Inge Jonassen

47 papers A 2C 1Journal 37Unranked 5
YearRankTypeTitle / Venue / Authors
2021 J jnl
SeeCiTe: a method to assess CNV calls from SNP arrays using trio data.
Bioinform.
Ksenia Lavrichenko, Øyvind Helgeland, Pål R. Njølstad, Inge Jonassen, Stefan Johansson
2020 J jnl
RASflow: an RNA-Seq analysis workflow with Snakemake.
BMC Bioinform.
Xiaokang Zhang, Inge Jonassen
2020 J jnl
Reconstructing ribosomal genes from large scale total RNA meta-transcriptomic data.
Bioinform.
Yaxin Xue, Anders Lanzén, Inge Jonassen
2019 — conf
A Comparative Analysis of Feature Selection Methods for Biomarker Discovery in Study of Toxicant-Treated Atlantic Cod (Gadus Morhua) Liver.
NAIS
Xiaokang Zhang, Inge Jonassen
2019 J jnl
A Comparative Analysis of Feature Selection Methods for Biomarker Discovery in Study of Toxicant-treated Atlantic Cod (Gadus morhua) Liver.
CoRR
Xiaokang Zhang, Inge Jonassen
2019 — conf
An Ensemble Feature Selection Framework Integrating Stability.
BIBM
Xiaokang Zhang, Inge Jonassen
2018 J jnl
Deblender: a semi-/unsupervised multi-operational computational method for complete deconvolution of expression data from heterogeneous samples.
BMC Bioinform.
Konstantina Dimitrakopoulou, Elisabeth Wik, Lars A. Akslen, Inge Jonassen
2018 J jnl
EFSIS: Ensemble Feature Selection Integrating Stability.
CoRR
Xiaokang Zhang, Inge Jonassen
2018 J jnl
Norwegian e-Infrastructure for Life Sciences (NeLS).
F1000Research
Kidane M. Tekle, Sveinung Gundersen, Kjetil Klepper, Lars Ailo Bongo, Inge Alexander Raknes, Xiaxi Li, Wei Zhang, Christian Andreetta, Teshome Dagne Mulugeta, Matús Kalas, Morten B. Rye, Erik Hjerde, Jeevan Karloss Antony Samy, Ghislain Fornous, Abdulrahman Azab, Dag Inge Våge, Eivind Hovig, Nils Peder Willassen, Finn Drabløs, Ståle Nygård, Kjell Petersen, Inge Jonassen
2016 J jnl
RareVariantVis: new tool for visualization of causative variants in rare monogenic disorders using whole genome sequencing data.
Bioinform.
Tomasz Stokowy, Mateusz Garbulowski, Torunn Fiskerstrand, Rita Holdhus, Kornel Labun, Pawel Sztromwasser, Christian Gilissen, Alexander Hoischen, Gunnar Houge, Kjell Petersen, Inge Jonassen, Vidar M. Steen
2013 J jnl
EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats.
Bioinform.
Jon C. Ison, Matús Kalas, Inge Jonassen, Dan M. Bolser, Mahmut Uludag, Hamish McWilliam, James Malone, Rodrigo Lopez, Steve Pettifer, Peter M. Rice
2013 J jnl
Filtering duplicate reads from 454 pyrosequencing data.
Bioinform.
Susanne Balzer, Ketil Malde, Markus A. Grohme, Inge Jonassen
2011 J jnl
Characteristics of 454 pyrosequencing data - enabling realistic simulation with flowsim.
Bioinform.
Susanne Balzer, Ketil Malde, Anders Lanzén, Animesh Sharma, Inge Jonassen
2011 J jnl
Exploring the limits of fold discrimination by structural alignment: A large scale benchmark using decoys of known fold.
Comput. Biol. Chem.
Siv Midtun Hollup, Michael I. Sadowski, Inge Jonassen, William R. Taylor
2011 J jnl
Systematic exploration of error sources in pyrosequencing flowgram data.
