B	`conf`	Novel application of the attention mechanism on medical image harmonization. Image Processing Xing Yao, Ange Lou, Hao Li, Dewei Hu, Daiwei Lu, Han Liu, Jiacheng Wang, Zachary A. Stoebner, Hans J. Johnson, Jeffrey D. Long, Jane S. Paulsen, Ipek Oguz
2023	J	`jnl`	Promise: Prompt-driven 3D Medical Image Segmentation Using Pretrained Image Foundation Models. CoRR Hao Li, Han Liu, Dewei Hu, Jiacheng Wang, Ipek Oguz
2023	B	`conf`	SSL2: self-supervised learning meets semi-supervised learning: multiple sclerosis segmentation in 7T-MRI from large-scale 3T-MRI. Image Processing Jiacheng Wang, Hao Li, Han Liu, Dewei Hu, Daiwei Lu, Keejin Yoon, Kelsey Barter, Francesca Bagnato, Ipek Oguz
2023	J	`jnl`	SSL^2: Self-Supervised Learning meets Semi-Supervised Learning: Multiple Sclerosis Segmentation in 7T-MRI from large-scale 3T-MRI. CoRR Jiacheng Wang, Hao Li, Han Liu, Dewei Hu, Daiwei Lu, Keejin Yoon, Kelsey Barter, Francesca Bagnato, Ipek Oguz
2023	—	`conf`	Self-Supervised CSF Inpainting for Improved Accuracy Validation of Cortical Surface Analyses. MIDL Jiacheng Wang, Kathleen E. Larson, Ipek Oguz
2023	J	`jnl`	Self-Supervised CSF Inpainting with Synthetic Atrophy for Improved Accuracy Validation of Cortical Surface Analyses. CoRR Jiacheng Wang, Kathleen E. Larson, Ipek Oguz
2023	J	`jnl`	VesselMorph: Domain-Generalized Retinal Vessel Segmentation via Shape-Aware Representation. CoRR Dewei Hu, Hao Li, Han Liu, Xing Yao, Jiacheng Wang, Ipek Oguz
2022	—	`conf`	Acoustic neuroma segmentation using ensembled convolutional neural networks. Biomedical Applications in Molecular, Structural, and Functional Imaging Qibang Zhu, Hao Li, Nathan D. Cass, Nathan R. Lindquist, Kareem O. Tawfik, Ipek Oguz
2022	—	`conf`	Cats: Complementary CNN and Transformer Encoders for Segmentation. ISBI Hao Li, Dewei Hu, Han Liu, Jiacheng Wang, Ipek Oguz
2022	J	`jnl`	Cats: Complementary CNN and Transformer Encoders for Segmentation. CoRR Hao Li, Dewei Hu, Han Liu, Jiacheng Wang, Ipek Oguz
2022	J	`jnl`	CrossMoDA 2021 challenge: Benchmark of Cross-Modality Domain Adaptation techniques for Vestibular Schwnannoma and Cochlea Segmentation. CoRR Reuben Dorent, Aaron Kujawa, Marina Ivory, Spyridon Bakas, Nicola Rieke, Samuel Joutard, Ben Glocker, Jorge Cardoso, Marc Modat, Kayhan Batmanghelich, Arseniy Belkov, Maria G. Baldeon Calisto, Jae Won Choi, Benoit M. Dawant, Hexin Dong, Sergio Escalera, Yubo Fan, Lasse Hansen, Mattias P. Heinrich, Smriti Joshi, Victoriya Kashtanova, Hyeongyu Kim, Satoshi Kondo, Christian N. Kruse, Susana K. Lai-Yuen, Hao Li, Han Liu, Buntheng Ly, Ipek Oguz, Hyungseob Shin, Boris Shirokikh, Zixian Su, Guotai Wang, Jianghao Wu, Yanwu Xu, Kai Yao, Li Zhang, Sébastien Ourselin, Jonathan Shapey, Tom Vercauteren
2022	—	`conf`	Domain Generalization for Retinal Vessel Segmentation with Vector Field Transformer. MIDL Dewei Hu, Hao Li, Han Liu, Ipek Oguz
2022	—	`conf`	Enhancing Data Diversity for Self-training Based Unsupervised Cross-Modality Vestibular Schwannoma and Cochlea Segmentation. BrainLes@MICCAI (2) Han Liu, Yubo Fan, Ipek Oguz, Benoit M. Dawant
