Ioannis Alagiannis

22 papers A 2B 1Journal 10Unranked 8
YearRankTypeTitle / Venue / Authors
2025 J jnl
Proc. ACM Manag. Data
Anas Ait Aomar, Karima Echihabi, Marco Arnaboldi, Ioannis Alagiannis, Damien Hilloulin, Manal Cherkaoui
2020 J jnl
VLDB J.
Matthaios Olma, Manos Karpathiotakis, Ioannis Alagiannis, Manos Athanassoulis, Anastasia Ailamaki
2017 J jnl
IEEE Trans. Big Data
Yongchao Tian, Ioannis Alagiannis, Erietta Liarou, Anastasia Ailamaki, Pietro Michiardi, Marko Vukolic
2017 J jnl
Proc. VLDB Endow.
Matthaios Olma, Manos Karpathiotakis, Ioannis Alagiannis, Manos Athanassoulis, Anastasia Ailamaki
2016 conf
ADMS/IMDM@VLDB
Adam Dziedzic, Manos Karpathiotakis, Ioannis Alagiannis, Raja Appuswamy, Anastasia Ailamaki
2016 J jnl
CoRR
Yongchao Tian, Ioannis Alagiannis, Erietta Liarou, Anastasia Ailamaki, Pietro Michiardi, Marko Vukolic
2016 J jnl
Proc. VLDB Endow.
Manos Karpathiotakis, Ioannis Alagiannis, Anastasia Ailamaki
2015
Ioannis Alagiannis
2015 A conf
CIDR
Manos Karpathiotakis, Ioannis Alagiannis, Thomas Heinis, Miguel Branco, Anastasia Ailamaki
2015 J jnl
Commun. ACM
Ioannis Alagiannis, Renata Borovica-Gajic, Miguel Branco, Stratos Idreos, Anastasia Ailamaki
2014 J jnl
Proc. VLDB Endow.
Manos Karpathiotakis, Miguel Branco, Ioannis Alagiannis, Anastasia Ailamaki
2014 conf
Data4U@VLDB
Yongchao Tian, Ioannis Alagiannis, Erietta Liarou, Anastasia Ailamaki, Pietro Michiardi, Marko Vukolic
2014 conf
SIGMOD Conference
Ioannis Alagiannis, Stratos Idreos, Anastasia Ailamaki
2013 conf
DBTest
Ioannis Alagiannis, Manos Athanassoulis, Anastasia Ailamaki
2012 conf
DBTest
Renata Borovica, Ioannis Alagiannis, Anastasia Ailamaki
2012 J jnl
Proc. VLDB Endow.
Ioannis Alagiannis, Renata Borovica, Miguel Branco, Stratos Idreos, Anastasia Ailamaki
2012 conf
SIGMOD Conference
Ioannis Alagiannis, Renata Borovica, Miguel Branco, Stratos Idreos, Anastasia Ailamaki
2011 J jnl
IEEE Data Eng. Bull.
Thomas Heinis, Miguel Branco, Ioannis Alagiannis, Renata Borovica, Farhan Tauheed, Anastasia Ailamaki
2011 A conf
CIDR
Stratos Idreos, Ioannis Alagiannis, Ryan Johnson, Anastasia Ailamaki
2010 conf
SIGMOD Conference
Ioannis Alagiannis, Debabrata Dash, Karl Schnaitter, Anastasia Ailamaki, Neoklis Polyzotis
2010 conf
ICDE Workshops
Debabrata Dash, Ioannis Alagiannis, Cristina Maier, Anastasia Ailamaki
2010 B conf
EDBT
Cristina Maier, Debabrata Dash, Ioannis Alagiannis, Anastasia Ailamaki, Thomas Heinis
redb/extractors/extractor.py
← Index redb/extractors/extractor.py python
import hashlib
import inspect
from abc import ABCMeta, abstractmethod
from dataclasses import asdict
from functools import cached_property
from datetime import datetime, timezone
import math
from typing import Counter, List, Optional, Dict, Any, Tuple
from redb import settings
from redb.models.dataclasses import Hash
from .database_exporters import DatabaseExporter, ElasticsearchExporter, ClickHouseExporter, PrintExporter

