Iman Hajirasouliha

35 papers A 4B 1C 2Journal 24Unranked 4

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Cancer progression inference using a finite-state model to allow recurrences and losses of mutations. Neural Comput. Appl. Simone Ciccolella, Murray Patterson, Iman Hajirasouliha, Gianluca Della Vedova
2025	J	`jnl`	Generating Synthetic Human Blastocyst Images for In-Vitro Fertilization Blastocyst Grading. CoRR Pavan Narahari, Suraj Rajendran, Lorena Bori, Jonas Malmsten, Qiansheng Zhan, Zev Rosenwaks, Nikica Zaninovic, Iman Hajirasouliha
2024	J	`jnl`	Machine learning for structural design models of continuous beam systems via influence zones. CoRR Adrien Gallet, Andrew Liew, Iman Hajirasouliha, Danny Smyl
2024	J	`jnl`	cloudrna SP Ades : isoform assembly using bulk barcoded RNA sequencing data. Bioinform. Dmitry Meleshko, Andrey D. Prjbelski, Mikhail Raiko, Alexandru I. Tomescu, Hagen U. Tilgner, Iman Hajirasouliha
2023	J	`jnl`	Influence zones for continuous beam systems. CoRR Adrien Gallet, Andrew Liew, Iman Hajirasouliha, Danny Smyl
2021	J	`jnl`	Inferring cancer progression from Single-Cell Sequencing while allowing mutation losses. Bioinform. Simone Ciccolella, Camir Ricketts, Mauricio Soto Gomez, Murray Patterson, Dana Silverbush, Paola Bonizzoni, Iman Hajirasouliha, Gianluca Della Vedova
2021	J	`jnl`	coronaSPAdes: from biosynthetic gene clusters to RNA viral assemblies. Bioinform. Dmitry Meleshko, Iman Hajirasouliha, Anton I. Korobeynikov
2020	J	`jnl`	Meltos: multi-sample tumor phylogeny reconstruction for structural variants. Bioinform. Camir Ricketts, Daniel Seidman, Victoria Popic, Fereydoun Hormozdiari, Serafim Batzoglou, Iman Hajirasouliha
2020	J	`jnl`	Reliability of water distribution networks subjected to seismic hazard: Application of an improved entropy function. Reliab. Eng. Syst. Saf. Hossein Emamjomeh, Roohollah Ahmady Jazany, Hossein Kayhani, Iman Hajirasouliha, Mohammad Reza Bazargan-Lari
2020	J	`jnl`	gpps: an ILP-based approach for inferring cancer progression with mutation losses from single cell data. BMC Bioinform. Simone Ciccolella, Mauricio Soto Gomez, Murray D. Patterson, Gianluca Della Vedova, Iman Hajirasouliha, Paola Bonizzoni
2019	J	`jnl`	BAMSE: Bayesian model selection for tumor phylogeny inference among multiple samples. BMC Bioinform. Hosein Toosi, Ali Moeini, Iman Hajirasouliha
2019	J	`jnl`	Deep learning enables robust assessment and selection of human blastocysts after in vitro fertilization. npj Digit. Medicine Pegah Khosravi, Ehsan Kazemi, Qiansheng Zhan, Jonas Malmsten, Marco Toschi, Pantelis Zisimopoulos, Alexandros Sigaras, Stuart Lavery, Lee A. D. Cooper, Cristina Hickman, Marcos Meseguer, Zev Rosenwaks, Olivier Elemento, Nikica Zaninovic, Iman Hajirasouliha
2018	—	`conf`	Breast Cancer Histopathological Image Classification: A Deep Learning Approach. BIBM Mahboubeh Jannesari, Mehdi Habibzadeh, HamidReza Aboulkheyr, Pegah Khosravi, Olivier Elemento, Mehdi Totonchi, Iman Hajirasouliha
2018	—	`conf`	gpps: an ILP-based approach for inferring cancer progression with mutation losses from single cell data. ICCABS Simone Ciccolella, Mauricio Soto Gomez, Murray Patterson, Gianluca Della Vedova, Iman Hajirasouliha, Paola Bonizzoni
2017	—	`conf`	BAMSE: Bayesian model selection for tumor phylogeny inference among multiple tumor samples. ICCABS Hosein Toosi, Ali Moeini, Iman Hajirasouliha
2014	—	`conf`	A combinatorial algorithm to identify independent and recurrent copy number aberrations across cancer types. ICCABS Hsin-Ta Wu, Iman Hajirasouliha, Benjamin J. Raphael
