Ioannis Kakkos

21 papers B 1C 1Journal 12Unranked 6
YearRankTypeTitle / Venue / Authors
2026 J jnl
Netw. Model. Anal. Health Informatics Bioinform.
Vasileios E. Katsigiannis, Ioannis Kakkos, Stavros Theofanis Miloulis, Ioannis A. Vezakis, Ourania Petropoulou, Joyce Rops, Naomi C. Buntsma, Edwin van der Pol, Dimitrios I. Fotiadis, George K. Matsopoulos
2025 J jnl
IEEE Trans. Cogn. Dev. Syst.
Kuijun Wu, Jingjia Yuan, Xianliang Ge, Ioannis Kakkos, Linze Qian, Sujie Wang, Yamei Yu, Chuantao Li, Yu Sun
2025 J jnl
IEEE J. Biomed. Health Informatics
Zhao Feng, Ioannis Kakkos, George K. Matsopoulos, Cuntai Guan, Yu Sun
2025 J jnl
IEEE J. Biomed. Health Informatics
Linze Qian, Sujie Wang, Ioannis Kakkos, Xiaoyu Li, Xinyi Xu, Mengru Xu, George K. Matsopoulos, Yi Sun, Jianhua Li, Chuantao Li, Yu Sun
2025 B conf
IEEE Big Data
Stavros Theofanis Miloulis, Ioannis Kakkos, Christina Kaliampakou, Ioannis Zorzos, Georgios N. Dimitrakopoulos, Ioannis A. Vezakis, Ioannis N. Kouris, Athanasios Anastasiou, George K. Matsopoulos
2025 J jnl
IEEE J. Biomed. Health Informatics
Konstantinos Georgas, Ioannis A. Vezakis, Ioannis Kakkos, Anastasia Natalia Douma, Evangelia Panourgias, Lia A. Moulopoulos, George K. Matsopoulos
2025 conf
ICECET
George G. Botis, Theodoros Panagiotis Vagenas, Nikolas Robotis, Ioannis Kakkos, Vassilis Koutoulidis, Lia Angela Moulopoulos, Dimitris Koutsouris, George K. Matsopoulos
2024 J jnl
Sensors
Olympia Giannakopoulou, Ioannis Kakkos, Georgios N. Dimitrakopoulos, Marilena Tarousi, Yu Sun, Anastasios Bezerianos, Dimitrios D. Koutsouris, George K. Matsopoulos
2023 J jnl
Future Internet
Vaia I. Kontopoulou, Athanasios D. Panagopoulos, Ioannis Kakkos, George K. Matsopoulos
2023 conf
EMBC
Spyridon V. Kallivokas, Lykouros C. Kontaxis, Ioannis Kakkos, Deligianni Deligianni, Vassilis Kostopoulos, Matsopoulos K. Matsopoulos
2023 J jnl
IEEE J. Biomed. Health Informatics
Peng Qi, Xiaobing Zhang, Ioannis Kakkos, Kuijun Wu, Sujie Wang, Jingjia Yuan, Lingyun Gao, George K. Matsopoulos, Yu Sun
2023 J jnl
NeuroImage
Zhao Feng, Sujie Wang, Linze Qian, Mengru Xu, Kuijun Wu, Ioannis Kakkos, Cuntai Guan, Yu Sun
2022 J jnl
IEEE J. Biomed. Health Informatics
Yi Sun, Zhe Zhang, Ioannis Kakkos, George K. Matsopoulos, Jingjia Yuan, John Suckling, Luoyi Xu, Shuxia Cao, Wenjuan Chen, Xingyue Hu, Tao Li, Kang Sim, Peng Qi, Yu Sun
2021 J jnl
IEEE J. Biomed. Health Informatics
Ioannis Kakkos, Georgios N. Dimitrakopoulos, Yi Sun, Jingjia Yuan, George K. Matsopoulos, Anastasios Bezerianos, Yu Sun
2020 conf
IEEE BigData
Aikaterini Karampasi, Ioannis Kakkos, Stavros Theofanis Miloulis, Ioannis Zorzos, Georgios N. Dimitrakopoulos, Kostakis Gkiatis, Panteleimon Asvestas, George K. Matsopoulos
2020 J jnl
Medical Biol. Eng. Comput.
Ioannis Kakkos, Errikos M. Ventouras, Pantelis A. Asvestas, Irene S. Karanasiou, George K. Matsopoulos
2020 conf
MobiHealth
Stavros Theofanis Miloulis, Ioannis Kakkos, Georgios N. Dimitrakopoulos, Yu Sun, Irene S. Karanasiou, Panteleimon Asvestas, Errikos-Chaim Ventouras, George K. Matsopoulos
2020 ch.
Advanced Computational Intelligence in Healthcare (7)
Ioannis Kakkos, Stavros Theofanis Miloulis, Kostakis Gkiatis, Georgios N. Dimitrakopoulos, George K. Matsopoulos
2017 conf
EMBC
Georgios N. Dimitrakopoulos, Ioannis Kakkos, Nitish V. Thakor, Anastasios Bezerianos, Yu Sun
2017 C conf
EANN
Georgios N. Dimitrakopoulos, Ioannis Kakkos, Aristidis G. Vrahatis, Kyriakos N. Sgarbas, Junhua Li, Yu Sun, Anastasios Bezerianos
2017 conf
NER
Jingwen Chai, Gong Chen, Pavithra Thangavel, Georgios N. Dimitrakopoulos, Ioannis Kakkos, Yu Sun, Zhongxiang Dai, Haoyong Yu, Nitish V. Thakor, Anastasios Bezerianos, Junhua Li
redb/extractors/extractor.py
← Index redb/extractors/extractor.py python
import hashlib
import inspect
from abc import ABCMeta, abstractmethod
from dataclasses import asdict
from functools import cached_property
from datetime import datetime, timezone
import math
from typing import Counter, List, Optional, Dict, Any, Tuple
from redb import settings
from redb.models.dataclasses import Hash
from .database_exporters import DatabaseExporter, ElasticsearchExporter, ClickHouseExporter, PrintExporter