class Extractor(metaclass=ABCMeta):
    def __init__(
        self,
        filepath: str,
        log: Any,
        exporters: Optional[List[DatabaseExporter]] = None,
        index_prefix: Optional[str] = None,
        source: Optional[str] = None,
        elastic_index: Optional[str] = None,
        known_benign: bool = False,
        known_malicious: bool = False,
        precomputed_hashes: Optional[Dict[str, str]] = None,
    ):
        self.log = log
        self.log.debug(f"Creating {self.__class__.__name__}")
        self.filepath = filepath
        self.source = source
        self.exporters = exporters or []
        self.index_prefix = index_prefix if index_prefix else settings.ELASTIC_BINARIES_COLLECTION
        self.elastic_index = self.index_prefix + (elastic_index if elastic_index else "")
        self.known_benign = known_benign
        self.known_malicious = known_malicious

        # Use precomputed hashes if provided (e.g., from machofile, pefile)
        # Otherwise compute them from binary
        if precomputed_hashes:
            self.md5 = precomputed_hashes.get('md5') or precomputed_hashes.get('MD5')
            self.sha1 = precomputed_hashes.get('sha1') or precomputed_hashes.get('SHA1')
            self.sha256 = precomputed_hashes.get('sha256') or precomputed_hashes.get('SHA256')
        else:
            self.md5 = hashlib.md5(self.binary).hexdigest()
            self.sha1 = hashlib.sha1(self.binary).hexdigest()
            self.sha256 = hashlib.sha256(self.binary).hexdigest()
        self.hash = Hash(self.md5, self.sha1, self.sha256)

    @cached_property
    def binary(self):
        with open(self.filepath, "rb") as f:
            data = f.read()
        return data

    @property
    @abstractmethod
    def tag(self):
        pass

    @abstractmethod
    def extract(self):
        """
        this method defines the extracted data
        """

    @staticmethod
    def process_binary_string(s):
        # Remove \x00 padding
        s = s.rstrip(b"\x00")

        # Check if there are any non-printable characters
        has_non_printable = any(byte < 32 or byte > 126 for byte in s)

        if not has_non_printable:
            # If all characters are printable, decode the string
            return s.decode()
        else:
            # If there are non-printable characters, represent them as \xDD
            return "".join(
                [
                    f"\\x{byte:02x}" if byte < 32 or byte > 126 else chr(byte)
                    for byte in s
                ]
            )

    @staticmethod
    def remove_non_utf8(binary_string):
        decoded = b""
        for i in range(len(binary_string)):
            try:
                # Try to decode each byte
                char = binary_string[i : i + 1].decode("utf-8")
                decoded += char.encode("utf-8")
            except UnicodeDecodeError:
                # Skip this byte if it can't be decoded
                continue
        return decoded

    def calculate_entropy(self, data):
        """Calculate the entropy of a chunk of data.
        Based on pefile.SectionStructure.entropy_H.
        """
        # self.log.debug(inspect.currentframe().f_code.co_name)
        if not data:
            return 0.0

        if type(data) == str:
            counts = Counter(data)
            frequencies = ((i / len(data)) for i in counts.values())
            return - sum(f * math.log(f, 2) for f in frequencies)
        else:
            occurences = Counter(bytearray(data))
            entropy = 0
            for x in occurences.values():
                p_x = float(x) / len(data)
                entropy -= p_x * math.log(p_x, 2)
            return entropy

