Indra Neil Sarkar

88 papers Misc 41Journal 40Unranked 6

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Learning health system linchpins: information exchange and a common data model. J. Am. Medical Informatics Assoc. Aaron S. Eisman, Elizabeth S. Chen, Wen-Chih Wu, Karen Crowley, Dilum P. Aluthge, Katherine A. Brown, Indra Neil Sarkar
2025	J	`jnl`	The health data utility and the resurgence of health information exchanges as a national resource. J. Am. Medical Informatics Assoc. Anjum Khurshid, Indra Neil Sarkar
2022	Misc	`conf`	An Unsupervised Cluster Analysis of Post-COVID-19 Mental Health Outcomes and Associated Comorbidities. AMIA Katherine A. Brown, Indra Neil Sarkar, Karen Crowley, Dilum P. Aluthge, Elizabeth S. Chen
2022	J	`jnl`	GenBank as a source to monitor and analyze Host-Microbiome data. Bioinform. Vivek Ramanan, Shanti Mechery, Indra Neil Sarkar
2022	J	`jnl`	Synergies between centralized and federated approaches to data quality: a report from the national COVID cohort collaborative. J. Am. Medical Informatics Assoc. Emily R. Pfaff, Andrew T. Girvin, Davera Gabriel, Kristin Kostka, Michele Morris, Matvey B. Palchuk, Harold P. Lehmann, Benjamin R. C. Amor, Mark Bissell, Katie R. Bradwell, Sigfried Gold, Stephanie S. Hong, Johanna Loomba, Amin Manna, Julie A. McMurry, Emily Niehaus, Nabeel Qureshi, Anita Walden, Xiaohan Tanner Zhang, Richard L. Zhu, Richard A. Moffitt, Christopher G. Chute, William G. Adams, Shaymaa Al-Shukri, Alfred Anzalone, Ahmad Baghal, Tellen D. Bennett, Elmer V. Bernstam, Mark M. Bissell, Brian Bush, Thomas R. Campion Jr., Victor Castro, Jack Chang, Deepa D. Chaudhari, Wenjin Chen, San Chu, James J. Cimino, Keith A. Crandall, Mark Crooks, Sara J. Deakyne Davies, John Dipalazzo, David A. Dorr, Dan Eckrich, Sarah E. Eltinge, Daniel G. Fort, George Golovko, Snehil Gupta, Melissa A. Haendel, Janos G. Hajagos, David A. Hanauer, Brett M. Harnett, Ronald Horswell, Nancy Huang, Steven G. Johnson, Michael Kahn, Kamil Khanipov, Curtis Kieler, Katherine Ruiz De Luzuriaga, Sarah E. Maidlow, Ashley Martinez, Jomol Mathew, James C. McClay, Gabriel McMahan, Brian Melancon, Stéphane M. Meystre, Lucio Miele, Hiroki Morizono, Ray Pablo, Lav P. Patel, Jimmy Phuong, Daniel J. Popham, Claudia P. Pulgarin, Carlos Santos, Indra Neil Sarkar, Nancy Sazo, Soko Setoguchi, Selvin Soby, Sirisha Surampalli, Christine Suver, Uma Maheswara Reddy Vangala, Shyam Visweswaran, James von Oehsen, Kellie M. Walters, Laura K. Wiley, David A. Williams, Adrian H. Zai
2021	Misc	`conf`	Clinical Note Section Detection Using a Hidden Markov Model of Unified Medical Language System Semantic Types. AMIA Aaron S. Eisman, Katherine A. Brown, Elizabeth S. Chen, Indra Neil Sarkar
2021	Misc	`conf`	Public Health Informatics in a Global Pandemic: In the COVID response trenches. AMIA Jessica D. Tenenbaum, Theresa Cullen, Indra Neil Sarkar, Philip R. O. Payne, Brian E. Dixon
2020	Misc	`conf`	A Phylogenetic Approach to Analyze the Conservativeness of BRCA1 and BRCA2 Mutations. AMIA Jiaying Lai, Indra Neil Sarkar
2020	Misc	`conf`	Coding Free-Text Chief Complaints from a Health Information Exchange: A Preliminary Study. AMIA Sotiris Karagounis, Indra Neil Sarkar, Elizabeth S. Chen
2020	Misc	`conf`	Extracting Angina Symptoms from Clinical Notes Using Pre-Trained Transformer Architectures. AMIA Aaron S. Eisman, Nishant R. Shah, Carsten Eickhoff, George Zerveas, Elizabeth S. Chen, Wen-Chih Wu, Indra Neil Sarkar
2020	J	`jnl`	Extracting Angina Symptoms from Clinical Notes Using Pre-Trained Transformer Architectures. CoRR Aaron S. Eisman, Nishant R. Shah, Carsten Eickhoff, George Zerveas, Elizabeth S. Chen, Wen-Chih Wu, Indra Neil Sarkar
