Ion I. Mandoiu

172 papers A* 2A 7B 8C 6Misc 5Journal 71Unranked 53
YearRankTypeTitle / Venue / Authors
2026 — ed.
Computational Advances in Bio and Medical Sciences - 13th International Conference, ICCABS 2025, Atlanta, GA, USA, January 12-14, 2025, Revised Selected Papers
ICCABS
Mohammed Alser, Mukul S. Bansal, Yury Khudyakov, Serghei Mangul, Ion I. Mandoiu, Marmar Moussa, Murray Patterson, Sanguthevar Rajasekaran, Pavel Skums, Shibu Yooseph, Alexander Zelikovsky
2026 J jnl
MHASS: Microbiome HiFi Amplicon Sequencing Simulator.
Bioinform.
Rye Howard-Stone, Ion I. Mandoiu
2025 — conf
AmpliconHunter: A Scalable Tool for PCR Amplicon Prediction from Microbiome Samples.
ICCABS
Rye Howard-Stone, Ion I. Mandoiu
2025 — ed.
Computational Advances in Bio and Medical Sciences - 12th International Conference, ICCABS 2023, Norman, OK, USA, December 11-13, 2023, Revised Selected Papers
ICCABS
Mukul S. Bansal, Wei Chen, Yury Khudyakov, Ion I. Mandoiu, Marmar Moussa, Murray Patterson, Sanguthevar Rajasekaran, Pavel Skums, Sharma V. Thankachan, Alexander Zelikovsky
2025 J jnl
Editorial: Special Section on Computational Advances in Bio and Medical Sciences.
IEEE Trans. Comput. Biol. Bioinform.
Ion I. Mandoiu, Marmar R. Moussa, Sanguthevar Rajasekaran, Pavel Skums, Sharma V. Thankachan, Alex Zelikovsky
2023 J jnl
GeNeo: A Bioinformatics Toolbox for Genomics-Guided Neoepitope Prediction.
J. Comput. Biol.
Sahar Al Seesi, Anas Al-Okaily, Tatiana Shcheglova, Elham Sherafat, Fahad Alqahtani, Adam T. Hagymasi, Anupinder Kaur, Pramod Kumar Srivastava, Ion I. Mandoiu
2023 J jnl
Special Issue: 11th International Computational Advances in Bio and Medical Sciences (ICCABS 2021).
J. Comput. Biol.
Mukul S. Bansal, Ion I. Mandoiu, Marmar Moussa, Murray Patterson, Sanguthevar Rajasekaran, Pavel Skums, Alexander Zelikovsky
2022 — ed.
Computational Advances in Bio and Medical Sciences: 11th International Conference, ICCABS 2021, Virtual Event, December 16-18, 2021, Revised Selected Papers
ICCABS
Mukul S. Bansal, Ion I. Mandoiu, Marmar Moussa, Murray Patterson, Sanguthevar Rajasekaran, Pavel Skums, Alexander Zelikovsky
2022 J jnl
TNet: Transmission Network Inference Using Within-Host Strain Diversity and its Application to Geographical Tracking of COVID-19 Spread.
IEEE ACM Trans. Comput. Biol. Bioinform.
Saurav Dhar, Chengchen Zhang, Ion I. Mandoiu, Mukul S. Bansal
2021 — ed.
Computational Advances in Bio and Medical Sciences - 10th International Conference, ICCABS 2020, Virtual Event, December 10-12, 2020, Revised Selected Papers
ICCABS
Sumit Kumar Jha, Ion I. Mandoiu, Sanguthevar Rajasekaran, Pavel Skums, Alex Zelikovsky
2021 J jnl
Pipeline for Analyzing Activity of Metabolic Pathways in Planktonic Communities Using Metatranscriptomic Data.
J. Comput. Biol.
Filipp Rondel, Roya Hosseini, Bikram Sahoo, Sergey Knyazev, Igor Mandric, Frank Stewart, Ion I. Mandoiu, Bogdan Pasaniuc, Yuri Porozov, Alexander Zelikovsky
2021 J jnl
SC1: A Tool for Interactive Web-Based Single-Cell RNA-Seq Data Analysis.
J. Comput. Biol.
Marmar Moussa, Ion I. Mandoiu
2021 J jnl
Special Issue: 10th International Computational Advances in Bio and Medical Sciences (ICCABS 2020).
J. Comput. Biol.
Sumit Kumar Jha, Ion I. Mandoiu, Sanguthevar Rajasekaran, Pavel Skums, Alexander Zelikovsky
2021 J jnl
Special Issue: 9th International Computational Advances in Bio and Medical Sciences (ICCABS 2019).
J. Comput. Biol.
Ion I. Mandoiu, T. M. Murali, Giri Narasimhan, Sanguthevar Rajasekaran, Pavel Skums, Alexander Zelikovsky
2021 Misc conf
TreeFix-TP: Phylogenetic Error-Correction for Infectious Disease Transmission Network Inference.
PSB
Samuel Sledzieski, Chengchen Zhang, Ion I. Mandoiu, Mukul S. Bansal
2020 — ed.
Bioinformatics Research and Applications - 16th International Symposium, ISBRA 2020, Moscow, Russia, December 1-4, 2020, Proceedings
ISBRA
Zhipeng Cai, Ion I. Mandoiu, Giri Narasimhan, Pavel Skums, Xuan Guo
2020 — ed.