    @abstractmethod
    def prepare_export_data(self, exporter_type: str) -> Tuple[List[Any], List[str], List[str]]:
        """
        Prepare data for specific export type
        Returns:
            Tuple containing:
            - data: List of values to insert
            - column_names: List of column names
            - column_type_names: List of column types
        """
        pass

    def export_data(self):
        """Export data to all configured exporters

        Returns:
            True: Export succeeded
            False: Export failed (actual error)
            None: No data to export (not an error, e.g., no overlay, no signature)
        """
        self.log.debug(inspect.currentframe().f_code.co_name)
        success = True
        extracted_data = self.extract()

        if extracted_data is None:
            self.log.debug("extract() returned None, skipping export")
            return None  # No data to export, not a failure
            
        for exporter in self.exporters:
            if isinstance(exporter, PrintExporter):
                # For PrintExporter, we pass the extracted data directly
                success &= exporter.export(extracted_data)
            else:
                # Get the data prepared for this specific exporter type
                export_data = self.prepare_export_data(exporter.__class__.__name__)
                
                if export_data is None:
                    self.log.debug(f"prepare_export_data returned None for {exporter.__class__.__name__}")
                    return False
                
                if isinstance(exporter, ElasticsearchExporter):
                    success &= exporter.export(
                        export_data,
                        index=self.elastic_index,
                        tag=self.tag(),
                        hashes=asdict(self.hash),
                        known_benign=self.known_benign,
                        known_malicious=self.known_malicious
                    )
                elif isinstance(exporter, ClickHouseExporter):
                    # For ClickHouse, we need to pass the table name and the prepared data
                    success &= exporter.export(
                        export_data,
                        table=self.get_clickhouse_table(),
                        # Add these parameters explicitly
                        column_names=export_data[1] if isinstance(export_data, tuple) else None,
                        column_type_names=export_data[2] if isinstance(export_data, tuple) else None
                    )
                
        return success

    @abstractmethod
    def get_clickhouse_table(self) -> str:
        """Return the appropriate ClickHouse table name"""
        pass
    # def export_to_elastic(self, list_of_dataclasses, tag=None):
    #     self.log.debug(inspect.currentframe().f_code.co_name)

    #     if not isinstance(list_of_dataclasses, list):
    #         self.log.error("Called export_to_elastic wrongly")

    #     now_t = datetime.now(timezone.utc).strftime("%Y-%m-%d %H:%M:%S")
    #     for dataclass_ in list_of_dataclasses:
    #         if not settings.ELASTIC_CLIENT.ping():
    #             self.log.error("[CONNECTION ERROR] ping to elastic failed")
            
    #         # Convert dataclass to dict and filter out None values
    #         document = {k: v for k, v in asdict(dataclass_).items() if v is not None}
            
    #         if tag:
    #             document["tag"] = [tag, self.tag()]
    #         else:
    #             document["tag"] = self.tag()
    #         hashes = asdict(self.hash)
    #         document |= hashes
    #         document["timestamp_utc"] = now_t
    #         # document["source"] = self.source
    #         document["known_benign"] = self.known_benign
    #         document["known_malicious"] = self.known_malicious

    #         if "_id" in document:
    #             tmp_id = document.pop("_id") + document["sha256"]
    #             _id = hashlib.sha256(tmp_id.encode()).hexdigest()
    #         else:
    #             _id = document["sha256"]

    #         # self.log.debug(f"[DEBUG] about to export {type(document)} {document}")
    #         try:
    #             doc_dump = json.dumps(document)
    #         except TypeError as e:
    #             self.log.error(
    #                 f"Failed export of document. " f"full document: {document}"
    #             )
    #             raise e

    #         # body={"doc": doc_dump,
    #         #       "doc_as_upsert": True  # Create the document if it doesn't exist
    #         # }

    #         # Check if the index exists, and create it if it doesn't
    #         # if not settings.ELASTIC_CLIENT.indices.exists(index=self.elastic_index):
    #         #     settings.ELASTIC_CLIENT.indices.create(index=self.elastic_index)
    #         # pprint(doc_dump) #DEBUG
    #         # print("[DEBUG] _id: " + _id)
    #         # print("[DEBUG] index: " + self.elastic_index)
    #         settings.ELASTIC_CLIENT.index(
    #             index=self.elastic_index, id=_id, document=doc_dump
    #         )