2022	B	`conf`	Human brain extraction with deep learning. Image Processing Hao Li, Qibang Zhu, Dewei Hu, Manasvi R. Gunnala, Hans J. Johnson, Omar Sherbini, Francesco Gavazzi, Russell D'Aiello, Adeline Vanderver, Jeffrey D. Long, Jane S. Paulsen, Ipek Oguz
2022	—	`conf`	ModDrop++: A Dynamic Filter Network with Intra-subject Co-training for Multiple Sclerosis Lesion Segmentation with Missing Modalities. MICCAI (5) Han Liu, Yubo Fan, Hao Li, Jiacheng Wang, Dewei Hu, Can Cui, Ho Hin Lee, Huahong Zhang, Ipek Oguz
2022	J	`jnl`	ModDrop++: A Dynamic Filter Network with Intra-subject Co-training for Multiple Sclerosis Lesion Segmentation with Missing Modalities. CoRR Han Liu, Yubo Fan, Hao Li, Jiacheng Wang, Dewei Hu, Can Cui, Ho Hin Lee, Ipek Oguz
2022	B	`conf`	Segmentation of kidney stones in endoscopic video feeds. Image Processing Zachary A. Stoebner, Daiwei Lu, Seok Hee Hong, Nicholas L. Kavoussi, Ipek Oguz
2022	J	`jnl`	Segmentation of kidney stones in endoscopic video feeds. CoRR Zachary A. Stoebner, Daiwei Lu, Seok Hee Hong, Nicholas L. Kavoussi, Ipek Oguz
2022	—	`conf`	Self-supervised Test-Time Adaptation for Medical Image Segmentation. MLCN@MICCAI Hao Li, Han Liu, Dewei Hu, Jiacheng Wang, Hans J. Johnson, Omar Sherbini, Francesco Gavazzi, Russell D'Aiello, Adeline Vanderver, Jeffrey D. Long, Jane S. Paulsen, Ipek Oguz
2022	J	`jnl`	Unsupervised Denoising of Retinal OCT with Diffusion Probabilistic Model. CoRR Dewei Hu, Yuankai K. Tao, Ipek Oguz
2022	B	`conf`	Unsupervised denoising of retinal OCT with diffusion probabilistic model. Image Processing Dewei Hu, Yuankai K. Tao, Ipek Oguz
2021	B	`conf`	Establishing surface correspondence for post-surgical cortical thickness changes in temporal lobe epilepsy. Image Processing Yue Liu, Dario J. Englot, Victoria L. Morgan, Warren D. Taylor, Ying Wei, Ipek Oguz, Bennett A. Landman, Ilwoo Lyu
2021	—	`conf`	LIFE: A Generalizable Autodidactic Pipeline for 3D OCT-A Vessel Segmentation. MICCAI (1) Dewei Hu, Can Cui, Hao Li, Kathleen E. Larson, Yuankai K. Tao, Ipek Oguz
2021	J	`jnl`	LIFE: A Generalizable Autodidactic Pipeline for 3D OCT-A Vessel Segmentation. CoRR Dewei Hu, Can Cui, Hao Li, Kathleen E. Larson, Yuankai K. Tao, Ipek Oguz
2021	B	`conf`	Longitudinal subcortical segmentation with deep learning. Image Processing Hao Li, Huahong Zhang, Hans J. Johnson, Jeffrey D. Long, Jane S. Paulsen, Ipek Oguz
2021	B	`conf`	MRI subcortical segmentation in neurodegeneration with cascaded 3D CNNs. Image Processing Hao Li, Huahong Zhang, Hans J. Johnson, Jeffrey D. Long, Jane S. Paulsen, Ipek Oguz
2021	J	`jnl`	Multi-scale graph-based grading for Alzheimer's disease prediction. Medical Image Anal. Kilian Hett, Vinh-Thong Ta, Ipek Oguz, José V. Manjón, Pierrick Coupé
2021	J	`jnl`	Retinal OCT Denoising with Pseudo-Multimodal Fusion Network. CoRR Dewei Hu, Joseph D. Malone, Yigit Atay, Yuankai K. Tao, Ipek Oguz
2021	B	`conf`	Synthetic atrophy for longitudinal surface-based cortical thickness measurement. Image Processing Kathleen E. Larson, Ipek Oguz
