Igor Nenadic

18 papers Journal 16Unranked 2
YearRankTypeTitle / Venue / Authors
2026 J jnl
Nat. Comput. Sci.
Lukas Fisch, Nils R. Winter, Janik Goltermann, Carlotta B. C. Barkhau, Daniel Emden, Jan Ernsting, Maximilian Konowski, Ramona Leenings, Tiana Borgers, Kira Flinkenflügel, Dominik Grotegerd, Anna Kraus, Elisabeth J. Leehr, Susanne Meinert, Frederike Stein, Lea Teutenberg, Florian Thomas-Odenthal, Paula Usemann, Marco Hermesdorf, Hamidreza Jamalabadi, Andreas J. Forstner, Igor Nenadic, Benjamin Straube, Tilo Kircher, Klaus Berger, Benjamin Risse, Udo Dannlowski, Tim Hahn
2025 J jnl
Artif. Intell. Medicine
Inês W. Sampaio, Emma Tassi, Marcella Bellani, Francesco Benedetti, Igor Nenadic, Mary L. Phillips, Fabrizio Piras, Lakshmi Yatham, Anna Maria Bianchi, Paolo Brambilla, Eleonora Maggioni
2024 J jnl
NeuroImage
Felix Zahnert, Urs Kleinholdermann, Marcus Belke, Boris Keil, Katja Menzler, David J. Pedrosa, Lars Timmermann, Tilo Kircher, Igor Nenadic, Susanne Knake
2024 J jnl
CoRR
Lukas Fisch, Nils R. Winter, Janik Goltermann, Carlotta B. C. Barkhau, Daniel Emden, Jan Ernsting, Maximilian Konowski, Ramona Leenings, Tiana Borgers, Kira Flinkenflügel, Dominik Grotegerd, Anna Kraus, Elisabeth J. Leehr, Susanne Meinert, Frederike Stein, Lea Teutenberg, Florian Thomas-Odenthal, Paula Usemann, Marco Hermesdorf, Hamidreza Jamalabadi, Andreas Jansen, Igor Nenadic, Benjamin Straube, Tilo Kircher, Klaus Berger, Benjamin Risse, Udo Dannlowski, Tim Hahn
2023 J jnl
NeuroImage
Julia-Katharina Pfarr, Tina Meller, Katharina Brosch, Frederike Stein, Florian Thomas-Odenthal, Ulrika Evermann, Adrian Wroblewski, Kai Gustav Ringwald, Tim Hahn, Susanne Meinert, Alexandra Winter, Katharina Thiel, Kira Flinkenflügel, Andreas Jansen, Axel Krug, Udo Dannlowski, Tilo Kircher, Christian Gaser, Igor Nenadic
2023 J jnl
CoRR
Vladimir Belov, Tracy Erwin-Grabner, Ling-Li Zeng, Christopher R. K. Ching, André Aleman, Alyssa R. Amod, Zeynep Basgoze, Francesco Benedetti, Bianca Besteher, Katharina Brosch, Robin Bülow, Romain Colle, Colm G. Connolly, Emmanuelle Corruble, Baptiste Couvy-Duchesne, Kathryn Cullen, Udo Dannlowski, Christopher G. Davey, Annemiek Dols, Jan Ernsting, Jennifer W. Evans, Lukas Fisch, Paola Fuentes-Claramonte, Ali Saffet Gonul, Ian H. Gotlib, Hans Jörgen Grabe, Nynke A. Groenewold, Dominik Grotegerd, Tim Hahn, J. Paul Hamilton, Laura K. M. Han, Ben J. Harrison, Tiffany C. Ho, Neda Jahanshad, Alec J. Jamieson, Andriana Karuk, Tilo Kircher, Bonnie Klimes-Dougan, Sheri-Michelle Koopowitz, Thomas M. Lancaster, Ramona Leenings, Meng Li, David E. J. Linden, Frank P. MacMaster, David M. A. Mehler, Susanne Meinert, Elisa Melloni, Bryon A. Mueller, Benson Mwangi, Igor Nenadic, Amar Ojha, Yasumasa Okamoto, Mardien L. Oudega, Brenda W. J. H. Penninx, Sara Poletti, Edith Pomarol-Clotet, Maria J. Portella, Elena Pozzi, Joaquim Radua, Elena Rodríguez-Cano, Matthew D. Sacchet, Raymond Salvador, Anouk Schrantee, Kang Sim, Jair C. Soares, Aleix Solanes, Dan J. Stein, Frederike Stein, Aleks Stolicyn, Sophia I. Thomopoulos, Yara J. Toenders, Aslihan Uyar-Demir, Eduard Vieta, Yolanda Vives-Gilabert, Henry Völzke, Martin Walter, Heather C. Whalley, Sarah Whittle, Nils R. Winter, Katharina Wittfeld, Margaret J. Wright, Mon-Ju Wu, Tony T. Yang, Carlos Zarate, Dick J. Veltman, Lianne Schmaal, Paul M. Thompson, Roberto Goya-Maldonado
