Ilpo Vattulainen

12 papers Journal 11
YearRankTypeTitle / Venue / Authors
2023 J jnl
Unbreaking Assemblies in Molecular Simulations with Periodic Boundaries.
J. Chem. Inf. Model.
Bart M. H. Bruininks, Tsjerk A. Wassenaar, Ilpo Vattulainen
2019 J jnl
Reduced level of docosahexaenoic acid shifts GPCR neuroreceptors to less ordered membrane regions.
PLoS Comput. Biol.
Matti Javanainen, Giray Enkavi, Ramon Guixà-González, Waldemar Kulig, Hector Martinez-Seara, Ilya Levental, Ilpo Vattulainen
2018 J jnl
Assessment of mutation probabilities of KRAS G12 missense mutants and their long-timescale dynamics by atomistic molecular simulations and Markov state modeling.
PLoS Comput. Biol.
Tatu Pantsar, Sami Rissanen, Daniel Dauch, Tuomo Laitinen, Ilpo Vattulainen, Antti Poso
2017 J jnl
Atomistic fingerprint of hyaluronan-CD44 binding.
PLoS Comput. Biol.
Joni Vuorio, Ilpo Vattulainen, Hector Martinez-Seara
2017 J jnl
Concerted regulation of npc2 binding to endosomal/lysosomal membranes by bis(monoacylglycero)phosphate and sphingomyelin.
PLoS Comput. Biol.
Giray Enkavi, Heikki Mikkolainen, Burçin Güngör, Elina Ikonen, Ilpo Vattulainen
2014 J jnl
How Anacetrapib Inhibits the Activity of the Cholesteryl Ester Transfer Protein? Perspective through Atomistic Simulations.
PLoS Comput. Biol.
Tarja Äijänen, Artturi Koivuniemi, Matti Javanainen, Sami Rissanen, Tomasz Róg, Ilpo Vattulainen
2012 J jnl
Lipid Exchange Mechanism of the Cholesteryl Ester Transfer Protein Clarified by Atomistic and Coarse-grained Simulations.
PLoS Comput. Biol.
Artturi Koivuniemi, Timo Vuorela, Petri T. Kovanen, Ilpo Vattulainen, Marja T. Hyvönen
2010 J jnl
Role of Lipids in Spheroidal High Density Lipoproteins.
PLoS Comput. Biol.
Timo Vuorela, Andrea Catte, Perttu S. Niemelä, Anette Hall, Marja T. Hyvönen, Siewert J. Marrink, Mikko Karttunen, Ilpo Vattulainen
2009 J jnl
Conformational Changes and Slow Dynamics through Microsecond Polarized Atomistic Molecular Simulation of an Integral Kv1.2 Ion Channel.
PLoS Comput. Biol.
Pär Bjelkmar, Perttu S. Niemelä, Ilpo Vattulainen, Erik Lindahl
2007 J jnl
Assessing the Nature of Lipid Raft Membranes.
PLoS Comput. Biol.
Perttu S. Niemelä, Samuli Ollila, Marja T. Hyvönen, Mikko Karttunen, Ilpo Vattulainen
2007 J jnl
Long-range interactions and parallel scalability in molecular simulations.
Comput. Phys. Commun.
Michael Patra, Marja T. Hyvönen, Emma Falck, Mohsen Sabouri-Ghomi, Ilpo Vattulainen, Mikko Karttunen
2004 — ch.
Modeling Lipid-Sterol Bilayers: Applications to Structural Evolution, Lateral Diffusion, and Rafts.
Numerical Computer Methods, Part D
Martin J. Zuckermann, John H. Ipsen, Ling Miao, Ole G. Mouritsen, Morten Nielsen, James Polson, Jenifer Thewalt, Ilpo Vattulainen, Hong Zhu