class Extractor(metaclass=ABCMeta):
    def __init__(
        self,
        filepath: str,
        log: Any,
        exporters: Optional[List[DatabaseExporter]] = None,
        index_prefix: Optional[str] = None,
        source: Optional[str] = None,
        elastic_index: Optional[str] = None,
        known_benign: bool = False,
        known_malicious: bool = False,
        precomputed_hashes: Optional[Dict[str, str]] = None,
    ):
        self.log = log
        self.log.debug(f"Creating {self.__class__.__name__}")
        self.filepath = filepath
        self.source = source
        self.exporters = exporters or []
        self.index_prefix = index_prefix if index_prefix else settings.ELASTIC_BINARIES_COLLECTION
        self.elastic_index = self.index_prefix + (elastic_index if elastic_index else "")
        self.known_benign = known_benign
        self.known_malicious = known_malicious

        # Use precomputed hashes if provided (e.g., from machofile, pefile)
        # Otherwise compute them from binary
        if precomputed_hashes:
            self.md5 = precomputed_hashes.get('md5') or precomputed_hashes.get('MD5')
            self.sha1 = precomputed_hashes.get('sha1') or precomputed_hashes.get('SHA1')
            self.sha256 = precomputed_hashes.get('sha256') or precomputed_hashes.get('SHA256')
        else:
            self.md5 = hashlib.md5(self.binary).hexdigest()
            self.sha1 = hashlib.sha1(self.binary).hexdigest()
            self.sha256 = hashlib.sha256(self.binary).hexdigest()
        self.hash = Hash(self.md5, self.sha1, self.sha256)

    @cached_property
    def binary(self):
        with open(self.filepath, "rb") as f:
            data = f.read()
        return data

    @property
    @abstractmethod
    def tag(self):
        pass

    @abstractmethod
    def extract(self):
        """
        this method defines the extracted data
        """

    @staticmethod
    def process_binary_string(s):
        # Remove \x00 padding
        s = s.rstrip(b"\x00")

        # Check if there are any non-printable characters
        has_non_printable = any(byte < 32 or byte > 126 for byte in s)

        if not has_non_printable:
            # If all characters are printable, decode the string
            return s.decode()
        else:
            # If there are non-printable characters, represent them as \xDD
            return "".join(
                [
                    f"\\x{byte:02x}" if byte < 32 or byte > 126 else chr(byte)
                    for byte in s
                ]
            )

    @staticmethod
    def remove_non_utf8(binary_string):
        decoded = b""
        for i in range(len(binary_string)):
            try:
                # Try to decode each byte
                char = binary_string[i : i + 1].decode("utf-8")
                decoded += char.encode("utf-8")
            except UnicodeDecodeError:
                # Skip this byte if it can't be decoded
                continue
        return decoded

    def calculate_entropy(self, data):
        """Calculate the entropy of a chunk of data.
        Based on pefile.SectionStructure.entropy_H.
        """
        # self.log.debug(inspect.currentframe().f_code.co_name)
        if not data:
            return 0.0

        if type(data) == str:
            counts = Counter(data)
            frequencies = ((i / len(data)) for i in counts.values())
            return - sum(f * math.log(f, 2) for f in frequencies)
        else:
            occurences = Counter(bytearray(data))
            entropy = 0
            for x in occurences.values():
                p_x = float(x) / len(data)
                entropy -= p_x * math.log(p_x, 2)
            return entropy