2021 J jnl
CoRR
Tim Hahn, Hamidreza Jamalabadi, Daniel Emden, Janik Goltermann, Jan Ernsting, Nils R. Winter, Lukas Fisch, Ramona Leenings, Kelvin Sarink, Vincent Holstein, Marius Gruber, Dominik Grotegerd, Susanne Meinert, Katharina Dohm, Elisabeth J. Leehr, Maike Richter, Lisa Sindermann, Verena Enneking, Hannah Lemke, Stephanie H. Witt, Marcella Rietschel, Katharina Brosch, Julia-Katharina Pfarr, Tina Meller, Kai Gustav Ringwald, Simon Schmitt, Frederike Stein, Igor Nenadic, Tilo Kircher, Bertram Müller-Myhsok, Till F. M. Andlauer, Jonathan Repple, Udo Dannlowski, Nils Opel
2021 J jnl
CoRR
Tim Hahn, Nils R. Winter, Jan Ernsting, Marius Gruber, Marco J. Mauritz, Lukas Fisch, Ramona Leenings, Kelvin Sarink, Julian Blanke, Vincent Holstein, Daniel Emden, Marie Beisemann, Nils Opel, Dominik Grotegerd, Susanne Meinert, Walter Heindel, Stephanie H. Witt, Marcella Rietschel, Markus M. Nöthen, Andreas J. Forstner, Tilo Kircher, Igor Nenadic, Andreas Jansen, Bertram Müller-Myhsok, Till F. M. Andlauer, Martin Walter, Martijn P. van den Heuvel, Hamidreza Jamalabadi, Udo Dannlowski, Jonathan Repple
2020 J jnl
NeuroImage
Joaquim Radua, Eduard Vieta, Russell T. Shinohara, Peter V. Kochunov, Yann Quidé, Melissa J. Green, Cynthia S. Weickert, Thomas Weickert, Jason Bruggemann, Tilo Kircher, Igor Nenadic, Murray J. Cairns, Marc L. Seal, Ulrich Schall, Frans Henskens, Janice M. Fullerton, Bryan J. Mowry, Christos Pantelis, Julian Pineda-Zapata
2019 J jnl
CoRR
Claas Flint, Katharina Förster, Sophie A. Koser, Carsten Konrad, Pienie Zwitserlood, Klaus Berger, Marco Hermesdorf, Tilo Kircher, Igor Nenadic, Axel Krug, Bernhard T. Baune, Katharina Dohm, Ronny Redlich, Nils Opel, Tim Hahn, Xiaoyi Jiang, Udo Dannlowski, Dominik Grotegerd
2019 J jnl
CoRR
Claas Flint, Micah Cearns, Nils Opel, Ronny Redlich, David M. A. Mehler, Daniel Emden, Nils R. Winter, Ramona Leenings, Simon B. Eickhoff, Tilo Kircher, Axel Krug, Igor Nenadic, Volker Arolt, Scott Clark, Bernhard T. Baune, Xiaoyi Jiang, Udo Dannlowski, Tim Hahn
2011 J jnl
NeuroImage
Rachel Aine Yotter, Igor Nenadic, Gabriel Ziegler, Paul M. Thompson, Christian Gaser
2010 J jnl
NeuroImage
Igor Nenadic, Heinrich Sauer, Christian Gaser
2010 conf
MICCAI (2)
Rachel Aine Yotter, Paul M. Thompson, Igor Nenadic, Christian Gaser
2010 J jnl
NeuroImage
Stefan Smesny, Berko Milleit, Igor Nenadic, Christoph Preul, Daniel Kinder, Jürgen Lasch, Ingo Willhardt, Heinrich Sauer, Christian Gaser
2008 J jnl
NeuroImage
Erin A. Hazlett, Monte S. Buchsbaum, Jing Zhang, Randall E. Newmark, Cathryn F. Glanton, Yuliya Zelmanova, M. Mehmet Haznedar, Kingwai Chu, Igor Nenadic, Eileen M. Kemether, Cheuk Y. Tang, Antonia S. New, Larry J. Siever
2007 J jnl
NeuroImage
Stefan Smesny, Timm Rosburg, Igor Nenadic, Klaus Peter Fenk, Sebastian Kunstmann, Reinhardt Rzanny, Hans-Peter Volz, Heinrich Sauer
2002 conf
Bildverarbeitung für die Medizin
Christian Gaser, Igor Nenadic, Heinrich Sauer
tests/unit/test_decompile_modules.py
← Index tests/unit/test_decompile_modules.py python
"""
Unit tests for --decompile-modules flag.