2020	Misc	`conf`	Mental Health Comorbidity Analysis in Pediatric Patients with Autism Spectrum Disorder Using Rhode Island Medical Claims Data. AMIA Katherine A. Brown, Indra Neil Sarkar, Elizabeth S. Chen
2019	—	`conf`	Identifying Phytochemicals from Biomedical Literature Utilizing Semantic Knowledge Sources. MedInfo Indra Neil Sarkar, Wayne Law, Michael J. Balick
2019	J	`jnl`	Machine learning approach to literature mining for the genetics of complex diseases. Database J. Biol. Databases Curation Jessica Schuster, Michael Superdock, Anthony Agudelo, Paul Stey, James Padbury, Indra Neil Sarkar, Alper Uzun
2019	—	`conf`	Racial Representation Disparity of Population-Level Genomic Sequencing Efforts. MedInfo Isaac E. Kim Jr., Indra Neil Sarkar
2019	J	`jnl`	Solr-Plant: efficient extraction of plant names from text. BMC Bioinform. Vivekanand Sharma, Maria Isabel Restrepo, Indra Neil Sarkar
2019	—	`conf`	Web-Based Visualization of MeSH-Based PubMed/MEDLINE Statistics. MedInfo Maria I. Restrepo, Mary C. McGrath, Indra Neil Sarkar, Elizabeth S. Chen
2018	Misc	`conf`	Identifying natural health product and dietary supplement information within adverse event reporting systems. PSB Vivekanand Sharma, Indra Neil Sarkar
2018	Misc	`conf`	Predicting Thromboembolism after Vaginal and Laparoscopic Hysterectomy in Gynecologic Oncology Patients using Machine Learning. AMIA Justin E. Kleiner, Michael Cohen, Dilum P. Aluthge, Ishan Sinha, Indra Neil Sarkar, Elizabeth S. Chen, Dario R. Roque
2018	Misc	`conf`	Predicting the Costs of Medical Liability Using Artificial Neural Networks. AMIA Jonathan T. Vu, Dilum P. Aluthge, Ishan Sinha, Elizabeth S. Chen, Indra Neil Sarkar
2018	Misc	`conf`	Using Demographic Factors and Comorbidities to Develop a Predictive Model for ICU Mortality in Patients with Acute Exacerbation COPD. AMIA Sukrit S. Jain, Indra Neil Sarkar, Paul Stey, Rajsavi S. Anand, Dustin R. Biron, Elizabeth S. Chen
2017	Misc	`conf`	An Automated System for Categorizing Transthoracic Echocardiography Indications According to the Echocardiography Appropriate Use Criteria. AMIA Aaron S. Eisman, Rory B. Weiner, Elizabeth S. Chen, Paul Stey, Rishi K. Wadhera, Aaron P. Kithcart, Indra Neil Sarkar
2017	Misc	`conf`	Assessing Data Quality within Health Information Exchanges: A Case Study for Supporting Emergency Department Research. AMIA Margaret M. Thorsen, Indra Neil Sarkar, Elizabeth S. Chen, Elaine Fontaine, Gregory Walker, Megan L. Ranney
2017	Misc	`conf`	Comorbidity Miner: An Open Source Interactive Tool for Mining Disparate Electronic Health Data Sources. AMIA Ashley S. Lee, Indra Neil Sarkar, Genevieve B. Melton, Yuanqing Liu, Vivekanand Sharma, Elizabeth S. Chen
2017	J	`jnl`	Crossing the health IT chasm: considerations and policy recommendations to overcome current challenges and enable value-based care. J. Am. Medical Informatics Assoc. Julia Adler-Milstein, Peter J. Embí, Blackford Middleton, Indra Neil Sarkar, Jeff Smith
2017	Misc	`conf`	Harnessing Biomedical Natural Language Processing Tools to Identify Medicinal Plant Knowledge from Historical Texts. AMIA Vivekanand Sharma, Wayne Law, Michael J. Balick, Indra Neil Sarkar
2016	J	`jnl`	Developing new pathways into the biomedical informatics field: the AMIA High School Scholars Program. J. Am. Medical Informatics Assoc. Kim M. Unertl, John T. Finnell, Indra Neil Sarkar
2016	J	`jnl`	Harnessing next-generation informatics for personalizing medicine: a report from AMIA's 2014 Health Policy Invitational Meeting. J. Am. Medical Informatics Assoc. Laura K. Wiley, Peter Tarczy-Hornoch, Joshua C. Denny, Robert R. Freimuth, Casey L. Overby, Nigam Shah, Ross D. Martin, Indra Neil Sarkar