Computational Advances in Bio and Medical Sciences - 9th International Conference, ICCABS 2019, Miami, FL, USA, November 15-17, 2019, Revised Selected Papers
ICCABS
Ion I. Mandoiu, T. M. Murali, Giri Narasimhan, Sanguthevar Rajasekaran, Pavel Skums, Alexander Zelikovsky
2020 — conf
Computational Cell Cycle Analysis of Single Cell RNA-Seq Data.
ICCABS
Marmar Moussa, Ion I. Mandoiu
2020 — conf
Estimating Enzyme Participation in Metabolic Pathways for Microbial Communities from RNA-seq Data.
ISBRA
Filipp Rondel, Roya Hosseini, Bikram Sahoo, Sergey Knyazev, Igor Mandric, Frank Stewart, Ion I. Mandoiu, Bogdan Pasaniuc, Alex Zelikovsky
2020 — conf
Mitochondrial Haplogroup Assignment for High-Throughput Sequencing Data from Single Individual and Mixed DNA Samples.
ISBRA
Fahad Alqahtani, Ion I. Mandoiu
2020 — conf
SC1: A Tool for Interactive Web-Based Single Cell RNA-Seq Data Analysis.
ISBRA
Marmar Moussa, Ion I. Mandoiu
2020 J jnl
Semi-supervised learning for somatic variant calling and peptide identification in personalized cancer immunotherapy.
BMC Bioinform.
Elham Sherafat, Jordan Force, Ion I. Mandoiu
2020 J jnl
Statistical Mitogenome Assembly with RepeaTs.
J. Comput. Biol.
Fahad Alqahtani, Ion I. Mandoiu
2020 — conf
TNet: Phylogeny-Based Inference of Disease Transmission Networks Using Within-Host Strain Diversity.
ISBRA
Saurav Dhar, Chengchen Zhang, Ion I. Mandoiu, Mukul S. Bansal
2019 J jnl
12 Grand Challenges in Single-Cell Data Science.
PeerJ Prepr.
David Laehnemann, Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie C. Hicks, Mark D. Robinson, Catalina A. Vallejos, Niko Beerenwinkel, Kieran R. Campbell, Ahmed Mahfouz, Luca Pinello, Pavel Skums, Alexandros Stamatakis, Camille Stephan-Otto Attolini, Samuel Aparicio, Jasmijn A. Baaijens, Marleen Balvert, Buys de Barbanson, Antonio Cappuccio, Giacomo Corleone, Bas E. Dutilh, Maria Florescu, Victor Guryev, Rens Holmer, Katharina Jahn, Thamar Jessurun Lobo, Emma M. Keizer, Indu Khatri, Szymon M. Kielbasa, Jan O. Korbel, Alexey M. Kozlov, Tzu-Hao Kuo, Boudewijn P. F. Lelieveldt, Ion I. Mandoiu, John C. Marioni, Tobias Marschall, Felix Mölder, Amir Niknejad, Lukasz Raczkowski, Marcel J. T. Reinders, Jeroen de Ridder, Antoine-Emmanuel Saliba, Antonios Somarakis, Oliver Stegle, Fabian J. Theis, Huan Yang, Alex Zelikovsky, Alice C. McHardy, Benjamin J. Raphael, Sohrab P. Shah, Alexander Schönhuth
2019 J jnl
Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications.
IEEE ACM Trans. Comput. Biol. Bioinform.
Ion I. Mandoiu, Pavel Skums, Alexander Zelikovsky
2019 J jnl
Locality Sensitive Imputation for Single Cell RNA-Seq Data.
J. Comput. Biol.
Marmar Moussa, Ion I. Mandoiu
2019 — conf
SMART2: Multi-library Statistical Mitogenome Assembly with Repeats.
ICCABS
Fahad Alqahtani, Ion I. Mandoiu
2019 — conf
Workshop on Computational Advances in Molecular Epidemiology.
BCB
Yury Khudyakov, Ion I. Mandoiu, Pavel Skums, Alexander Zelikovsky
2018 — conf
ACM-BCB 2018 Computational Advances in Molecular Epidemiology (CAME) Chairs' Welcome.
BCB
Yury Khudyakov, Ion I. Mandoiu, Pavel Skums, Alexander Zelikovsky
2018 — conf
Locality Sensitive Imputation for Single-Cell RNA-Seq Data.
ISBRA
Marmar Moussa, Ion I. Mandoiu
2018 — ch.
Practical Approximations of Steiner Trees in Uniform Orientation Metrics.
Handbook of Approximation Algorithms and Metaheuristics (1)
Andrew B. Kahng, Ion I. Mandoiu, Alexander Zelikovsky
2018 — ch.
QoS Multimedia Multicast Routing.
Handbook of Approximation Algorithms and Metaheuristics (2)
Ion I. Mandoiu, Alex Olshevsky, Alexander Zelikovsky
2018 — conf
SC1: A web-based single cell RNA-seq analysis pipeline.
ICCABS
Marmar Moussa, Ion I. Mandoiu
2018 — conf
Statistical Mitogenome Assembly with Repeats.
ICCABS
Fahad Alqahtani, Ion I. Mandoiu
2017 — conf
CAME 2017: 6th Workshop on Computational Advances in Molecular Epidemiology.