2021	J	`jnl`	Unsupervised Cross-Modality Domain Adaptation for Segmenting Vestibular Schwannoma and Cochlea with Data Augmentation and Model Ensemble. CoRR Hao Li, Dewei Hu, Qibang Zhu, Kathleen E. Larson, Huahong Zhang, Ipek Oguz
2021	—	`conf`	Unsupervised Cross-modality Domain Adaptation for Segmenting Vestibular Schwannoma and Cochlea with Data Augmentation and Model Ensemble. BrainLes@MICCAI (2) Hao Li, Dewei Hu, Qibang Zhu, Kathleen E. Larson, Huahong Zhang, Ipek Oguz
2020	—	`conf`	Automated Meshing of Anatomical Shapes for Deformable Medial Modeling: Application to the Placenta in 3D Ultrasound. ISBI Alison M. Pouch, Paul A. Yushkevich, Abdullah H. Aly, Alexander H. F. Woltersom, Edidiong Okon, Ahmed H. Aly, Natalie Yushkevich, Shobhana Parameshwaran, Jiancong Wang, Baris U. Oguz, James C. Gee, Ipek Oguz, Nadav Schwartz
2020	—	`conf`	Generalizing MRI Subcortical Segmentation to Neurodegeneration. MLCN/RNO-AI@MICCAI Hao Li, Huahong Zhang, Dewei Hu, Hans J. Johnson, Jeffrey D. Long, Jane S. Paulsen, Ipek Oguz
2020	B	`conf`	Joint intensity fusion with normalized cross-correlation metric for cross-modality MRI synthesis (Conference Presentation). Image Processing Kathryn Ufford, Simon N. Vandekar, Ipek Oguz
2020	—	`conf`	Multiple Sclerosis Lesion Segmentation - A Survey of Supervised CNN-Based Methods. BrainLes@MICCAI (1) Huahong Zhang, Ipek Oguz
2020	J	`jnl`	Multiple Sclerosis Lesion Segmentation - A Survey of Supervised CNN-Based Methods. CoRR Huahong Zhang, Ipek Oguz
2020	—	`conf`	Patch-Based Abnormality Maps for Improved Deep Learning-Based Classification of Huntington's Disease. MICCAI (7) Kilian Hett, Rémi Giraud, Hans J. Johnson, Jane S. Paulsen, Jeffrey D. Long, Ipek Oguz
2020	—	`conf`	Retinal OCT Denoising with Pseudo-Multimodal Fusion Network. OMIA@MICCAI Dewei Hu, Joseph D. Malone, Yigit Atay, Yuankai K. Tao, Ipek Oguz
2020	—	`conf`	Robust Multiple Sclerosis Lesion Inpainting with Edge Prior. MLMI@MICCAI Huahong Zhang, Rohit Bakshi, Francesca Bagnato, Ipek Oguz
2020	B	`conf`	Self-fusion for OCT noise reduction. Image Processing Ipek Oguz, Joseph D. Malone, Yigit Atay, Yuankai K. Tao
2020	—	`conf`	Tensor-Based Grading: A Novel Patch-Based Grading Approach for the Analysis Of Deformation Fields in Huntington's Disease. ISBI Kilian Hett, Hans J. Johnson, Pierrick Coupé, Jane S. Paulsen, Jeffrey D. Long, Ipek Oguz
2020	J	`jnl`	Tensor-Based Grading: A Novel Patch-Based Grading Approach for the Analysis of Deformation Fields in Huntington's Disease. CoRR Kilian Hett, Hans J. Johnson, Pierrick Coupé, Jane S. Paulsen, Jeffrey D. Long, Ipek Oguz
2019	J	`jnl`	Automated Segmentation of Knee MRI Using Hierarchical Classifiers and Just Enough Interaction Based Learning: Data from Osteoarthritis Initiative. CoRR Satyananda Kashyap, Ipek Oguz, Honghai Zhang, Milan Sonka
2019	—	`ed.`	International Conference on Medical Imaging with Deep Learning, MIDL 2019, 8-10 July 2019, London, United Kingdom MIDL M. Jorge Cardoso, Aasa Feragen, Ben Glocker, Ender Konukoglu, Ipek Oguz, Gozde B. Unal, Tom Vercauteren