Tests that:
1. CLI argument parsing and validation works correctly
2. decompile_modules is threaded through the entire call chain
3. BinaryNinjaDecompiler.analyze_binary() gates extractions per selected modules
4. DecompileBinja.prepare_export_data() filters DB tables per selected modules
"""
import os
import pytest
from unittest.mock import Mock, patch, MagicMock

pytestmark = [pytest.mark.unit]


# ============================================================================
# CLI Argument Parsing Tests
# ============================================================================

class TestDecompileModulesCliArgument:
    """Tests for --decompile-modules CLI argument parsing in start.py."""

    def _parse_args(self, args_list):
        """Helper to parse CLI args without running main()."""
        import argparse

        parser = argparse.ArgumentParser()
        input_group = parser.add_mutually_exclusive_group(required=True)
        input_group.add_argument("--path")
        input_group.add_argument("--s3", action="store_true")
        input_group.add_argument("--s3-solo", metavar="S3_KEY")
        input_group.add_argument("--nomad-job", action="store_true")
        input_group.add_argument("--date", metavar="YYYY-MM-DD")
        input_group.add_argument("--range", nargs=2)
        input_group.add_argument("--analyzed", action="store_true")

        parser.add_argument("--repo")
        parser.add_argument("--index_prefix", default="redb")
        parser.add_argument("-d", "--decompile", action="store_true")
        parser.add_argument("-m", "--modules", default="all")
        parser.add_argument("--decompile-modules", default="all")
        parser.add_argument("--force", action="store_true")
        parser.add_argument("--dry-run", action="store_true")

        return parser.parse_args(args_list)

    def test_decompile_modules_default_all(self):
        """--decompile-modules defaults to 'all'."""
        args = self._parse_args(["--path", "/tmp/test", "--repo", "test"])
        assert args.decompile_modules == "all"

    def test_decompile_modules_single(self):
        """--decompile-modules accepts a single module."""
        args = self._parse_args([
            "--path", "/tmp/test", "--repo", "test",
            "-d", "--decompile-modules", "strings"
        ])
        assert args.decompile_modules == "strings"

    def test_decompile_modules_comma_separated(self):
        """--decompile-modules accepts comma-separated modules."""
        args = self._parse_args([
            "--path", "/tmp/test", "--repo", "test",
            "-d", "--decompile-modules", "cfg,llil,strings"
        ])
        assert args.decompile_modules == "cfg,llil,strings"

    def test_decompile_modules_with_decompile_flag(self):
        """--decompile-modules works with -d flag."""
        args = self._parse_args([
            "--path", "/tmp/test", "--repo", "test",
            "-d", "--decompile-modules", "disassembly"
        ])
        assert args.decompile is True
        assert args.decompile_modules == "disassembly"


# ============================================================================
# Validation Tests
# ============================================================================

class TestDecompileModulesValidation:
    """Tests for --decompile-modules validation logic in start.py."""

    def test_valid_modules_set_parsing(self):
        """Valid comma-separated modules are parsed into a set."""
        VALID = {"all", "decompilation", "disassembly", "cfg", "llil", "strings"}
        raw = "cfg,llil,strings"
        modules_set = {m.strip() for m in raw.split(",")}
        invalid = modules_set - VALID
        assert invalid == set()
        assert modules_set == {"cfg", "llil", "strings"}

    def test_invalid_module_detected(self):
        """Invalid module names are detected."""
        VALID = {"all", "decompilation", "disassembly", "cfg", "llil", "strings"}
        raw = "cfg,invalid_module"
        modules_set = {m.strip() for m in raw.split(",")}
        invalid = modules_set - VALID
        assert invalid == {"invalid_module"}

    def test_all_keyword_as_set(self):
        """'all' is parsed into {'all'} set."""
        raw = "all"
        if raw == "all":
            modules_set = {"all"}
        assert modules_set == {"all"}

    def test_whitespace_handling(self):
        """Whitespace around module names is stripped."""
        raw = " cfg , llil , strings "
        modules_set = {m.strip() for m in raw.split(",")}
        assert modules_set == {"cfg", "llil", "strings"}


# ============================================================================
# Ingestor Parameter Storage Tests
# ============================================================================

class TestIngestorDecompileModules:
    """Tests that Ingestor stores decompile_modules correctly."""

