Ilya N. Shindyalov

20 papers A 2C 1Misc 2Journal 13Unranked 2
YearRankTypeTitle / Venue / Authors
2006 J jnl
DMAPS: a database of multiple alignments for protein structures.
Nucleic Acids Res.
Chittibabu Guda, Lipika R. Pal, Ilya N. Shindyalov
2004 J jnl
A New Scoring Function and Associated Statistical Significance for Structure Alignment by CE.
J. Comput. Biol.
Yuting Jia, T. Gregory Dewey, Ilya N. Shindyalov, Philip E. Bourne
2004 J jnl
A case study of high-throughput biological data processing on parallel platforms.
Bioinform.
Dmitry Pekurovsky, Ilya N. Shindyalov, Philip E. Bourne
2004 J jnl
CE-MC: a multiple protein structure alignment server.
Nucleic Acids Res.
Chittibabu Guda, Sifang Lu, Eric D. Scheeff, Philip E. Bourne, Ilya N. Shindyalov
2004 J jnl
The Encyclopedia of Life Project: Grid Software and Deployment.
New Gener. Comput.
Wilfred W. Li, Robert W. Byrnes, Jim Hayes, Adam Birnbaum, Vicente M. Reyes, Atif Shahab, Coleman Mosley, Dmitry Pekurovsky, Greg B. Quinn, Ilya N. Shindyalov, Henri Casanova, Larry Ang, Fran Berman, Peter W. Arzberger, Mark A. Miller, Philip E. Bourne
2004 Misc conf
The Status of Structural Genomics Defined Through the Analysis of Current Targets and Structures.
Pacific Symposium on Biocomputing
Philip E. Bourne, C. K. J. Allerston, Werner G. Krebs, Wilfred W. Li, Ilya N. Shindyalov, Adam Godzik, Iddo Friedberg, Tong Liu, David L. Wild, Seungwoo Hwang, Zoubin Ghahramani, Li Chen, John D. Westbrook
2003 J jnl
PDP: protein domain parser.
Bioinform.
Nickolai Alexandrov, Ilya N. Shindyalov
2003 — conf
Parallel Processing on Large Redudant Biological Data Sets: Protein Structures Classification with CEPAR.
PARCO
Dmitry Pekurovsky, Ilya N. Shindyalov, Philip E. Bourne
2002 C conf
Building an automated classification of DNA-binding protein domains.
ECCB
Julia V. Ponomarenko, Philip E. Bourne, Ilya N. Shindyalov
2002 J jnl
CKAAPs DB: a Conserved Key Amino Acid Positions DataBase.
Nucleic Acids Res.
Wilfred W. Li, Boojala V. B. Reddy, John G. Tate, Ilya N. Shindyalov, Philip E. Bourne
2001 Misc conf
A New Algorithm for the Alignment of Multiple Protein Structures Using Monte Carlo Optimization.
Pacific Symposium on Biocomputing
Chittibabu Guda, Eric D. Scheeff, Philip E. Bourne, Ilya N. Shindyalov
2001 J jnl
A database and tools for 3-D protein structure comparison and alignment using the Combinatorial Extension (CE) algorithm.
Nucleic Acids Res.
Ilya N. Shindyalov, Philip E. Bourne
2001 J jnl
CKAAPs DB: a conserved key amino acid positions database.
Nucleic Acids Res.
Wilfred W. Li, Boojala V. B. Reddy, Ilya N. Shindyalov, Philip E. Bourne
2000 J jnl
The Protein Data Bank.
Nucleic Acids Res.
Helen M. Berman, John D. Westbrook, Zukang Feng, Gary Gilliland, T. N. Bhat, Helge Weissig, Ilya N. Shindyalov, Philip E. Bourne
1997 J jnl
Protein data representation and query using optimized data decomposition.
Comput. Appl. Biosci.
Ilya N. Shindyalov, Philip E. Bourne
1995 — conf
Design and use of a software framework to obtain information derived from macromolecular structure data.
HICSS (5)
Ilya N. Shindyalov, Weider Chang, J. A. Cooper, Philip E. Bourne
1995 A conf
Identification of CDNA Sequences by Specific Oligonucleotide Sets - A Computer Tool and Application.
ISMB
Nikolay A. Kolchanov, Oleg V. Vishnevsky, Vladimir N. Babenko, Alexander E. Kel, Ilya N. Shindyalov
1994 A conf
Design and Application of a C++ Macromolecular Class Library.
ISMB
Weider Chang, Ilya N. Shindyalov, Calton Pu, Philip E. Bourne
1994 J jnl
Design and application of PDBlib, a C++ macromolecular class library.
Comput. Appl. Biosci.
Weider Chang, Ilya N. Shindyalov, Calton Pu, Philip E. Bourne
1992 J jnl
Fast, statistically based alignment of amino acid sequences on the base of diagonal fragments of DOT-matrices.
Comput. Appl. Biosci.
Victor B. Strelets, Ilya N. Shindyalov, Nikolay A. Kolchanov, Luciano Milanesi