2019	J	`jnl`	Medical Imaging with Deep Learning: MIDL 2019 - Extended Abstract Track. CoRR M. Jorge Cardoso, Aasa Feragen, Ben Glocker, Ender Konukoglu, Ipek Oguz, Gozde B. Unal, Tom Vercauteren
2019	—	`conf`	Multiple Sclerosis Lesion Segmentation with Tiramisu and 2.5D Stacked Slices. MICCAI (3) Huahong Zhang, Alessandra M. Valcarcel, Rohit Bakshi, Renxin Chu, Francesca Bagnato, Russell T. Shinohara, Kilian Hett, Ipek Oguz
2019	J	`jnl`	User-Guided Segmentation of Multi-modality Medical Imaging Datasets with ITK-SNAP. Neuroinformatics Paul A. Yushkevich, Artem Pashchinskiy, Ipek Oguz, Suyash Mohan, J. Eric Schmitt, Joel M. Stein, Dzenan Zukic, Jared Vicory, Matthew McCormick, Natalie Yushkevich, Nadav Schwartz, Yang Gao, Guido Gerig
2018	—	`conf`	Combining Deep Learning and Multi-atlas Label Fusion for Automated Placenta Segmentation from 3DUS. DATRA/PIPPI@MICCAI Baris U. Oguz, Jiancong Wang, Natalie Yushkevich, Alison M. Pouch, James C. Gee, Paul A. Yushkevich, Nadav Schwartz, Ipek Oguz
2018	—	`ed.`	Simulation and Synthesis in Medical Imaging - Third International Workshop, SASHIMI 2018, Held in Conjunction with MICCAI 2018, Granada, Spain, September 16, 2018, Proceedings SASHIMI@MICCAI Ali Gooya, Orcun Goksel, Ipek Oguz, Ninon Burgos
2018	—	`ed.`	Understanding and Interpreting Machine Learning in Medical Image Computing Applications - First International Workshops MLCN 2018, DLF 2018, and iMIMIC 2018, Held in Conjunction with MICCAI 2018, Granada, Spain, September 16-20, 2018, Proceedings MLCN/DLF/iMIMIC@MICCAI Danail Stoyanov, Zeike Taylor, Seyed Mostafa Kia, Ipek Oguz, Mauricio Reyes, Anne L. Martel, Lena Maier-Hein, Andre F. Marquand, Edouard Duchesnay, Tommy Löfstedt, Bennett A. Landman, M. Jorge Cardoso, Carlos A. Silva, Sérgio Pereira, Raphael Meier
2017	—	`conf`	Automated Segmentation of the Choroid in EDI-OCT Images with Retinal Pathology Using Convolution Neural Networks. FIFI/OMIA@MICCAI Min Chen, Jiancong Wang, Ipek Oguz, Brian L. Vanderbeek, James C. Gee
2017	—	`conf`	Dice Overlap Measures for Objects of Unknown Number: Application to Lesion Segmentation. BrainLes@MICCAI Ipek Oguz, Aaron Carass, Dzung L. Pham, Snehashis Roy, Nagesh Subbana, Peter A. Calabresi, Paul A. Yushkevich, Russell T. Shinohara, Jerry L. Prince
2017	A*	`conf`	Efficient Optimization for Hierarchically-Structured Interacting Segments (HINTS). CVPR Hossam N. Isack, Olga Veksler, Ipek Oguz, Milan Sonka, Yuri Boykov
2017	J	`jnl`	Efficient optimization for Hierarchically-structured Interacting Segments (HINTS). CoRR Hossam N. Isack, Olga Veksler, Ipek Oguz, Milan Sonka, Yuri Boykov
2017	—	`conf`	Gradient Boosted Trees for Corrective Learning. MLMI@MICCAI Baris U. Oguz, Russell T. Shinohara, Paul A. Yushkevich, Ipek Oguz
2017	—	`ed.`	Information Processing in Medical Imaging - 25th International Conference, IPMI 2017, Boone, NC, USA, June 25-30, 2017, Proceedings IPMI Marc Niethammer, Martin Styner, Stephen R. Aylward, Hongtu Zhu, Ipek Oguz, Pew-Thian Yap, Dinggang Shen