BCB
Yury Khudyakov, Ion I. Mandoiu, Pavel Skums, Alexander Zelikovsky
2017 J jnl
Fast bootstrapping-based estimation of confidence intervals of expression levels and differential expression from RNA-Seq data.
Bioinform.
Igor Mandric, Yvette Temate-Tiagueu, Tatiana Shcheglova, Sahar Al Seesi, Alex Zelikovsky, Ion I. Mandoiu
2017 J jnl
Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications.
IEEE ACM Trans. Comput. Biol. Bioinform.
Robert W. Harrison, Ion I. Mandoiu, Alexander Zelikovsky
2017 J jnl
Identification of cancer-specific motifs in mimotope profiles of serum antibody repertoire.
BMC Bioinform.
Ekaterina Gerasimov, Alex Zelikovsky, Ion I. Mandoiu, Yurij Ionov
2017 — conf
Metabolic Analysis of Metatranscriptomic Data from Planktonic Communities.
ISBRA
Igor Mandric, Sergey Knyazev, Cory Padilla, Frank Stewart, Ion I. Mandoiu, Alex Zelikovsky
2016 — conf
Pairing T Cell Receptor α and β sequences using pooling and min-cost flows.
ICCABS
Tyler Daddio, Ion I. Mandoiu
2015 — ed.
Bioinformatics Research and Applications - 11th International Symposium, ISBRA 2015, Norfolk, VA, USA, June 7-10, 2015 Proceedings
ISBRA
Robert W. Harrison, Yaohang Li, Ion I. Mandoiu
2015 J jnl
Computational framework for next-generation sequencing of heterogeneous viral populations using combinatorial pooling.
Bioinform.
Pavel Skums, Alexander Artyomenko, Olga Glebova, Sumathi Ramachandran, Ion I. Mandoiu, David S. Campo, Zoya Dimitrova, Alex Zelikovsky, Yuri Khudyakov
2015 — conf
Identification of cancer-specific motifs in mimotope profiles of serum antibody repertoire.
ICCABS
Ekaterina Nenastyeva, Alex Zelikovsky, Yurij Ionov, Ion I. Mandoiu
2015 J jnl
Metabolic Pathway Predictions for Metabolomics: A Molecular Structure Matching Approach.
J. Chem. Inf. Model.
Mai Hamdalla, Sanguthevar Rajasekaran, David F. Grant, Ion I. Mandoiu
2014 — conf
Deterministic regression algorithm for transcriptome frequency estimation.
ICCABS
Adrian Caciula, Olga Glebova, Alexander Artyomenko, Serghei Mangul, James Lindsay, Ion I. Mandoiu, Alex Zelikovsky
2014 J jnl
Feature selection and classifier performance on diverse bio- logical datasets.
BMC Bioinform.
Edward Hemphill, James Lindsay, Chih Lee, Ion I. Mandoiu, Craig E. Nelson
2014 J jnl
ILP-based maximum likelihood genome scaffolding.
BMC Bioinform.
James Lindsay, Hamed Salooti, Ion I. Mandoiu, Alexander Zelikovsky
2014 — conf
SILP3: Maximum likelihood approach to scaffolding.
ICCABS
Igor Mandric, James Lindsay, Ion I. Mandoiu, Alex Zelikovsky
2013 J jnl
BioSM: Metabolomics Tool for Identifying Endogenous Mammalian Biochemical Structures in Chemical Structure Space.
J. Chem. Inf. Model.
Mai Hamdalla, Ion I. Mandoiu, Dennis W. Hill, Sanguthevar Rajasekaran, David F. Grant
2013 — conf
Estimation of viral population structure from amplicon-based reads.
ICCABS
Nicholas Mancuso, Alexander Artyomenko, Alex Zelikovsky, Pavel Skums, Ion I. Mandoiu
2013 J jnl
Guest Editors' introduction to the special section on bioinformatics research and applications.
IEEE ACM Trans. Comput. Biol. Bioinform.
Ion I. Mandoiu, Jianxin Wang, Alexander Zelikovsky
2013 J jnl
In Silico Enzymatic Synthesis of a 400 000 Compound Biochemical Database for Nontargeted Metabolomics.
J. Chem. Inf. Model.
Lochana C. Menikarachchi, Dennis W. Hill, Mai Hamdalla, Ion I. Mandoiu, David F. Grant
2013 — conf
Monte-Carlo Regression algorithm for isoform frequency estimation from RNA-Seq data.
ICCABS
Adrian Caciula, Alex Zelikovsky, Serghei Mangul, James Lindsay, Ion I. Mandoiu
2013 — conf
Optimizing pooling strategies for the massive next-generation sequencing of viral samples.
ICCABS
Pavel Skums, Olga Glebova, Alex Zelikovsky, Ion I. Mandoiu, Yuri Khudyakov
2013 J jnl
Reconstruction of viral population structure from next-generation sequencing data using multicommodity flows.
BMC Bioinform.
Pavel Skums, Nicholas Mancuso, Alexander Artyomenko, Bassam Tork, Ion I. Mandoiu, Yuri Khudyakov, Alex Zelikovsky
2013 — conf
Reference assisted nucleic acid sequence reconstruction from mass spectrometry data.