    @patch('builtins.open', MagicMock())
    @patch('redb.ingestor.multiprocessing')
    @patch('redb.ingestor.datetime')
    def test_ingestor_stores_decompile_modules(self, mock_datetime, mock_mp):
        """Ingestor stores the decompile_modules set."""
        mock_mp.Manager.return_value.dict = Mock(side_effect=[{}, {}])
        mock_datetime.today.return_value.strftime.return_value = "20260222"

        from redb.ingestor import Ingestor
        ingestor = Ingestor(
            path="/tmp/test", repository="test", index_prefix="redb",
            decompile_modules={"cfg", "strings"}
        )
        assert ingestor.decompile_modules == {"cfg", "strings"}

    @patch('builtins.open', MagicMock())
    @patch('redb.ingestor.multiprocessing')
    @patch('redb.ingestor.datetime')
    def test_ingestor_defaults_to_all(self, mock_datetime, mock_mp):
        """Ingestor defaults decompile_modules to {'all'} when not provided."""
        mock_mp.Manager.return_value.dict = Mock(side_effect=[{}, {}])
        mock_datetime.today.return_value.strftime.return_value = "20260222"

        from redb.ingestor import Ingestor
        ingestor = Ingestor(
            path="/tmp/test", repository="test", index_prefix="redb"
        )
        assert ingestor.decompile_modules == {"all"}

    @patch('builtins.open', MagicMock())
    @patch('redb.ingestor.multiprocessing')
    @patch('redb.ingestor.datetime')
    def test_ingestor_none_defaults_to_all(self, mock_datetime, mock_mp):
        """Ingestor converts None decompile_modules to {'all'}."""
        mock_mp.Manager.return_value.dict = Mock(side_effect=[{}, {}])
        mock_datetime.today.return_value.strftime.return_value = "20260222"

        from redb.ingestor import Ingestor
        ingestor = Ingestor(
            path="/tmp/test", repository="test", index_prefix="redb",
            decompile_modules=None
        )
        assert ingestor.decompile_modules == {"all"}


# ============================================================================
# Function Chain Threading Tests
# ============================================================================

class TestDecompileModulesThreading:
    """Tests that decompile_modules is correctly threaded through the call chain."""

    @patch('redb.workers.process_binary_file')
    @patch('redb.workers.is_binary_file', return_value=True)
    def test_process_file_internal_passes_decompile_modules(self, mock_is_binary, mock_process):
        """_process_file_internal passes decompile_modules to process_binary_file."""
        from redb.ingestor import _process_file_internal

        mock_process.return_value = (Mock(), "pebin")
        logger = Mock()
        modules = {"cfg", "strings"}

        _process_file_internal(
            "/tmp/test.bin", False, "redb", logger,
            decompile_modules=modules
        )

        mock_process.assert_called_once()
        call_kwargs = mock_process.call_args[1]
        assert call_kwargs["decompile_modules"] == modules

    @patch('redb.workers.process_binary_file')
    @patch('redb.workers.is_binary_file', return_value=True)
    def test_process_file_internal_default_decompile_modules_none(self, mock_is_binary, mock_process):
        """_process_file_internal defaults decompile_modules to None."""
        from redb.ingestor import _process_file_internal

        mock_process.return_value = (Mock(), "pebin")
        logger = Mock()

        _process_file_internal("/tmp/test.bin", False, "redb", logger)

        call_kwargs = mock_process.call_args[1]
        assert call_kwargs["decompile_modules"] is None

    @patch('redb.workers._process_file_internal')
    def test_process_file_passes_decompile_modules(self, mock_internal):
        """process_file passes decompile_modules to _process_file_internal."""
        from redb.workers import process_file

        mock_internal.return_value = (Mock(), "pebin")
        modules = {"llil", "disassembly"}

        with patch('redb.workers.setup_direct_logger', return_value=Mock()):
            process_file(
                "/tmp/test.bin", False, "redb", "/tmp/log", 1, 1,
                decompile_modules=modules
            )

        mock_internal.assert_called_once()
        call_kwargs = mock_internal.call_args[1]
        assert call_kwargs["decompile_modules"] == modules

    @patch('redb.workers._process_file_internal')
    def test_process_s3_file_passes_decompile_modules(self, mock_internal):
        """process_s3_file passes decompile_modules to _process_file_internal."""
        from redb.workers import process_s3_file

        mock_internal.return_value = (Mock(), "pebin")
        modules = {"cfg"}

        with patch('redb.workers.setup_direct_logger', return_value=Mock()), \
             patch('redb.workers.download_s3_object', return_value="/tmp/downloaded.bin"):
            process_s3_file(
                "bucket", "key", "/tmp", False, "redb", "/tmp/log", 1, 1,
                decompile_modules=modules
            )

        mock_internal.assert_called_once()
        call_kwargs = mock_internal.call_args[1]
        assert call_kwargs["decompile_modules"] == modules