2017	—	`conf`	Joint Intensity Fusion Image Synthesis Applied to Multiple Sclerosis Lesion Segmentation. BrainLes@MICCAI Greg M. Fleishman, Alessandra Valcarcel, Dzung L. Pham, Snehashis Roy, Peter A. Calabresi, Paul A. Yushkevich, Russell T. Shinohara, Ipek Oguz
2017	B	`conf`	Machine learning in a graph framework for subcortical segmentation. Image Processing Zhihui Guo, Satyananda Kashyap, Milan Sonka, Ipek Oguz
2017	—	`conf`	Multiple Sclerosis Lesion Segmentation Using Joint Label Fusion. Patch-MI@MICCAI Mengjin Dong, Ipek Oguz, Nagesh Subbana, Peter A. Calabresi, Russell T. Shinohara, Paul A. Yushkevich
2016	—	`conf`	Automated Segmentation of Knee MRI Using Hierarchical Classifiers and Just Enough Interaction Based Learning: Data from Osteoarthritis Initiative. MICCAI (2) Satyananda Kashyap, Ipek Oguz, Honghai Zhang, Milan Sonka
2016	B	`conf`	Enhanced cortical thickness measurements for rodent brains via Lagrangian-based RK4 streamline computation. Image Processing Joohwi Lee, Sun Hyung Kim, Ipek Oguz, Martin Styner
2016	J	`jnl`	Entropy-based particle correspondence for shape populations. Int. J. Comput. Assist. Radiol. Surg. Ipek Oguz, Joshua E. Cates, Manasi Datar, Beatriz Paniagua, P. Thomas Fletcher, Clement Vachet, Martin Styner, Ross T. Whitaker
2016	—	`conf`	Globally Optimal Label Fusion with Shape Priors. MICCAI (2) Ipek Oguz, Satyananda Kashyap, Hongzhi Wang, Paul A. Yushkevich, Milan Sonka
2016	B	`conf`	Optimal retinal cyst segmentation from OCT images. Image Processing Ipek Oguz, Li Zhang, Michael D. Abràmoff, Milan Sonka
2016	—	`conf`	Statistical shape analysis of automatically segmented femur bones: Data from the osteoarthritis initiative. ISBI Satyananda Kashyap, Ipek Oguz, Milan Sonka
2015	B	`conf`	LOGISMOS-B for primates: primate cortical surface reconstruction and thickness measurement. Image Processing Ipek Oguz, Martin Styner, Mar Sanchez, Yundi Shi, Milan Sonka
2014	J	`jnl`	DTIPrep: quality control of diffusion-weighted images. Frontiers Neuroinformatics Ipek Oguz, Mahshid Farzinfar, Joy T. Matsui, François Budin, Zhexing Liu, Guido Gerig, Hans J. Johnson, Martin Andreas Styner
2014	J	`jnl`	LOGISMOS-B: Layered Optimal Graph Image Segmentation of Multiple Objects and Surfaces for the Brain. IEEE Trans. Medical Imaging Ipek Oguz, Milan Sonka
2014	—	`conf`	Robust Cortical Thickness Measurement with LOGISMOS-B. MICCAI (1) Ipek Oguz, Milan Sonka
2014	J	`jnl`	Tree-Oriented Analysis of Brain Artery Structure. J. Math. Imaging Vis. Sean Skwerer, Elizabeth Bullitt, Stephan Huckemann, Ezra Miller, Ipek Oguz, Megan Owen, Vic Patrangenaru, J. Scott Provan, J. S. Marron
2013	J	`jnl`	A midas plugin to enable construction of reproducible web-based image processing pipelines. Frontiers Neuroinformatics Michael Grauer, Patrick Reynolds, Marion Hoogstoel, François Budin, Martin Andreas Styner, Ipek Oguz
2013	B	`conf`	DTI quality control assessment via error estimation from Monte Carlo simulations. Image Processing Mahshid Farzinfar, Yin Li, Audrey R. Verde, Ipek Oguz, Guido Gerig, Martin A. Styner