Bioinform.
Susanne Balzer, Ketil Malde, Inge Jonassen
2010 J jnl
BioXSD: the common data-exchange format for everyday bioinformatics web services.
Bioinform.
Matús Kalas, Pål Puntervoll, Alexandre Joseph, Edita Bartaseviciute, Armin Töpfer, Prabakar Venkataraman, Steve Pettifer, Jan Christian Bryne, Jon C. Ison, Christophe Blanchet, Kristoffer Rapacki, Inge Jonassen
2010 J jnl
Characteristics of 454 pyrosequencing data - enabling realistic simulation with flowsim.
Bioinform.
Susanne Balzer, Ketil Malde, Anders Lanzén, Animesh Sharma, Inge Jonassen
2010 J jnl
The EMBRACE web service collection.
Nucleic Acids Res.
Steve Pettifer, Jon C. Ison, Matús Kalas, Dave Thorne, Philip McDermott, Inge Jonassen, Ali Liaquat, José María Fernández, José Manuel Rodriguez, David G. Pisano, Christophe Blanchet, Mahmut Uludag, Peter M. Rice, Edita Bartaseviciute, Kristoffer Rapacki, Maarten L. Hekkelman, Olivier Sand, Heinz Stockinger, Andrew B. Clegg, Erik Bongcam-Rudloff, Jean Salzemann, Vincent Breton, Teresa K. Attwood, Graham Cameron, Gert Vriend
2008 J jnl
The BREW workshop series: a stimulating experience in PhD education.
Briefings Bioinform.
Robert Giegerich, Alvis Brazma, Inge Jonassen, Esko Ukkonen, Martin Vingron
2007 J jnl
TMM@: a web application for the analysis of transmembrane helix mobility.
BMC Bioinform.
Lars Skjaerven, Inge Jonassen, Nathalie Reuter
2006 J jnl
Protein model refinement using structural fragment tessellation.
Comput. Biol. Chem.
Inge Jonassen, Daniel Klose, William R. Taylor
2006 J jnl
RBR: library-less repeat detection for ESTs.
Bioinform.
Ketil Malde, Korbinian Schneeberger, Eivind Coward, Inge Jonassen
2005 J jnl
A graph based algorithm for generating EST consensus sequences.
Bioinform.
Ketil Malde, Eivind Coward, Inge Jonassen
2005 J jnl
Guest Editorial: WABI Special Section Part II.
IEEE ACM Trans. Comput. Biol. Bioinform.
Junhyong Kim, Inge Jonassen
2005 — ch.
Integrative Models for the Prediction and Understanding of Protein Structure Patterns.
Data Analysis and Visualization in Genomics and Proteomics
Inge Jonassen
2004 C ed.
Algorithms in Bioinformatics, 4th International Workshop, WABI 2004, Bergen, Norway, September 17-21, 2004, Proceedings
WABI
Inge Jonassen, Junhyong Kim
2004 J jnl
Guest Editorial: WABI Special Section Part 1.
IEEE ACM Trans. Comput. Biol. Bioinform.
Junhyong Kim, Inge Jonassen
2004 — book
Protein bioinformatics - an algorithmic approach to sequence and structure analysis.
Ingvar Eidhammer, Inge Jonassen, William R. Taylor
2004 J jnl
XHM: A system for detection of potential cross hybridizations in DNA microarrays.
BMC Bioinform.
Kristian Flikka, Fekadu Yadetie, Astrid Lægreid, Inge Jonassen
2003 J jnl
Fast Sequence Clustering Using A Suffix Array Algorithm.
Bioinform.
Ketil Malde, Eivind Coward, Inge Jonassen
2003 J jnl
Tumor classification and marker gene prediction by feature selection and fuzzy c-means clustering using microarray data.
BMC Bioinform.