ICCABS
Gabriel Ilie, Alex Zelikovsky, Ion I. Mandoiu
2013 — conf
Towards whole transcriptome deconvolution using single-cell data.
ICCABS
James Lindsay, Craig E. Nelson, Ion I. Mandoiu
2013 — conf
Transcriptome assembly and quantification from Ion Torrent RNA-Seq data.
ICCABS
Serghei Mangul, Sahar Al Seesi, Ion I. Mandoiu, Adrian Caciula, Alex Zelikovsky, Dumitru Brinza
2013 — conf
kGEM: An EM-based algorithm for local reconstruction of viral quasispecies.
ICCABS
Alexander Artyomenko, Nicholas Mancuso, Alex Zelikovsky, Pavel Skums, Ion I. Mandoiu
2012 — ed.
Bioinformatics Research and Applications - 8th International Symposium, ISBRA 2012, Dallas, TX, USA, May 21-23, 2012. Proceedings
ISBRA
Leonidas G. Bleris, Ion I. Mandoiu, Russell Schwartz, Jianxin Wang
2012 J jnl
Guest Editors' Introduction.
BMC Bioinform.
Jianer Chen, Ion I. Mandoiu, Raj Sunderraman, Jianxin Wang, Alexander Zelikovsky
2012 — ed.
IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2012, Las Vegas, NV, USA, February 23-25, 2012
ICCABS
Sorin Istrail, Ion I. Mandoiu, Mihai Pop, Sanguthevar Rajasekaran, John L. Spouge
2012 J jnl
Improved transcriptome quantification and reconstruction from RNA-Seq reads using partial annotations.
Silico Biol.
Serghei Mangul, Adrian Caciula, Olga Glebova, Ion I. Mandoiu, Alex Zelikovsky
2012 — conf
Poster: Accurate scaffolding of large genomes using integer programming and Non-Serial Dynamic Programming.
ICCABS
James Lindsay, Ion I. Mandoiu, Hamed Salooti, Alexander Zelikovsky
2012 J jnl
Reconstructing viral quasispecies from NGS amplicon reads.
Silico Biol.
Nicholas Mancuso, Bassam Tork, Pavel Skums, Lilia Ganova-Raeva, Ion I. Mandoiu, Alex Zelikovsky
2012 — conf
Scalable genome scaffolding using integer linear programming.
BCB
James Lindsay, Hamed Salooti, Alexander Zelikovsky, Ion I. Mandoiu
2012 J jnl
TRIP: a method for novel transcript reconstruction from paired-end RNA-seq reads.
BMC Bioinform.
Serghei Mangul, Adrian Caciula, Dumitru Brinza, Ion I. Mandoiu, Alex Zelikovsky
2012 — conf
The use of graph matching algorithms to identify biochemical substructures in synthetic chemical compounds: Application to metabolomics.
ICCABS
Mai Hamdalla, David F. Grant, Ion I. Mandoiu, Dennis W. Hill, Sanguthevar Rajasekaran, Reda A. Ammar
2012 — conf
Workshop: A maximum likelihood method for quasispecies spectrum assembly.
ICCABS
Nicholas Mancuso, Bassam Tork, Pavel Skums, Lilia Ganova-Raeva, Ion I. Mandoiu, Alexander Zelikovsky
2012 — conf
Workshop: Bioinformatics methods for reconstruction of Infectious Bronchitis Virus quasispecies from next generation sequencing data.
ICCABS
Rachel J. O'Neill, Ion I. Mandoiu, Mazhar I. Khan, Craig Obergfell, Hongjun Wang, Andrew Bligh, Bassam Tork, Nicholas Mancuso, Alexander Zelikovsky
2012 — conf
Workshop: Inference of allele specific expression levels from RNA-Seq data.
ICCABS
Sahar Al Seesi, Ion I. Mandoiu
2012 — conf
Workshop: Novel transcript reconstruction from paired-end RNA-Seq reads using fragment length distribution.
ICCABS
Serghei Mangul, Adrian Caciula, Ion I. Mandoiu, Alexander Zelikovsky
2011 — conf
Accurate Estimation of Gene Expression Levels from DGE Sequencing Data.
ISBRA
Marius Nicolae, Ion I. Mandoiu
2011 J jnl
Estimation of alternative splicing isoform frequencies from RNA-Seq data.
Algorithms Mol. Biol.
Marius Nicolae, Serghei Mangul, Ion I. Mandoiu, Alex Zelikovsky
2011 — ed.
IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2011, Orlando, FL, USA, February 3-5, 2011
ICCABS
Ion I. Mandoiu, Satoru Miyano, Teresa M. Przytycka, Sanguthevar Rajasekaran
2011 J jnl
Inferring viral quasispecies spectra from 454 pyrosequencing reads.
BMC Bioinform.
Irina Astrovskaya, Bassam Tork, Serghei Mangul, Kelly Westbrooks, Ion I. Mandoiu, Peter Balfe, Alex Zelikovsky
2011 J jnl
Linkage disequilibrium based genotype calling from low-coverage shotgun sequencing reads.
BMC Bioinform.
Jorge Duitama, Justin Kennedy, Sanjiv Dinakar, Yözen Hernández, Yufeng Wu, Ion I. Mandoiu
2011 C conf
Maximum Likelihood Estimation of Incomplete Genomic Spectrum from HTS Data.