    @patch('redb.workers.process_binary_file')
    def test_process_zip_passes_decompile_modules(self, mock_process):
        """process_zip_file passes decompile_modules to process_binary_file."""
        from redb.workers import process_zip_file

        mock_process.return_value = (Mock(), "pebin")
        logger = Mock()
        modules = {"strings", "decompilation"}

        import tempfile
        import zipfile

        with tempfile.NamedTemporaryFile(suffix=".zip", delete=False) as tmp:
            tmp_path = tmp.name

        try:
            with zipfile.ZipFile(tmp_path, 'w') as zf:
                zf.writestr("test.bin", b"\x00" * 100)

            process_zip_file(
                tmp_path, False, "redb", logger, "all",
                decompile_modules=modules
            )

            mock_process.assert_called_once()
            call_kwargs = mock_process.call_args[1]
            assert call_kwargs["decompile_modules"] == modules
        finally:
            os.unlink(tmp_path)

    @patch('redb.workers.process_binary_file')
    def test_process_7zip_passes_decompile_modules(self, mock_process):
        """process_7zip_file passes decompile_modules to process_binary_file."""
        from redb.workers import process_7zip_file

        mock_process.return_value = (Mock(), "pebin")
        logger = Mock()
        modules = {"cfg", "llil"}

        with patch('redb.workers.py7zr') as mock_py7zr:
            mock_zf = Mock()
            mock_py7zr.SevenZipFile.return_value.__enter__ = Mock(return_value=mock_zf)
            mock_py7zr.SevenZipFile.return_value.__exit__ = Mock(return_value=False)

            def fake_extractall(path):
                dest = os.path.join(path, "test.bin")
                with open(dest, "wb") as f:
                    f.write(b"\x00" * 100)

            mock_zf.extractall = fake_extractall

            process_7zip_file(
                "/tmp/test.7z", False, "redb", logger, "all",
                decompile_modules=modules
            )

            if mock_process.called:
                call_kwargs = mock_process.call_args[1]
                assert call_kwargs["decompile_modules"] == modules

    def test_worker_unpacks_decompile_modules(self):
        """worker() correctly unpacks decompile_modules from args tuple."""
        from redb.workers import worker

        modules = {"strings", "cfg"}

        with patch('redb.workers.process_file') as mock_pf, \
             patch('redb.workers.signal'), \
             patch('redb.workers.gc'):
            mock_pf.return_value = (Mock(), "pebin")

            args = (
                "/tmp/test.bin",  # filepath
                True,             # decompile
                "redb",           # index_prefix
                "/tmp/log",       # log_file
                1,                # file_number
                10,               # total_files
                "all",            # selected_modules
                False,            # dry_run
                False,            # yara_scan
                False,            # with_yara
                False,            # force
                modules,          # decompile_modules
            )

            worker(args)

            mock_pf.assert_called_once()
            call_kwargs = mock_pf.call_args[1]
            assert call_kwargs["decompile_modules"] == modules


# ============================================================================
# BinaryNinjaDecompiler._module_selected() Tests
# ============================================================================

class TestModuleSelected:
    """Tests for BinaryNinjaDecompiler._module_selected() helper."""

    def _make_decompiler(self, decompile_modules):
        """Create a minimal BinaryNinjaDecompiler-like object for testing _module_selected."""

        class FakeDecompiler:
            def __init__(self, modules):
                self.decompile_modules = modules

            def _module_selected(self, module_name):
                return "all" in self.decompile_modules or module_name in self.decompile_modules

        return FakeDecompiler(decompile_modules)

    def test_all_selects_everything(self):
        d = self._make_decompiler({"all"})
        assert d._module_selected("strings") is True
        assert d._module_selected("decompilation") is True
        assert d._module_selected("disassembly") is True
        assert d._module_selected("cfg") is True
        assert d._module_selected("llil") is True

    def test_specific_module_selected(self):
        d = self._make_decompiler({"cfg", "strings"})
        assert d._module_selected("cfg") is True
        assert d._module_selected("strings") is True
        assert d._module_selected("decompilation") is False
        assert d._module_selected("disassembly") is False
        assert d._module_selected("llil") is False

    def test_empty_set_selects_nothing(self):
        d = self._make_decompiler(set())
        assert d._module_selected("strings") is False
        assert d._module_selected("decompilation") is False

    def test_single_module(self):
        d = self._make_decompiler({"llil"})
        assert d._module_selected("llil") is True
        assert d._module_selected("cfg") is False
        assert d._module_selected("strings") is False


# ============================================================================
# analyze_binary() Selective Execution Tests
# ============================================================================

class TestAnalyzeBinaryGating:
    """Tests that analyze_binary() gates extraction per decompile_modules.