2016	—	`conf`	How to Prepare a Nursing Informatics Conference Submission. Nursing Informatics Kaija Saranto, Elizabeth M. Borycki, Indra Neil Sarkar
2016	—	`conf`	Identifying Family History and Substance Use Associations for Adult Epilepsy from the Electronic Health Record. CRI Yan Wang, Elizabeth S. Chen, Ilo Leppik, Serguei V. S. Pakhomov, Indra Neil Sarkar, Genevieve B. Melton
2016	Misc	`conf`	Mining and Visualizing Sequential Patterns in the Electronic Health Record: A Case Study for Asthma With and Without Mental Disorders. AMIA Elizabeth S. Chen, Genevieve B. Melton, Mark Howison, Erik Knoll, Ashley S. Lee, Indra Neil Sarkar
2016	Misc	`conf`	New Pathways Into Biomedical Informatics: Educational Outreach Programs for High School Students. AMIA David Boone, John T. Finnell, Kim M. Unertl, Indra Neil Sarkar
2016	Misc	`conf`	Report from the ED-WG Frontline: Biomedical and Health Informatics Baccalaureate (BHIB) Course. AMIA Saif S. Khairat, Glynda Doyle, Indra Neil Sarkar, Jeff Williamson
2015	J	`jnl`	Adapting simultaneous analysis phylogenomic techniques to study complex disease gene relationships. J. Biomed. Informatics Joseph D. Romano, William G. Tharp, Indra Neil Sarkar
2015	Misc	`conf`	Automated Extraction of Substance Use Information from Clinical Texts. AMIA Yan Wang, Elizabeth S. Chen, Serguei V. S. Pakhomov, Elliot G. Arsoniadis, Elizabeth W. Carter, Elizabeth Lindemann, Indra Neil Sarkar, Genevieve B. Melton
2015	—	`ed.`	MEDINFO 2015: eHealth-enabled Health - Proceedings of the 15th World Congress on Health and Biomedical Informatics, São Paulo, Brazil, 19-23 August 2015 MedInfo Indra Neil Sarkar, Andrew Georgiou, Paulo Mazzoncini de Azevedo Marques
2015	Misc	`conf`	Mining and Visualizing Family History Associations in the Electronic Health Record: A Case Study for Pediatric Asthma. AMIA Elizabeth S. Chen, Genevieve B. Melton, Richard Wasserman, Paul Rosenau, Diantha B. Howard, Indra Neil Sarkar
2015	J	`jnl`	Multi-source development of an integrated model for family health history. J. Am. Medical Informatics Assoc. Elizabeth S. Chen, Elizabeth W. Carter, Tamara Winden, Indra Neil Sarkar, Yan Wang, Genevieve B. Melton
2015	Misc	`conf`	Representation of Drug Use in Biomedical Standards, Clinical Text, and Research Measures. AMIA Elizabeth W. Carter, Indra Neil Sarkar, Genevieve B. Melton, Elizabeth S. Chen
2015	Misc	`conf`	Surveying Problem List Perceptions and Use in the Electronic Health Record. AMIA Darlene Peterson, Timothy E. Burdick, Joshua Cohen, Indra Neil Sarkar, Julie Lin, Dennis Plante, Elizabeth S. Chen
2014	J	`jnl`	Drug repurposing: mining protozoan proteomes for targets of known bioactive compounds. J. Am. Medical Informatics Assoc. Adam Sateriale, Kovi Bessoff, Indra Neil Sarkar, Christopher D. Huston
2014	Misc	`conf`	Examining the Use, Contents, and Quality of Free-Text Tobacco Use Documentation in the Electronic Health Record. AMIA Elizabeth S. Chen, Elizabeth W. Carter, Indra Neil Sarkar, Tamara Winden, Genevieve B. Melton
2014	Misc	`conf`	PubMedMiner: Mining and Visualizing MeSH-based Associations in PubMed. AMIA Yucan Zhang, Indra Neil Sarkar, Elizabeth S. Chen
2014	J	`jnl`	Structural network analysis of biological networks for assessment of potential disease model organisms. J. Biomed. Informatics Ahmed Ragab Nabhan, Indra Neil Sarkar
2014	Misc	`conf`	Using Arden Syntax to Identify Registry-Eligible Very Low Birth Weight Neonates from the Electronic Health Record. AMIA Indra Neil Sarkar, Elizabeth S. Chen, Paul Rosenau, Matthew B. Storer, Beth Anderson, Jeffrey D. Horbar