    @abstractmethod
    def prepare_export_data(self, exporter_type: str) -> Tuple[List[Any], List[str], List[str]]:
        """
        Prepare data for specific export type
        Returns:
            Tuple containing:
            - data: List of values to insert
            - column_names: List of column names
            - column_type_names: List of column types
        """
        pass

    def export_data(self):
        """Export data to all configured exporters

        Returns:
            True: Export succeeded
            False: Export failed (actual error)
            None: No data to export (not an error, e.g., no overlay, no signature)
        """
        self.log.debug(inspect.currentframe().f_code.co_name)
        success = True
        extracted_data = self.extract()

        if extracted_data is None:
            self.log.debug("extract() returned None, skipping export")
            return None  # No data to export, not a failure
            
        for exporter in self.exporters:
            if isinstance(exporter, PrintExporter):
                # For PrintExporter, we pass the extracted data directly
                success &= exporter.export(extracted_data)
            else:
                # Get the data prepared for this specific exporter type
                export_data = self.prepare_export_data(exporter.__class__.__name__)
                
                if export_data is None:
                    self.log.debug(f"prepare_export_data returned None for {exporter.__class__.__name__}")
                    return False
                
                if isinstance(exporter, ElasticsearchExporter):
                    success &= exporter.export(
                        export_data,
                        index=self.elastic_index,
                        tag=self.tag(),
                        hashes=asdict(self.hash),
                        known_benign=self.known_benign,
                        known_malicious=self.known_malicious
                    )
                elif isinstance(exporter, ClickHouseExporter):
                    # For ClickHouse, we need to pass the table name and the prepared data
                    success &= exporter.export(
                        export_data,
                        table=self.get_clickhouse_table(),
                        # Add these parameters explicitly
                        column_names=export_data[1] if isinstance(export_data, tuple) else None,
                        column_type_names=export_data[2] if isinstance(export_data, tuple) else None
                    )
                
        return success

    @abstractmethod
    def get_clickhouse_table(self) -> str:
        """Return the appropriate ClickHouse table name"""
        pass
    # def export_to_elastic(self, list_of_dataclasses, tag=None):
    #     self.log.debug(inspect.currentframe().f_code.co_name)

    #     if not isinstance(list_of_dataclasses, list):
    #         self.log.error("Called export_to_elastic wrongly")

    #     now_t = datetime.now(timezone.utc).strftime("%Y-%m-%d %H:%M:%S")
    #     for dataclass_ in list_of_dataclasses:
    #         if not settings.ELASTIC_CLIENT.ping():
    #             self.log.error("[CONNECTION ERROR] ping to elastic failed")
            
    #         # Convert dataclass to dict and filter out None values
    #         document = {k: v for k, v in asdict(dataclass_).items() if v is not None}
            
    #         if tag:
    #             document["tag"] = [tag, self.tag()]
    #         else:
    #             document["tag"] = self.tag()
    #         hashes = asdict(self.hash)
    #         document |= hashes
    #         document["timestamp_utc"] = now_t
    #         # document["source"] = self.source
    #         document["known_benign"] = self.known_benign
    #         document["known_malicious"] = self.known_malicious

    #         if "_id" in document:
    #             tmp_id = document.pop("_id") + document["sha256"]
    #             _id = hashlib.sha256(tmp_id.encode()).hexdigest()
    #         else:
    #             _id = document["sha256"]

    #         # self.log.debug(f"[DEBUG] about to export {type(document)} {document}")
    #         try:
    #             doc_dump = json.dumps(document)
    #         except TypeError as e:
    #             self.log.error(
    #                 f"Failed export of document. " f"full document: {document}"
    #             )
    #             raise e

    #         # body={"doc": doc_dump,
    #         #       "doc_as_upsert": True  # Create the document if it doesn't exist
    #         # }

    #         # Check if the index exists, and create it if it doesn't
    #         # if not settings.ELASTIC_CLIENT.indices.exists(index=self.elastic_index):
    #         #     settings.ELASTIC_CLIENT.indices.create(index=self.elastic_index)
    #         # pprint(doc_dump) #DEBUG
    #         # print("[DEBUG] _id: " + _id)
    #         # print("[DEBUG] index: " + self.elastic_index)
    #         settings.ELASTIC_CLIENT.index(
    #             index=self.elastic_index, id=_id, document=doc_dump
    #         )