    Uses a FakeDecompiler to test the gating logic without importing binaryninja.
    """

    def _make_analyze_binary_runner(self, decompile_modules):
        """Create a test harness that simulates the gating logic of analyze_binary()."""
        run_all = "all" in decompile_modules
        run_strings = run_all or "strings" in decompile_modules
        run_decompilation = run_all or "decompilation" in decompile_modules
        run_disassembly = run_all or "disassembly" in decompile_modules
        run_llil = run_all or "llil" in decompile_modules
        run_cfg = run_all or "cfg" in decompile_modules
        need_per_function = run_decompilation or run_disassembly or run_llil or run_cfg

        return {
            "run_strings": run_strings,
            "run_decompilation": run_decompilation,
            "run_disassembly": run_disassembly,
            "run_llil": run_llil,
            "run_cfg": run_cfg,
            "need_per_function": need_per_function,
        }

    def test_all_runs_everything(self):
        r = self._make_analyze_binary_runner({"all"})
        assert r["run_strings"] is True
        assert r["run_decompilation"] is True
        assert r["run_disassembly"] is True
        assert r["run_llil"] is True
        assert r["run_cfg"] is True
        assert r["need_per_function"] is True

    def test_strings_only_skips_per_function_loop(self):
        """Selecting only 'strings' should skip the per-function loop entirely."""
        r = self._make_analyze_binary_runner({"strings"})
        assert r["run_strings"] is True
        assert r["run_decompilation"] is False
        assert r["run_disassembly"] is False
        assert r["run_llil"] is False
        assert r["run_cfg"] is False
        assert r["need_per_function"] is False

    def test_cfg_only_runs_cfg_and_disassembly_in_loop(self):
        """Selecting only 'cfg' should run the per-function loop but skip decompilation/llil/strings."""
        r = self._make_analyze_binary_runner({"cfg"})
        assert r["run_strings"] is False
        assert r["run_decompilation"] is False
        assert r["run_disassembly"] is False  # Not selected (but backbone runs anyway in real code)
        assert r["run_llil"] is False
        assert r["run_cfg"] is True
        assert r["need_per_function"] is True

    def test_decompilation_only(self):
        r = self._make_analyze_binary_runner({"decompilation"})
        assert r["run_decompilation"] is True
        assert r["run_strings"] is False
        assert r["run_cfg"] is False
        assert r["run_llil"] is False
        assert r["need_per_function"] is True

    def test_multiple_modules(self):
        r = self._make_analyze_binary_runner({"cfg", "llil", "strings"})
        assert r["run_strings"] is True
        assert r["run_cfg"] is True
        assert r["run_llil"] is True
        assert r["run_decompilation"] is False
        assert r["run_disassembly"] is False
        assert r["need_per_function"] is True

    def test_disassembly_only(self):
        r = self._make_analyze_binary_runner({"disassembly"})
        assert r["run_disassembly"] is True
        assert r["run_decompilation"] is False
        assert r["run_strings"] is False
        assert r["run_cfg"] is False
        assert r["run_llil"] is False
        assert r["need_per_function"] is True


# ============================================================================
# prepare_export_data() Table Filtering Tests
# ============================================================================

class TestPrepareExportDataFiltering:
    """Tests that prepare_export_data() only includes tables for selected modules.

    Simulates the filtering logic from DecompileBinja.prepare_export_data()
    without importing binaryninja.
    """

    def _get_export_tables(self, decompile_modules):
        """Simulate the table selection logic from prepare_export_data()."""
        run_all = "all" in decompile_modules
        run_decompilation = run_all or "decompilation" in decompile_modules
        run_disassembly = run_all or "disassembly" in decompile_modules
        run_llil = run_all or "llil" in decompile_modules
        run_cfg = run_all or "cfg" in decompile_modules
        run_strings = run_all or "strings" in decompile_modules

        tables = set()
        if run_decompilation:
            tables.update(["decompiled_content", "decompiled_refs"])
        if run_disassembly:
            tables.update(["disassembled_content", "disassembled_refs", "function_similarity_metrics"])
        if run_llil:
            tables.update(["llil_content", "llil_refs"])
        if run_cfg:
            tables.update(["cfg_functions"])
        if run_strings:
            tables.update(["strings_raw"])
        # Errors always included if per-function loop ran
        if run_decompilation or run_disassembly or run_llil or run_cfg:
            tables.add("function_analysis_errors")

