Ioannis P. Androulakis

42 papers C 3Journal 26Unranked 2
YearRankTypeTitle / Venue / Authors
2023 J jnl
HPA axis differential flatness and Liouvillian study for higher resiliency investigations.
IMA J. Math. Control. Inf.
Florentina Nicolau, Hugues Mounier, Ioannis P. Androulakis
2019 J jnl
The Impact of Stochasticity and Its Control on a Model of the Inflammatory Response.
Comput.
Panteleimon D. Mavroudis, Jeremy D. Scheff, John C. Doyle, Yoram Vodovotz, Ioannis P. Androulakis
2019 J jnl
The quest for digital health: From diseases to patients.
Comput. Chem. Eng.
Ioannis P. Androulakis
2017 J jnl
On the analysis of complex biological supply chains: From process systems engineering to quantitative systems pharmacology.
Comput. Chem. Eng.
Rohit T. Rao, Megerle L. Scherholz, Clara Hartmanshenn, Seul-A. Bae, Ioannis P. Androulakis
2014 J jnl
A chemical engineer's perspective on health and disease.
Comput. Chem. Eng.
Ioannis P. Androulakis
2014 J jnl
Bioinformatics analysis of transcriptional regulation of circadian genes in rat liver.
BMC Bioinform.
Tung T. Nguyen, John S. A. Mattick, Qian Yang, Mehmet A. Orman, Marianthi G. Ierapetritou, Francois Berthiaume, Ioannis P. Androulakis
2014 J jnl
Biosystems modeling and engineering.
Comput. Chem. Eng.
Andreas A. Linninger, Ioannis P. Androulakis
2013 J jnl
A multiscale modeling approach to inflammation: A case study in human endotoxemia.
J. Comput. Phys.
Jeremy D. Scheff, Panteleimon D. Mavroudis, Panagiota T. Foteinou, Gary An, Steve E. Calvano, John Doyle, Thomas E. Dick, Stephen F. Lowry, Yoram Vodovotz, Ioannis P. Androulakis
2011 J jnl
Model building using bi-level optimization.
J. Glob. Optim.
Georges K. Saharidis, Ioannis P. Androulakis, Marianthi G. Ierapetritou
2011 J jnl
Pulsatile Glucocorticoid Secretion: Origins and Downstream Effects.
IEEE Trans. Biomed. Eng.
Jeremy D. Scheff, Alyssa K. Kosmides, Steve E. Calvano, Stephen F. Lowry, Ioannis P. Androulakis
2010 J jnl
Circadian signatures in rat liver: from gene expression to pathways.
BMC Bioinform.
Meric A. Ovacik, Siddharth Sukumaran, Richard R. Almon, Debra C. DuBois, William J. Jusko, Ioannis P. Androulakis
2010 J jnl
Comparative analysis of acute and chronic corticosteroid pharmacogenomic effects in rat liver: Transcriptional dynamics and regulatory structures.
BMC Bioinform.
Tung T. Nguyen, Richard R. Almon, Debra C. DuBois, William J. Jusko, Ioannis P. Androulakis
2010 C conf
Dynamic Complexity of the Temporal Transcriptional Regulation Program in Human Endotoxemia.
BIBE
Tung T. Nguyen, Panagiota T. Foteinou, Ioannis P. Androulakis, Steve E. Calvano, Stephen F. Lowry
2010 C conf
Effects of Triadimefon on the Metabolism of Cultured Hepatocytes.
BIBE
Vidya V. Iyer, Ioannis P. Androulakis, Charles M. Roth, Marianthi G. Ierapetritou
2010 J jnl
Importance of replication in analyzing time-series gene expression data: Corticosteroid dynamics and circadian patterns in rat liver.
BMC Bioinform.
Tung T. Nguyen, Richard R. Almon, Debra C. DuBois, William J. Jusko, Ioannis P. Androulakis
2010 C conf
Modeling Circadian Rhythms in Inflammation.
BIBE
Jeremy D. Scheff, Ioannis P. Androulakis, Steve E. Calvano, Stephen F. Lowry
2009 J jnl
A mixed-integer optimization framework for the synthesis and analysis of regulatory networks.
J. Glob. Optim.
Panagiota T. Foteinou, Eric Yang, Georges K. Saharidis, Marianthi G. Ierapetritou, Ioannis P. Androulakis
2009 J jnl
Assessing and selecting gene expression signals based upon the quality of the measured dynamics.