2013	J	`jnl`	Diffusion imaging quality control via entropy of principal direction distribution. NeuroImage Mahshid Farzinfar, Ipek Oguz, Rachel Gimpel Smith, Audrey R. Verde, Cheryl Dietrich, Aditya Gupta, Maria L. Escolar, Joseph Piven, Sonia Pujol, Clement Vachet, Sylvain Gouttard, Guido Gerig, Stephen Dager, Robert C. McKinstry, Sarah Paterson, Alan C. Evans, Martin Andreas Styner
2013	J	`jnl`	Fully automated rodent brain MR image processing pipeline on a Midas server: from acquired images to region-based statistics. Frontiers Neuroinformatics François Budin, Marion Hoogstoel, Patrick Reynolds, Michael Grauer, Shonagh K. O'Leary-Moore, Ipek Oguz
2013	—	`conf`	Particle-Guided Image Registration. MICCAI (3) Joohwi Lee, Ilwoo Lyu, Ipek Oguz, Martin Andreas Styner
2011	B	`conf`	Automatic cortical thickness analysis on rodent brain. Image Processing Joohwi Lee, Cindy Ehlers, Fulton Crews, Marc Niethammer, François Budin, Beatriz Paniagua, Kathy Sulik, Josephine Johns, Martin Styner, Ipek Oguz
2011	B	`conf`	Automatic skull-stripping of rat MRI/DTI scans and atlas building. Image Processing Ipek Oguz, Joohwi Lee, François Budin, Ashley Rumple, Matthew McMurray, Cindy Ehlers, Fulton Crews, Josephine Johns, Martin Styner
2011	B	`conf`	Efficient, graph-based white matter connectivity from orientation distribution functions via multi-directional graph propagation. Image Processing Alexis Boucharin, Ipek Oguz, Clement Vachet, Yundi Shi, Mar Sanchez, Martin Styner
2011	B	`conf`	Group-wise automatic mesh-based analysis of cortical thickness. Image Processing Clement Vachet, Heather Cody Hazlett, Marc Niethammer, Ipek Oguz, Joshua E. Cates, Ross T. Whitaker, Joseph Piven, Martin Styner
2011	—	`conf`	Mandibular asymmetry characterization using generalized tensor-based morphometry. ISBI Beatriz Paniagua, Abeer Alhadidi, Lucia H. S. Cevidanes, Martin Styner, Ipek Oguz
2010	—	`conf`	Shape-correlated deformation statistics for respiratory motion prediction in 4D lung. Image-Guided Procedures Xiaoxiao Liu, Ipek Oguz, Stephen M. Pizer, Gig S. Mageras
2009	—	`conf`	Cortical Correspondence with Probabilistic Fiber Connectivity. IPMI Ipek Oguz, Marc Niethammer, Joshua E. Cates, Ross T. Whitaker, P. Thomas Fletcher, Clement Vachet, Martin Styner
2008	—	`conf`	Cortical correspondence using entropy-based particle systems and local features. ISBI Ipek Oguz, Joshua E. Cates, P. Thomas Fletcher, Ross T. Whitaker, Derek Cool, Stephen R. Aylward, Martin Andreas Styner
2008	—	`conf`	Minimum description length with local geometry. ISBI Martin Styner, Ipek Oguz, Tobias Heimann, Guido Gerig
2007	J	`jnl`	Finite volume flow simulations on arbitrary domains. Graph. Model. Jeremy D. Wendt, William V. Baxter III, Ipek Oguz, Ming C. Lin
2007	B	`conf`	Statistical group differences in anatomical shape analysis using Hotelling T2 metric. Image Processing Martin Styner, Ipek Oguz, Shun Xu, Dimitrios Pantazis, Guido Gerig
2005	—	`conf`	Corpus Callosum Subdivision Based on a Probabilistic Model of Inter-hemispheric Connectivity. MICCAI (2) Martin Andreas Styner, Ipek Oguz, Rachel Gimpel Smith, Carissa Cascio, Matthieu Jomier