        return tables

    def test_all_includes_all_tables(self):
        tables = self._get_export_tables({"all"})
        assert "decompiled_content" in tables
        assert "decompiled_refs" in tables
        assert "disassembled_content" in tables
        assert "disassembled_refs" in tables
        assert "function_similarity_metrics" in tables
        assert "llil_content" in tables
        assert "llil_refs" in tables
        assert "cfg_functions" in tables
        assert "strings_raw" in tables
        assert "function_analysis_errors" in tables

    def test_strings_only_includes_only_strings(self):
        tables = self._get_export_tables({"strings"})
        assert tables == {"strings_raw"}

    def test_cfg_only_includes_cfg_and_errors(self):
        tables = self._get_export_tables({"cfg"})
        assert tables == {"cfg_functions", "function_analysis_errors"}

    def test_decompilation_only_tables(self):
        tables = self._get_export_tables({"decompilation"})
        assert tables == {"decompiled_content", "decompiled_refs", "function_analysis_errors"}

    def test_disassembly_only_tables(self):
        tables = self._get_export_tables({"disassembly"})
        assert tables == {
            "disassembled_content", "disassembled_refs",
            "function_similarity_metrics", "function_analysis_errors"
        }

    def test_llil_only_tables(self):
        tables = self._get_export_tables({"llil"})
        assert tables == {"llil_content", "llil_refs", "function_analysis_errors"}

    def test_combined_cfg_strings_tables(self):
        tables = self._get_export_tables({"cfg", "strings"})
        assert tables == {"cfg_functions", "strings_raw", "function_analysis_errors"}

    def test_no_errors_table_for_strings_only(self):
        """Error table should NOT be included when only strings is selected (no per-function loop)."""
        tables = self._get_export_tables({"strings"})
        assert "function_analysis_errors" not in tables


# ============================================================================
# DecompileBinja Parameter Acceptance Tests
# ============================================================================

class TestDecompileBinjaDecompileModules:
    """Tests that DecompileBinja accepts and stores decompile_modules.

    Since DecompileBinja imports binaryninja (which requires blake3 etc),
    we test the default/init logic in isolation.
    """

    def test_default_decompile_modules(self):
        """decompile_modules defaults to {'all'} when None."""
        modules = None
        result = modules or {"all"}
        assert result == {"all"}

    def test_explicit_decompile_modules(self):
        """Explicit decompile_modules is preserved."""
        modules = {"cfg", "llil"}
        result = modules or {"all"}
        assert result == {"cfg", "llil"}

    def test_empty_set_becomes_all(self):
        """Empty set is falsy and defaults to {'all'}."""
        modules = set()
        result = modules or {"all"}
        assert result == {"all"}


# ============================================================================
# Integration-Style: analyze_binary() Per-Function Gating (Logic Tests)
# ============================================================================

class TestAnalyzeBinaryPerFunctionGating:
    """Test that the per-function extraction gating produces correct results structures.

    These test the logic patterns from analyze_binary() using mock data,
    verifying that:
    - Unselected modules produce empty result lists
    - Selected modules produce populated result lists
    - Disassembly always runs when any per-function module is selected
    - Cross-linkage None handling works when counterparts are skipped
    """

    def _simulate_per_function_results(self, decompile_modules, num_functions=3):
        """Simulate the per-function extraction loop from analyze_binary().

        Returns results dict with the same structure as analyze_binary().
        """
        run_all = "all" in decompile_modules
        run_strings = run_all or "strings" in decompile_modules
        run_decompilation = run_all or "decompilation" in decompile_modules
        run_disassembly = run_all or "disassembly" in decompile_modules
        run_llil = run_all or "llil" in decompile_modules
        run_cfg = run_all or "cfg" in decompile_modules
        need_per_function = run_decompilation or run_disassembly or run_llil or run_cfg

        results = {
            "decompiled": [],
            "disassembled": [],
            "cfg": [],
            "llil": [],
            "errors": [],
            "strings": [],
        }

        if run_strings:
            results["strings"] = [{"string": f"str_{i}"} for i in range(5)]

        if not need_per_function:
            return results

        for i in range(num_functions):
            hlil_json = {"decompiled_function_hash": f"hlil_{i}"} if run_decompilation else None
            disass_json = {"disassembled_function_hash": f"disass_{i}", "disassembled_function_name": f"func_{i}", "disassembled_function_address": i * 100}  # always
            cfg_json = {"function_address": i * 100, "cyclomatic_complexity": 5} if run_cfg else None
            lowlevel_json = {"sha256_llil": f"llil_{i}", "tlsh_llil": "def", "minhash": [1, 2]} if run_llil else None