2013	J	`jnl`	Bioinformatics opportunities for identification and study of medicinal plants. Briefings Bioinform. Vivekanand Sharma, Indra Neil Sarkar
2013	Misc	`conf`	Development of a Comprehensive Family Health History Information Model. AMIA Elizabeth S. Chen, Elizabeth W. Carter, Tamara Winden, Indra Neil Sarkar, Genevieve B. Melton
2013	J	`jnl`	Leveraging concept-based approaches to identify potential phyto-therapies. J. Biomed. Informatics Vivekanand Sharma, Indra Neil Sarkar
2013	J	`jnl`	People, organizational, and leadership factors impacting informatics support for clinical and translational research. BMC Medical Informatics Decis. Mak. Philip R. O. Payne, Taylor R. Pressler, Indra Neil Sarkar, Yves A. Lussier
2013	J	`jnl`	Research and applications: Leveraging biodiversity knowledge for potential phyto-therapeutic applications. J. Am. Medical Informatics Assoc. Vivekanand Sharma, Indra Neil Sarkar
2013	Misc	`conf`	Resolving and Standardizing Providers within Administrative Data. AMIA Indra Neil Sarkar, Elizabeth S. Chen, Steven J. Kappel
2012	J	`jnl`	A vector space model approach to identify genetically related diseases. J. Am. Medical Informatics Assoc. Indra Neil Sarkar
2012	Misc	`conf`	Characterizing the Use and Contents of Free-Text Family History Comments in the Electronic Health Record. AMIA Elizabeth S. Chen, Genevieve B. Melton, Timothy E. Burdick, Paul Rosenau, Indra Neil Sarkar
2012	Misc	`conf`	Determining Compound Comorbidities for Heart Failure from Hospital Discharge Data. AMIA Indra Neil Sarkar, Elizabeth S. Chen
2012	Misc	`conf`	Mining Disease Fingerprints From Within Genetic Pathways. AMIA Ahmed Ragab Nabhan, Indra Neil Sarkar
2012	Misc	`conf`	Social and Behavioral History Information in Public Health Datasets. AMIA Genevieve B. Melton, Sharad Manaktala, Indra Neil Sarkar, Elizabeth S. Chen
2012	J	`jnl`	The impact of taxon sampling on phylogenetic inference: a review of two decades of controversy. Briefings Bioinform. Ahmed Ragab Nabhan, Indra Neil Sarkar
2012	J	`jnl`	Translating standards into practice: Experiences and lessons learned in biomedicine and health care. J. Biomed. Informatics Elizabeth S. Chen, Genevieve B. Melton, Indra Neil Sarkar
2011	J	`jnl`	Enhancing phylogeography by improving geographical information from GenBank. J. Biomed. Informatics Matthew Scotch, Indra Neil Sarkar, Changjiang Mei, Robert Leaman, Kei-Hoi Cheung, Pierina Ortiz, Ashutosh Singraur, Graciela Gonzalez
2011	J	`jnl`	Selected Papers from the 2011 Summit on Translational Bioinformatics. J. Biomed. Informatics Indra Neil Sarkar
2011	J	`jnl`	The joint summits on translational science: Crossing the translational chasm. J. Biomed. Informatics Indra Neil Sarkar, Philip R. O. Payne
2011	J	`jnl`	Translational bioinformatics: linking knowledge across biological and clinical realms. J. Am. Medical Informatics Assoc. Indra Neil Sarkar, Atul J. Butte, Yves A. Lussier, Peter Tarczy-Hornoch, Lucila Ohno-Machado
2010	J	`jnl`	Editorial: Bioinformatics education in the 21st century. Briefings Bioinform. Indra Neil Sarkar
2010	J	`jnl`	Evaluation of family history information within clinical documents and adequacy of HL7 clinical statement and clinical genomics family history models for its representation: a case report. J. Am. Medical Informatics Assoc. Genevieve B. Melton, Nandhini Raman, Elizabeth S. Chen, Indra Neil Sarkar, Serguei V. S. Pakhomov, Robert D. Madoff
2010	J	`jnl`	MeSHing molecular sequences and clinical trials: A feasibility study. J. Biomed. Informatics Elizabeth S. Chen, Indra Neil Sarkar
2009	J	`jnl`	Biodiversity Informatics: the emergence of a field. BMC Bioinform. Indra Neil Sarkar