Junbai Wang, Trond Hellem Bø, Inge Jonassen, Ola Myklebost, Eivind Hovig
2002 J jnl
A fast top-down method for constructing reliable radiation hybrid frameworks.
Bioinform.
Trond Hellem Bø, Inge Jonassen, Ingvar Eidhammer, Carsten Helgesen
2002 J jnl
Association of nucleotide patterns with gene function classes: application to human 3' untranslated sequences.
Bioinform.
Darrell Conklin, Inge Jonassen, Rein Aasland, William R. Taylor
2002 J jnl
Structure motif discovery and mining the PDB.
Bioinform.
Inge Jonassen, Ingvar Eidhammer, Darrell Conklin, William R. Taylor
2001 J jnl
A Constraint Based Structure Description Language for Biosequences.
Constraints An Int. J.
Ingvar Eidhammer, Inge Jonassen, Svenn Helge Grindhaug, David R. Gilbert, Madu Ratnayake
2001 J jnl
J-Express: exploring gene expression data using Java.
Bioinform.
B. Dysvik, Inge Jonassen
2001 J jnl
The InterPro database, an integrated documentation resource for protein families, domains and functional sites.
Nucleic Acids Res.
Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, Ewan Birney, Margaret Biswas, Philipp Bucher, Lorenzo Cerutti, Florence Corpet, Michael D. R. Croning, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Henning Hermjakob, Nicolas Hulo, Inge Jonassen, Daniel Kahn, Alexander Kanapin, Youla Karavidopoulou, Rodrigo Lopez, Beate Marx, Nicola J. Mulder, Thomas M. Oinn, Marco Pagni, Florence Servant, Christian J. A. Sigrist, Evgeni M. Zdobnov
2000 J jnl
InterPro-an integrated documentation resource for protein families, domains and functional sites.
Bioinform.
Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, Ewan Birney, Margaret Biswas, Philipp Bucher, Lorenzo Cerutti, Florence Corpet, Michael D. R. Croning, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Henning Hermjakob, Nicolas Hulo, Inge Jonassen, Daniel Kahn, Alexander Kanapin, Youla Karavidopoulou, Rodrigo Lopez, Beate Marx, Nicola J. Mulder, Thomas M. Oinn, Marco Pagni, Florence Servant, Christian J. A. Sigrist, Evgeni M. Zdobnov
2000 A conf
Mining for Putative Regulatory Elements in the Yeast Genome Using Gene Expression Data.
ISMB
Jaak Vilo, Alvis Brazma, Inge Jonassen, Alan J. Robinson, Esko Ukkonen
2000 J jnl
Structure Comparison and Structure Patterns.
J. Comput. Biol.
Ingvar Eidhammer, Inge Jonassen, William R. Taylor
2000 — conf
Structure Motif Discovery and Mining the PDB.
German Conference on Bioinformatics
Inge Jonassen, Ingvar Eidhammer, Darrell Conklin, William R. Taylor
1998 J jnl
Approaches to the Automatic Discovery of Patterns in Biosequences.
J. Comput. Biol.
Alvis Brazma, Inge Jonassen, Ingvar Eidhammer, David R. Gilbert
1998 — conf
Pattern Discovery in Biosequences.
ICGI
Alvis Brazma, Inge Jonassen, Jaak Vilo, Esko Ukkonen
1998 — conf
Predicting gene regulatory elements from their expression data in the complete yeast genome.
German Conference on Bioinformatics
Alvis Brazma, Inge Jonassen, Jaak Vilo, Esko Ukkonen
1997 J jnl
Efficient discovery of conserved patterns using a pattern graph.
Comput. Appl. Biosci.
Inge Jonassen
1996 A conf
Discovering Patterns and Subfamilies in Biosequences.
ISMB
Alvis Brazma, Inge Jonassen, Esko Ukkonen, Jaak Vilo
1991 J jnl
A comparison of splitting methods for the identification of corner-points.
Pattern Recognit. Lett.
Rune Espelid, Inge Jonassen