WABI
Serghei Mangul, Irina Astrovskaya, Marius Nicolae, Bassam Tork, Ion I. Mandoiu, Alexander Zelikovsky
2011 J jnl
Optimal Testing of Digital Microfluidic Biochips.
INFORMS J. Comput.
Bogdan Pasaniuc, Robert S. Garfinkel, Ion I. Mandoiu, Alexander Zelikovsky
2011 — conf
Poster: Empirical comparison of protocols for sequencing-based gene and isoform expression profiling.
ICCABS
Marius Nicolae, Ion I. Mandoiu
2011 — conf
Poster: Scaffolding draft genomes using paired sequencing data.
ICCABS
James Lindsay, J. Zhang, T. Farnham, Y. Wu, Ion I. Mandoiu, Rachel J. O'Neill, Hamed Salooti, E. Bullwinkel, Alexander Zelikovsky
2011 — conf
Poster: ViSpA: Viral spectrum assembling method.
ICCABS
Irina Astrovskaya, Bassam Tork, Serghei Mangul, Kelly Westbrooks, Ion I. Mandoiu, Peter Balfe, Alexander Zelikovsky
2011 — conf
RNA-Seq based discovery and reconstruction of unannotated transcripts in partially annotated genomes.
BIBM Workshops
Serghei Mangul, Adrian Caciula, Ion I. Mandoiu, Alexander Zelikovsky
2011 — conf
Towards accurate detection and genotyping of expressed variants from whole transcriptome sequencing data.
ICCABS
Jorge Duitama, Pramod Kumar Srivastava, Ion I. Mandoiu
2011 — conf
Viral quasispecies reconstruction from amplicon 454 pyrosequencing reads.
BIBM Workshops
Nicholas Mancuso, Bassam Tork, Pavel Skums, Ion I. Mandoiu, Alexander Zelikovsky
2011 — conf
Workshop: The utility of next generation sequencing for genome scale studies.
ICCABS
Rachel J. O'Neill, James Lindsay, Dawn Carone, Sahar Al Seesi, Thomas Heider, Ion I. Mandoiu, Andrew Pask
2010 C conf
Estimation of Alternative Splicing isoform Frequencies from RNA-Seq Data.
WABI
Marius Nicolae, Serghei Mangul, Ion I. Mandoiu, Alexander Zelikovsky
2010 — conf
Estimation of alternative splicing isoform frequencies from RNA-Seq data.
Structure Discovery in Biology: Motifs, Networks & Phylogenies
Marius Nicolae, Serghei Mangul, Ion I. Mandoiu, Alex Zelikovsky
2010 J jnl
Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications.
IEEE ACM Trans. Comput. Biol. Bioinform.
Ion I. Mandoiu, Giri Narasimhan, Yi Pan, Yanqing Zhang
2009 — ed.
Bioinformatics Research and Applications, 5th International Symposium, ISBRA 2009, Fort Lauderdale, FL, USA, May 13-16, 2009, Proceedings
ISBRA
Ion I. Mandoiu, Giri Narasimhan, Yanqing Zhang
2009 J jnl
GEDI: Scalable Algorithms for Genotype Error Detection and Imputation
CoRR
Justin Kennedy, Ion I. Mandoiu, Bogdan Pasaniuc
2009 — conf
Genotype and Haplotype Reconstruction from Low-Coverage Short Sequencing Reads.
BICoB
Ion I. Mandoiu
2009 J jnl
Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications.
IEEE ACM Trans. Comput. Biol. Bioinform.
Ion I. Mandoiu, Yi Pan, Raj Sunderraman, Alexander Zelikovsky
2009 — conf
Imputation-Based Local Ancestry Inference in Admixed Populations.
ISBRA
Bogdan Pasaniuc, Justin Kennedy, Ion I. Mandoiu
2009 J jnl
The Birth of New Genes by RNA- and DNA-Mediated Duplication during Mammalian Evolution.
J. Comput. Biol.
Jin Jun, Paul Ryvkin, Edward Hemphill, Ion I. Mandoiu, Craig E. Nelson
2008 — ed.
Bioinformatics Research and Applications, Fourth International Symposium, ISBRA 2008, Atlanta, GA, USA, May 6-9, 2008. Proceedings
ISBRA
Ion I. Mandoiu, Raj Sunderraman, Alexander Zelikovsky
2008 — conf
Estimating the Relative Contributions of New Genes from Retrotransposition and Segmental Duplication Events during Mammalian Evolution.
RECOMB-CG
Jin Jun, Paul Ryvkin, Edward Hemphill, Ion I. Mandoiu, Craig E. Nelson
2008 C conf
Faster greedy algorithms for Multiple Degenerate Primer Selection.
BIBE
Sudha Balla, Sanguthevar Rajasekaran, Ion I. Mandoiu
2008 J jnl
Genotype Error Detection Using Hidden Markov Models of Haplotype Diversity.
J. Comput. Biol.
Justin Kennedy, Ion I. Mandoiu, Bogdan Pasaniuc
2008 J jnl
Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications.
IEEE ACM Trans. Comput. Biol. Bioinform.
Ion I. Mandoiu, Yi Pan, Alexander Zelikovsky
2008 J jnl
Highly Scalable Genotype Phasing by Entropy Minimization.
IEEE ACM Trans. Comput. Biol. Bioinform.
