Ilias Tagkopoulos

35 papers C 2Journal 25Unranked 8
YearRankTypeTitle / Venue / Authors
2026 J jnl
Translating Dietary Standards into Healthy Meals with Minimal Substitutions.
CoRR
Trevor Chan, Ilias Tagkopoulos
2025 J jnl
AI for Sustainable Future Foods.
CoRR
Bianca Datta, Markus J. Buehler, Yvonne Chow, Kristina Gligoric, Dan Jurafsky, David L. Kaplan, Rodrigo Ledesma-Amaro, Giorgia Del Missier, Lisa Neidhardt, Karim Pichara, Benjamín Sánchez-Lengeling, Miek Schlangen, Skyler R. St. Pierre, Ilias Tagkopoulos, Anna T. Thomas, Nicholas James Watson, Ellen Kuhl
2025 J jnl
Advancing AI in Agriculture through Large-Scale Collaborative Research.
Commun. ACM
Vikram S. Adve, Steve Brown, Alan Fern, Baskar Ganapathysubramanian, Ananth Kalyanaraman, Shashi Shekhar, Ilias Tagkopoulos, Jessica M. Wedow
2025 J jnl
SkillFlow: Efficient Skill and Code Transfer Through Communication in Adapting AI Agents.
CoRR
Pagkratios Tagkopoulos, Fangzhou Li, Ilias Tagkopoulos
2025 J jnl
The Future of Food: How Artificial Intelligence is Transforming Food Manufacturing.
CoRR
Xu Zhou, Ivor Prado, AIFPDS participants, Ilias Tagkopoulos
2024 J jnl
FoodAtlas: Automated knowledge extraction of food and chemicals from literature.
Comput. Biol. Medicine
Jason Youn, Fangzhou Li, Gabriel Simmons, Shanghyeon Kim, Ilias Tagkopoulos
2024 J jnl
Interpreting Inflammation Prediction Model via Tag-based Cohort Explanation.
CoRR
Fanyu Meng, Jules Larke, Xin Liu, Zhaodan Kong, Xin Chen, Danielle G. Lemay, Ilias Tagkopoulos
2024 J jnl
Predicting clinical trial success for Clostridium difficile infections based on preclinical data.
Frontiers Artif. Intell.
Fangzhou Li, Jason Youn, Christian Millsop, Ilias Tagkopoulos
2024 J jnl
The AIFS Institute: Building a better food system through AI.
AI Mag.
Ilias Tagkopoulos, J. Mason Earles, Danielle G. Lemay, Xin Liu, Nitin Nitin, Aaron D. Smith, Tarek I. Zohdi, Stephen F. Brown
2023 — conf
KGLM: Integrating Knowledge Graph Structure in Language Models for Link Prediction.
*SEM@ACL
Jason Youn, Ilias Tagkopoulos
2023 J jnl
Semi-Automated Construction of Food Composition Knowledge Base.
CoRR
Jason Youn, Fangzhou Li, Ilias Tagkopoulos
2022 J jnl
Algorithmic lifestyle optimization.
J. Am. Medical Informatics Assoc.
Ameen Eetemadi, Ilias Tagkopoulos
2022 J jnl
KGLM: Integrating Knowledge Graph Structure in Language Models for Link Prediction.
CoRR
Jason Youn, Ilias Tagkopoulos
2022 J jnl
Special report: AI Institute for next generation food systems (AIFS).
Comput. Electron. Agric.
Ilias Tagkopoulos, Stephen F. Brown, Xin Liu, Qing Zhao, Tarek I. Zohdi, J. Mason Earles, Nitin Nitin, Daniel E. Runcie, Danielle G. Lemay, Aaron D. Smith, Pamela C. Ronald, Hao Feng, Gabriel David Youtsey
2020 — conf
BWCNN: Blink to Word, a Real-Time Convolutional Neural Network Approach.
ICIOT
Albara Ah Ramli, Rex Liu, Rahul Krishnamoorthy, Vishal I B, Xiaoxiao Wang, Ilias Tagkopoulos, Xin Liu
2020 J jnl
BWCNN: Blink to Word, a Real-Time Convolutional Neural Network Approach.