2014	J	`jnl`	A combinatorial approach for analyzing intra-tumor heterogeneity from high-throughput sequencing data. Bioinform. Iman Hajirasouliha, Ahmad Mahmoody, Benjamin J. Raphael
2014	J	`jnl`	Characterization of structural variants with single molecule and hybrid sequencing approaches. Bioinform. Anna M. Ritz, Ali Bashir, Suzanne S. Sindi, David Hsu, Iman Hajirasouliha, Benjamin J. Raphael
2014	J	`jnl`	Detecting independent and recurrent copy number aberrations using interval graphs. Bioinform. Hsin-Ta Wu, Iman Hajirasouliha, Benjamin J. Raphael
2014	J	`jnl`	Fast and Scalable Inference of Multi-Sample Cancer Lineages. CoRR Victoria Popic, Raheleh Salari, Iman Hajirasouliha, Dorna Kashef Haghighi, Robert B. West, Serafim Batzoglou
2014	C	`conf`	Reconstructing Mutational History in Multiply Sampled Tumors Using Perfect Phylogeny Mixtures. WABI Iman Hajirasouliha, Benjamin J. Raphael
2013	J	`jnl`	MATE-CLEVER: Mendelian-inheritance-aware discovery and genotyping of midsize and long indels. Bioinform. Tobias Marschall, Iman Hajirasouliha, Alexander Schönhuth
2012	J	`jnl`	Convergence to Equilibria in Distributed, Selfish Reallocation Processes with Weighted Tasks. Algorithmica Petra Berenbrink, Tom Friedetzky, Iman Hajirasouliha, Zengjian Hu
2012	J	`jnl`	Mirroring co-evolving trees in the light of their topologies. Bioinform. Iman Hajirasouliha, Alexander Schönhuth, David de Juan, Alfonso Valencia, Süleyman Cenk Sahinalp
2011	J	`jnl`	Comrad: detection of expressed rearrangements by integrated analysis of RNA-Seq and low coverage genome sequence data. Bioinform. Andrew W. McPherson, Chunxiao Wu, Iman Hajirasouliha, Fereydoun Hormozdiari, Faraz Hach, Anna Lapuk, Stanislav Volik, Sohrab P. Shah, Colin C. Collins, Süleyman Cenk Sahinalp
2011	J	`jnl`	Mirroring co-evolving trees in the light of their topologies CoRR Iman Hajirasouliha, Alexander Schönhuth, David de Juan, Alfonso Valencia, Süleyman Cenk Sahinalp
2011	B	`conf`	Simultaneous Structural Variation Discovery in Multiple Paired-End Sequenced Genomes. RECOMB Fereydoun Hormozdiari, Iman Hajirasouliha, Andrew W. McPherson, Evan E. Eichler, Süleyman Cenk Sahinalp
2010	J	`jnl`	A simplified model for seismic response prediction of concentrically braced frames. Adv. Eng. Softw. Iman Hajirasouliha, Alireza Doostan
2010	J	`jnl`	Detection and characterization of novel sequence insertions using paired-end next-generation sequencing. Bioinform. Iman Hajirasouliha, Fereydoun Hormozdiari, Can Alkan, Jeffrey M. Kidd, Inanç Birol, Evan E. Eichler, Süleyman Cenk Sahinalp
2010	J	`jnl`	Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery. Bioinform. Fereydoun Hormozdiari, Iman Hajirasouliha, Phuong Dao, Faraz Hach, Deniz Yörükoglu, Can Alkan, Evan E. Eichler, Süleyman Cenk Sahinalp
2009	C	`conf`	Quantifying Systemic Evolutionary Changes by Color Coding Confidence-Scored PPI Networks. WABI Phuong Dao, Alexander Schönhuth, Fereydoun Hormozdiari, Iman Hajirasouliha, Süleyman Cenk Sahinalp, Martin Ester
2008	A	`conf`	Biomolecular network motif counting and discovery by color coding. ISMB Noga Alon, Phuong Dao, Iman Hajirasouliha, Fereydoun Hormozdiari, Süleyman Cenk Sahinalp
2008	A	`conf`	Optimal pooling for genome re-sequencing with ultra-high-throughput short-read technologies. ISMB Iman Hajirasouliha, Fereydoun Hormozdiari, Süleyman Cenk Sahinalp, Inanç Birol
2007	A	`conf`	Convergence to Equilibria in Distributed, Selfish Reallocation Processes with Weighted Tasks. ESA Petra Berenbrink, Tom Friedetzky, Iman Hajirasouliha, Zengjian Hu
2007	A	`conf`	On Completing Latin Squares. STACS Iman Hajirasouliha, Hossein Jowhari, Ravi Kumar, Ravi Sundaram