Alexander Gusev, Ion I. Mandoiu, Bogdan Pasaniuc
2008 B conf
Primer Selection Methods for Detection of Genomic Inversions and Deletions via PAMP.
APBC
Bhaskar DasGupta, Jin Jun, Ion I. Mandoiu
2008 — ed.
The Tenth International Workshop on System-Level Interconnect Prediction (SLIP 2008), Newcastle, UK, April 5-8, 2008, Proceedings
SLIP
Ion I. Mandoiu, Andrew A. Kennings
2007 — ed.
Bioinformatics Research and Applications, Third International Symposium, ISBRA 2007, Atlanta, GA, USA, May 7-10, 2007, Proceedings
ISBRA
Ion I. Mandoiu, Alexander Zelikovsky
2007 J jnl
Efficient Algorithms for degenerate Primer Search.
Int. J. Found. Comput. Sci.
Sudha Balla, Sanguthevar Rajasekaran, Ion I. Mandoiu
2007 J jnl
Enhanced Design Flow and Optimizations for Multiproject Wafers.
IEEE Trans. Comput. Aided Des. Integr. Circuits Syst.
Andrew B. Kahng, Ion I. Mandoiu, Xu Xu, Alexander Zelikovsky
2007 C conf
Genotype Error Detection Using Hidden Markov Models of Haplotype Diversity.
WABI
Justin Kennedy, Ion I. Mandoiu, Bogdan Pasaniuc
2007 J jnl
Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications.
IEEE ACM Trans. Comput. Biol. Bioinform.
Ion I. Mandoiu, Yi Pan, Alexander Zelikovsky
2007 — ch.
Multicommodity Flow Algorithms for Buffered Global Routing.
Handbook of Approximation Algorithms and Metaheuristics
Ion I. Mandoiu, Andrew B. Kahng, Christoph Albrecht, Alexander Zelikovsky
2007 — ch.
Practical Approximations of Steiner Trees in Uniform Orientation Metrics.
Handbook of Approximation Algorithms and Metaheuristics
Ion I. Mandoiu, Andrew B. Kahng, Alexander Zelikovsky
2007 — ch.
QoS Multimedia Multicast Routing.
Handbook of Approximation Algorithms and Metaheuristics
Ion I. Mandoiu, Alex Olshevsky, Alexander Zelikovsky
2007 J jnl
Selected Papers from the 1st ACIS International Workshop on Self-Assembling Wireless Networks.
J. Univers. Comput. Sci.
Gruia Calinescu, Ion I. Mandoiu, Alexander Zelikovsky, Marius Zimand
2007 — ed.
The Ninth International Workshop on System-Level Interconnect Prediction (SLIP 2007), Austin, Texas, USA, March 17-18, 2007, Proceedings
SLIP
Andrew A. Kennings, Ion I. Mandoiu
2006 J jnl
Computer-Aided Optimization of DNA Array Design and Manufacturing.
IEEE Trans. Comput. Aided Des. Integr. Circuits Syst.
Andrew B. Kahng, Ion I. Mandoiu, Sherief Reda, Xu Xu, Alexander Zelikovsky
2006 J jnl
Exact and Approximation Algorithms for DNA Tag Set Design.
J. Comput. Biol.
Ion I. Mandoiu, Dragos Trinca
2006 Misc conf
High-Throughput SNP Genotyping by SBE/SBH.
International Conference on Computational Science (2)
Ion I. Mandoiu, Claudia Prajescu
2006 — conf
Highly Scalable Genotype Phasing by Entropy Minimization.
EMBC
Bogdan Pasaniuc, Ion I. Mandoiu
2006 Misc conf
Minimum Multicolored Subgraph Problem in Multiplex PCR Primer Set Selection and Population Haplotyping.
International Conference on Computational Science (2)
Mohammad Taghi Hajiaghayi, Kamal Jain, Lap Chi Lau, Ion I. Mandoiu, Alexander Russell, Vijay V. Vazirani
2006 J jnl
Power Efficient Range Assignment for Symmetric Connectivity in Static Ad Hoc Wireless Networks.
Wirel. Networks
Ernst Althaus, Gruia Calinescu, Ion I. Mandoiu, Sushil K. Prasad, N. Tchervenski, Alexander Zelikovsky
2005 J jnl
DNA-BAR: distinguisher selection for DNA barcoding.
Bioinform.
Bhaskar DasGupta, Kishori M. Konwar, Ion I. Mandoiu, Alexander A. Shvartsman
2005 J jnl
Exact and Approximation Algorithms for DNA Tag Set Design
CoRR
Ion I. Mandoiu, Dragos Trinca
2005 B conf
Exact and Approximation Algorithms for DNA Tag Set Design.
CPM
Ion I. Mandoiu, Dragos Trinca
2005 J jnl
High-Throughput SNP Genotyping by SBE/SBH
CoRR
Ion I. Mandoiu, Claudia Prajescu
2005 J jnl
Highly Scalable Algorithms for Robust String Barcoding
CoRR
Bhaskar DasGupta, Kishori M. Konwar, Ion I. Mandoiu, Alexander A. Shvartsman
2005 Misc conf
Highly Scalable Algorithms for Robust String Barcoding.