CoRR
Albara Ah Ramli, Rex Liu, Rahul Krishnamoorthy, Vishal I B, Xiaoxiao Wang, Ilias Tagkopoulos, Xin Liu
2020 J jnl
Using Word Embeddings to Learn a Better Food Ontology.
Frontiers Artif. Intell.
Jason Youn, Tarini Naravane, Ilias Tagkopoulos
2019 J jnl
Genetic Neural Networks: an artificial neural network architecture for capturing gene expression relationships.
Bioinform.
Ameen Eetemadi, Ilias Tagkopoulos
2017 J jnl
DeepPep: Deep proteome inference from peptide profiles.
PLoS Comput. Biol.
Minseung Kim, Ameen Eetemadi, Ilias Tagkopoulos
2015 J jnl
A Distribution Adaptive Framework for Prediction Interval Estimation Using Nominal Variables.
CoRR
Ameen Eetemadi, Ilias Tagkopoulos
2015 J jnl
Microbial Forensics: Predicting Phenotypic Characteristics and Environmental Conditions from Large-Scale Gene Expression Profiles.
PLoS Comput. Biol.
Minseung Kim, Violeta Zorraquino, Ilias Tagkopoulos
2014 J jnl
A systems biology analysis of brain microvascular endothelial cell lipotoxicity.
BMC Syst. Biol.
Hnin H. Aung, Athanasios Tsoukalas, John C. Rutledge, Ilias Tagkopoulos
2014 J jnl
From vital signs to clinical outcomes for patients with sepsis: a machine learning basis for a clinical decision support system.
J. Am. Medical Informatics Assoc.
Eren Gultepe, Jeffrey P. Green, Hien Nguyen, Jason Adams, Timothy E. Albertson, Ilias Tagkopoulos
2013 J jnl
A flood-based information flow analysis and network minimization method for gene regulatory networks.
BMC Bioinform.
Andreas Pavlogiannis, Vadim Mozhayskiy, Ilias Tagkopoulos
2012 — conf
A Bayesian network for early diagnosis of sepsis patients: a basis for a clinical decision support system.
ICCABS
Eren Gultepe, Hien Nguyen, Timothy E. Albertson, Ilias Tagkopoulos
2012 — conf
A robust, library-based, optimization-driven method for automatic gene circuit design.
ICCABS
Linh Hunyh, Ilias Tagkopoulos
2012 J jnl
Guided evolution of in silico microbial populations in complex environments accelerates evolutionary rates through a step-wise adaptation.
BMC Bioinform.
Vadim Mozhayskiy, Ilias Tagkopoulos
2012 J jnl
Horizontal gene transfer dynamics and distribution of fitness effects during microbial in silico evolution.
BMC Bioinform.
Vadim Mozhayskiy, Ilias Tagkopoulos
2011 — conf
A scalable multi-scale framework for parallel simulation and visualization of microbial evolution.
TG
Vadim Mozhayskiy, Bob Miller, Kwan-Liu Ma, Ilias Tagkopoulos
2011 — conf
EVEVis: A multi-scale visualization system for dense evolutionary data.
BioVis
Robert Miller, Vadim Mozhayskiy, Ilias Tagkopoulos, Kwan-Liu Ma
2006 J jnl
Symmetric and Asymmetric Multi-modality Biclustering Analysis for Microarray Data Matrix.
J. Bioinform. Comput. Biol.
Sun-Yuan Kung, Man-Wai Mak, Ilias Tagkopoulos
2005 C conf
A Transcriptional Approach to Gene Clustering.
CIBCB
Ilias Tagkopoulos
2005 C conf
Multi-Class Biclustering and Classification Based on Modeling of Gene Regulatory Networks.
BIBE
Ilias Tagkopoulos, Nikolai Slavov, Sun-Yuan Kung
2005 — conf
Multi-Metric and Multi-Substructure Biclustering Analysis for Gene Expression Data.
CSB
Sun-Yuan Kung, Man-Wai Mak, Ilias Tagkopoulos
2003 — conf
A custom FPGA for the simulation of gene regulatory networks.
ACM Great Lakes Symposium on VLSI
Ilias Tagkopoulos, Charles A. Zukowski, German Cavelier, Dimitris Anastassiou