BMC Bioinform.
Eric Yang, Ioannis P. Androulakis
2009 — ch.
Asynchronous Distributed Optimization Algorithms.
Encyclopedia of Optimization
Ioannis P. Androulakis
2009 — ch.
Dynamic Programming: Average Cost Per Stage Problems.
Encyclopedia of Optimization
Ioannis P. Androulakis
2009 — ch.
Dynamic Programming: Discounted Problems.
Encyclopedia of Optimization
Ioannis P. Androulakis
2009 — ch.
Dynamic Programming: Infinite Horizon Problems, Overview.
Encyclopedia of Optimization
Ioannis P. Androulakis
2009 — ch.
Dynamic Programming: Inventory Control.
Encyclopedia of Optimization
Ioannis P. Androulakis
2009 — ch.
Dynamic Programming: Stochastic Shortest Path Problems.
Encyclopedia of Optimization
Ioannis P. Androulakis
2009 — ch.
Dynamic Programming: Undiscounted Problems.
Encyclopedia of Optimization
Ioannis P. Androulakis
2009 — ch.
MINLP: Branch and Bound Global Optimization Algorithm.
Encyclopedia of Optimization
Ioannis P. Androulakis
2009 — ch.
Mathematical Programming for Data Mining.
Encyclopedia of Optimization
Ioannis P. Androulakis, Wanpracha Art Chaovalitwongse
2009 J jnl
Networks, biology and systems engineering: A case study in inflammation.
Comput. Chem. Eng.
Panagiota T. Foteinou, Eric Yang, Ioannis P. Androulakis
2009 — ch.
Quadratic Integer Programming: Complexity and Equivalent Forms.
Encyclopedia of Optimization
Wanpracha Art Chaovalitwongse, Ioannis P. Androulakis, Panos M. Pardalos
2009 J jnl
Recent Advances in the Computational Discovery of Transcription Factor Binding Sites.
Algorithms
Tung T. Nguyen, Ioannis P. Androulakis
2009 — ch.
Selection of Maximally Informative Genes.
Encyclopedia of Optimization
Ioannis P. Androulakis, Eric Yang
2008 J jnl
A novel MINLP-based representation of the original complex model for predicting gasoline emissions.
Comput. Chem. Eng.
Kevin C. Furman, Ioannis P. Androulakis
2008 J jnl
Informative gene selection and design of regulatory networks using integer optimization.
Comput. Chem. Eng.
Eric Yang, Timothy Maguire, Martin L. Yarmush, Ioannis P. Androulakis
2007 J jnl
A novel non-overlapping bi-clustering algorithm for network generation using living cell array data.
Bioinform.
Eric Yang, Panagiota T. Foteinou, K. R. King, Martin L. Yarmush, Ioannis P. Androulakis
2007 J jnl
Bioinformatics analysis of the early inflammatory response in a rat thermal injury model.
BMC Bioinform.
Eric Yang, Timothy Maguire, Martin L. Yarmush, Francois Berthiaume, Ioannis P. Androulakis
2006 — conf
Assessing the Information Content of Short Time Series Expression Data.
EMBC
Eric H. Yang, Ioannis P. Androulakis
2006 J jnl
New approaches for representing, analyzing and visualizing complex kinetic transformations.
Comput. Chem. Eng.
Ioannis P. Androulakis
2005 J jnl
Selecting maximally informative genes.
Comput. Chem. Eng.
Ioannis P. Androulakis
2004 J jnl
"Store and retrieve" representations of dynamic systems motivated by studies in gas phase chemical kinetics.
Comput. Chem. Eng.
Ioannis P. Androulakis
1997 J jnl
Prediction of Oligopeptide Conformations via Deterministic Global Optimization.
J. Glob. Optim.
Ioannis P. Androulakis, Costas D. Maranas, Christodoulos A. Floudas
1995 — conf
A deterministic global optimization approach for the protein folding problem.
Global Minimization of Nonconvex Energy Functions: Molecular Conformation and Protein Folding
Costas D. Maranas, Ioannis P. Androulakis, Christodoulos A. Floudas
1995 J jnl
αBB: A global optimization method for general constrained nonconvex problems.
J. Glob. Optim.
Ioannis P. Androulakis, Costas D. Maranas, Christodoulos A. Floudas