International Conference on Computational Science (2)
Bhaskar DasGupta, Kishori M. Konwar, Ion I. Mandoiu, Alexander A. Shvartsman
2005 J jnl
Highly scalable algorithms for robust string barcoding.
Int. J. Bioinform. Res. Appl.
Bhaskar DasGupta, Kishori M. Konwar, Ion I. Mandoiu, Alexander A. Shvartsman
2005 J jnl
Improved Approximation Algorithms for the Quality of Service Multicast Tree Problem.
Algorithmica
Marek Karpinski, Ion I. Mandoiu, Alexander Olshevsky, Alexander Zelikovsky
2005 J jnl
Improved Tag Set Design and Multiplexing Algorithms for Universal Arrays
CoRR
Ion I. Mandoiu, Claudia Prajescu, Dragos Trinca
2005 Misc conf
Improved Tag Set Design and Multiplexing Algorithms for Universal Arrays.
International Conference on Computational Science (2)
Ion I. Mandoiu, Claudia Prajescu, Dragos Trinca
2005 J jnl
Improved Tag Set Design and Multiplexing Algorithms for Universal Arrays.
Trans. Comp. Sys. Biology
Ion I. Mandoiu, Claudia Prajescu, Dragos Trinca
2005 B conf
Improved algorithms for multiplex PCR primer set selection with amplification length constraints.
APBC
Kishori M. Konwar, Ion I. Mandoiu, Alexander Russell, Alexander A. Shvartsman
2005 J jnl
Layout-aware scan chain synthesis for improved path delay fault coverage.
IEEE Trans. Comput. Aided Des. Integr. Circuits Syst.
Puneet Gupta, Andrew B. Kahng, Ion I. Mandoiu, Puneet Sharma
2005 J jnl
Multicommodity Flow Algorithms for Buffered Global Routing
CoRR
Christoph Albrecht, Andrew B. Kahng, Ion I. Mandoiu, Alexander Zelikovsky
2005 J jnl
The Y architecture for on-chip interconnect: analysis and methodology.
IEEE Trans. Comput. Aided Des. Integr. Circuits Syst.
Hongyu Chen, Chung-Kuan Cheng, Andrew B. Kahng, Ion I. Mandoiu, Qinke Wang, Bo Yao
2004 J jnl
Approximation Algorithms for Minimum PCR Primer Set Selection with Amplification Length and Uniqueness Constraints
CoRR
Kishori M. Konwar, Ion I. Mandoiu, Alexander Russell, Alexander A. Shvartsman
2004 — conf
Multi-project reticle floorplanning and wafer dicing.
ISPD
Andrew B. Kahng, Ion I. Mandoiu, Qinke Wang, Xu Xu, Alexander Zelikovsky
2004 J jnl
Nontree routing for reliability and yield improvement [IC layout].
IEEE Trans. Comput. Aided Des. Integr. Circuits Syst.
Andrew B. Kahng, Bao Liu, Ion I. Mandoiu
2004 J jnl
Scalable Heuristics for Design of DNA Probe Arrays.
J. Comput. Biol.
Andrew B. Kahng, Ion I. Mandoiu, Pavel A. Pevzner, Sherief Reda, Alexander Zelikovsky
2004 J jnl
Selecting Forwarding Neighbors in Wireless Ad Hoc Networks.
Mob. Networks Appl.
Gruia Calinescu, Ion I. Mandoiu, Peng-Jun Wan, Alexander Zelikovsky
2003 C conf
Design Flow Enhancements for DNA Arrays.
ICCD
Andrew B. Kahng, Ion I. Mandoiu, Sherief Reda, Xu Xu, Alexander Zelikovsky
2003 B conf
Engineering a scalable placement heuristic for DNA probe arrays.
RECOMB
Andrew B. Kahng, Ion I. Mandoiu, Pavel A. Pevzner, Sherief Reda, Alexander Zelikovsky
2003 — conf
Estimation of wirelength reduction for lambda-geometry vs. manhattan placement and routing.
SLIP
Hongyu Chen, Chung-Kuan Cheng, Andrew B. Kahng, Ion I. Mandoiu, Qinke Wang
2003 A conf
Evaluation of Placement Techniques for DNA Probe Array Layout.
ICCAD
Andrew B. Kahng, Ion I. Mandoiu, Sherief Reda, Xu Xu, Alexander Zelikovsky
2003 — conf
Highly scalable algorithms for rectilinear and octilinear Steiner trees.
ASP-DAC
Andrew B. Kahng, Ion I. Mandoiu, Alexander Zelikovsky
2003 B conf
Improved Approximation Algorithms for the Quality of Service Steiner Tree Problem.
WADS
Marek Karpinski, Ion I. Mandoiu, Alexander Olshevsky, Alexander Zelikovsky
2003 A conf
Layout-Aware Scan Chain Synthesis for Improved Path Delay Fault Coverage.
ICCAD
Puneet Gupta, Andrew B. Kahng, Ion I. Mandoiu, Puneet Sharma
2003 J jnl
Minimum buffered routing with bounded capacitive load for slew rate and reliability control.
IEEE Trans. Comput. Aided Des. Integr. Circuits Syst.
Charles J. Alpert, Andrew B. Kahng, Bao Liu, Ion I. Mandoiu, Alexander Zelikovsky
2003 J jnl
On the skew-bounded minimum-buffer routing tree problem.