2009	Misc	`conf`	LigerCat: Using "MeSH Clouds" from Journal, Article, or Gene Citations to Facilitate the Identification of Relevant Biomedical Literature. AMIA Indra Neil Sarkar, Ryan Schenk, Holly Miller, Catherine N. Norton
2009	J	`jnl`	Selected proceedings of the 2009 Summit on Translational Bioinformatics. BMC Bioinform. Yves A. Lussier, Indra Neil Sarkar
2009	J	`jnl`	Selected proceedings of the First Summit on Translational Bioinformatics 2008. BMC Bioinform. Atul J. Butte, Indra Neil Sarkar, Marco Ramoni, Yves A. Lussier, Olga G. Troyanskaya
2008	J	`jnl`	Automated simultaneous analysis phylogenetics (ASAP): an enabling tool for phlyogenomics. BMC Bioinform. Indra Neil Sarkar, Mary G. Egan, Gloria M. Coruzzi, Ernest K. Lee, Robert DeSalle
2007	J	`jnl`	Biodiversity informatics: organizing and linking information across the spectrum of life. Briefings Bioinform. Indra Neil Sarkar
2007	Misc	`conf`	Session Introduction. Pacific Symposium on Biocomputing Indra Neil Sarkar
2007	J	`jnl`	uBioRSS: Tracking taxonomic literature using RSS. Bioinform. Patrick R. Leary, David P. Remsen, Catherine N. Norton, David J. Patterson, Indra Neil Sarkar
2006	Misc	`conf`	Literature Based Discovery of Gene Clusters Using Phylogenetic Methods. AMIA Indra Neil Sarkar, Abha Agrawal
2006	J	`jnl`	OrthologID: automation of genome-scale ortholog identification within a parsimony framework. Bioinform. Joanna C. Chiu, Ernest K. Lee, Mary G. Egan, Indra Neil Sarkar, Gloria M. Coruzzi, Robert DeSalle
2006	J	`jnl`	Phylogenetics in the modern era. J. Biomed. Informatics Indra Neil Sarkar
2006	Misc	`conf`	zMedline: A Medline-Based Content Management System. AMIA Chif N. Umejei, Indra Neil Sarkar
2005	Misc	`conf`	GenesTrace: Phenomic Knowledge Discovery via Structured Terminology. Pacific Symposium on Biocomputing Michael N. Cantor, Indra Neil Sarkar, Olivier Bodenreider, Yves A. Lussier
2005	J	`jnl`	mILD: a tool for constructing and analyzing matrices of pairwise phylogenetic character incongruence tests. Bioinform. Paul J. Planet, Indra Neil Sarkar
2004	J	`jnl`	ORFcurator: molecular curation of genes and gene clusters in prokaryotic organisms. Bioinform. Jeffrey A. Rosenfeld, Indra Neil Sarkar, Paul J. Planet, David H. Figurski, Robert DeSalle
2003	—	`conf`	An Evaluation of Hybrid Methods for Matching Biomedical Terminologies: Mapping the Gene Ontology to the UMLS MIE Michael N. Cantor, Indra Neil Sarkar, R. Gelman, Frank W. Hartel, Olivier Bodenreider, Yves A. Lussier
2003	Misc	`conf`	Linking Biomedical Language Information and Knowledge Resources in the 21st Century: GO and UMLS. Pacific Symposium on Biocomputing Indra Neil Sarkar, Michael N. Cantor, R. Gelman, Frank W. Hartel, Yves A. Lussier
2002	Misc	`conf`	An integrative model for in-silico clinical-genomics discovery science. AMIA Yves A. Lussier, Indra Neil Sarkar, Michael Cantor
2002	J	`jnl`	Characteristic attributes in cancer microarrays. J. Biomed. Informatics Indra Neil Sarkar, Paul J. Planet, T. E. Bael, S. E. Stanley, Mark Siddall, Robert DeSalle, David H. Figurski
2002	Misc	`conf`	Discovering protein similarity using natural language processing. AMIA Indra Neil Sarkar, Thomas C. Rindflesch
2002	Misc	`conf`	Exploring SNOMED Using Phylogenetic Analysis Tools. AMIA Indra Neil Sarkar, Michael N. Cantor, Robert DeSalle, Yves A. Lussier
2002	J	`jnl`	Implementation Brief: Desiderata for Personal Electronic Communication in Clinical Systems. J. Am. Medical Informatics Assoc. Indra Neil Sarkar, Justin Starren
2001	Misc	`conf`	Knowledge Aggregation from Organized Sets (KAOS) Applied to Clinical Data. AMIA Indra Neil Sarkar, Paul J. Planet, Robert DeSalle, David H. Figurski