IEEE Trans. Comput. Aided Des. Integr. Circuits Syst.
Christoph Albrecht, Andrew B. Kahng, Bao Liu, Ion I. Mandoiu, Alexander Zelikovsky
2003 B conf
Power efficient range assignment in ad-hoc wireless networks.
WCNC
Ernst Althaus, Gruia Calinescu, Ion I. Mandoiu, Sushil K. Prasad, N. Tchervenski, Alexander Zelikovsky
2003 B conf
Primal-dual algorithms for QoS multimedia multicast.
GLOBECOM
Gruia Calinescu, Cristina G. Fernandes, Ion I. Mandoiu, Alexander Olshevsky, K. Yang, Alexander Zelikovsky
2003 A conf
The Y-Architecture for On-Chip Interconnect: Analysis and Methodology.
ICCAD
Hongyu Chen, Chung-Kuan Cheng, Andrew B. Kahng, Ion I. Mandoiu, Qinke Wang, Bo Yao
2002 J jnl
A primal-dual schema based approximation algorithm for the element connectivity problem.
J. Algorithms
Kamal Jain, Ion I. Mandoiu, Vijay V. Vazirani, David P. Williamson
2002 — conf
Auctions with Buyer Preferences.
Information Systems: The e-Business Challenge
C. Bandela, Yu Chen, Andrew B. Kahng, Ion I. Mandoiu, Alexander Zelikovsky
2002 C conf
Border Length Minimization in DNA Array Design.
WABI
Andrew B. Kahng, Ion I. Mandoiu, Pavel A. Pevzner, Sherief Reda, Alexander Zelikovsky
2002 — conf
Floorplan Evaluation with Timing-Driven Global Wireplanning, Pin Assignment and Buffer/Wire Sizing.
ASP-DAC/VLSI Design
Christoph Albrecht, Andrew B. Kahng, Ion I. Mandoiu, Alexander Zelikovsky
2002 A conf
Non-tree routing for reliability and yield improvement.
ICCAD
Andrew B. Kahng, Bao Liu, Ion I. Mandoiu
2002 J jnl
Provably good global buffering by generalized multiterminalmulticommodity flow approximation.
IEEE Trans. Comput. Aided Des. Integr. Circuits Syst.
Feodor F. Dragan, Andrew B. Kahng, Ion I. Mandoiu, Sudhakar Muddu, Alexander Zelikovsky
2002 — conf
Symmetric Connectivity with Minimum Power Consumption in Radio Networks.
IFIP TCS
Gruia Calinescu, Ion I. Mandoiu, Alexander Zelikovsky
2001 A conf
Minimum-Buffered Routing of Non-Critical Nets for Slew Rate and Reliability Control.
ICCAD
Charles J. Alpert, Andrew B. Kahng, Bao Liu, Ion I. Mandoiu, Alexander Zelikovsky
2001 B conf
Practical Approximation Algorithms for Separable Packing Linear Programs.
WADS
Feodor F. Dragan, Andrew B. Kahng, Ion I. Mandoiu, Sudhakar Muddu, Alexander Zelikovsky
2001 J jnl
Practical Approximation Algorithms for Zero- and Bounded-Skew Trees.
SIAM J. Discret. Math.
Alexander Zelikovsky, Ion I. Mandoiu
2001 A* conf
Practical approximation algorithms for zero- and bounded-skew trees.
SODA
Alexander Zelikovsky, Ion I. Mandoiu
2001 — conf
Provably good global buffering by multi-terminal multicommodity flow approximation.
ASP-DAC
Feodor F. Dragan, Andrew B. Kahng, Ion I. Mandoiu, Sudhakar Muddu, Alexander Zelikovsky
2001 — conf
Selecting forwarding neighbors in wireless Ad Hoc networks.
DIAL-M
Gruia Calinescu, Ion I. Mandoiu, Peng-Jun Wan, Alexander Zelikovsky
2000 J jnl
A new heuristic for rectilinear Steiner trees.
IEEE Trans. Comput. Aided Des. Integr. Circuits Syst.
Ion I. Mandoiu, Vijay V. Vazirani, Joseph L. Ganley
2000 J jnl
A note on the MST heuristic for bounded edge-length Steiner trees with minimum number of Steiner points.
Inf. Process. Lett.
Ion I. Mandoiu, Alexander Zelikovsky
2000 A conf
Provably Good Global Buffering Using an Available Buffer Block Plan.
ICCAD
Feodor F. Dragan, Andrew B. Kahng, Ion I. Mandoiu, Sudhakar Muddu, Alexander Zelikovsky
1999 A* conf
A Primal-Dual Schema Based Approximation Algorithm for the Element Connectivity Problem.
SODA
Kamal Jain, Ion I. Mandoiu, Vijay V. Vazirani, David P. Williamson
1999 A conf
A new heuristic for rectilinear Steiner trees.
ICCAD
Ion I. Mandoiu, Vijay V. Vazirani, Joseph L. Ganley
1998 J jnl
Optimum Extensions of Prefix Codes.
Inf. Process. Lett.
Ion I. Mandoiu
1998 J jnl
The 'Art of Trellis Decoding' Is Computationally Hardi - For Large Fields.
IEEE Trans. Inf. Theory
Kamal Jain, Ion I. Mandoiu, Vijay V. Vazirani