            # Simulate cross-linkage (same pattern as real code)
            if hlil_json and disass_json:
                hlil_json["disassembled_function_hash"] = disass_json["disassembled_function_hash"]
                disass_json["decompiled_function_hash"] = hlil_json["decompiled_function_hash"]
                results["decompiled"].append(hlil_json)
                if run_disassembly:
                    results["disassembled"].append(disass_json)
            elif hlil_json:
                hlil_json["disassembled_function_hash"] = None
                results["decompiled"].append(hlil_json)
            elif disass_json:
                disass_json["decompiled_function_hash"] = None
                if run_disassembly:
                    results["disassembled"].append(disass_json)

            if lowlevel_json and disass_json:
                lowlevel_json["disassembled_function_hash"] = disass_json["disassembled_function_hash"]
                disass_json["tlsh_llil"] = lowlevel_json.get("tlsh_llil")
                disass_json["minhash"] = lowlevel_json.get("minhash")
            elif lowlevel_json:
                lowlevel_json["disassembled_function_hash"] = None
            elif disass_json:
                disass_json["tlsh_llil"] = None
                disass_json["minhash"] = None

            if lowlevel_json:
                results["llil"].append(lowlevel_json)

            if cfg_json and disass_json:
                cfg_json["disassembled_function_hash"] = disass_json["disassembled_function_hash"]
                disass_json["cyclomatic_complexity"] = cfg_json.get("cyclomatic_complexity")
                results["cfg"].append(cfg_json)
            elif cfg_json:
                cfg_json["disassembled_function_hash"] = None
                results["cfg"].append(cfg_json)

            if disass_json and "cyclomatic_complexity" not in disass_json:
                disass_json["cyclomatic_complexity"] = None

        return results

    def test_all_populates_everything(self):
        r = self._simulate_per_function_results({"all"}, 3)
        assert len(r["decompiled"]) == 3
        assert len(r["disassembled"]) == 3
        assert len(r["cfg"]) == 3
        assert len(r["llil"]) == 3
        assert len(r["strings"]) == 5

    def test_strings_only_populates_strings(self):
        r = self._simulate_per_function_results({"strings"}, 3)
        assert len(r["strings"]) == 5
        assert len(r["decompiled"]) == 0
        assert len(r["disassembled"]) == 0
        assert len(r["cfg"]) == 0
        assert len(r["llil"]) == 0

    def test_cfg_only_populates_cfg_no_disassembly_export(self):
        """With only 'cfg' selected, cfg list is populated but disassembled is empty
        (disassembly runs internally but not exported)."""
        r = self._simulate_per_function_results({"cfg"}, 3)
        assert len(r["cfg"]) == 3
        assert len(r["disassembled"]) == 0  # Not selected for export
        assert len(r["decompiled"]) == 0
        assert len(r["llil"]) == 0
        assert len(r["strings"]) == 0

    def test_cfg_has_disassembled_function_hash_linkage(self):
        """CFG entries get disassembled_function_hash from backbone disassembly."""
        r = self._simulate_per_function_results({"cfg"}, 2)
        for cfg in r["cfg"]:
            assert cfg["disassembled_function_hash"] is not None
            assert cfg["disassembled_function_hash"].startswith("disass_")

    def test_decompilation_only_has_none_disassembly_linkage_when_no_disasm(self):
        """When only decompilation selected, disassembled still runs (backbone)
        so linkage is still available."""
        r = self._simulate_per_function_results({"decompilation"}, 2)
        assert len(r["decompiled"]) == 2
        # Disassembly runs as backbone, so linkage hash is present
        for d in r["decompiled"]:
            assert d["disassembled_function_hash"] is not None

    def test_disassembly_without_llil_has_none_fuzzy_hashes(self):
        """When LLIL is not selected, disassembly records have None fuzzy hashes."""
        r = self._simulate_per_function_results({"disassembly"}, 2)
        for d in r["disassembled"]:
            assert d["tlsh_llil"] is None
            assert d["minhash"] is None

    def test_disassembly_without_decompilation_has_none_decompiled_hash(self):
        """When decompilation is not selected, disassembly has None decompiled_function_hash."""
        r = self._simulate_per_function_results({"disassembly"}, 2)
        for d in r["disassembled"]:
            assert d["decompiled_function_hash"] is None

    def test_disassembly_without_cfg_has_none_cyclomatic(self):
        """When CFG is not selected, disassembly has None cyclomatic_complexity."""
        r = self._simulate_per_function_results({"disassembly"}, 2)
        for d in r["disassembled"]:
            assert d["cyclomatic_complexity"] is None

    def test_all_linkage_populated(self):
        """When all modules run, all cross-linkage fields are populated."""
        r = self._simulate_per_function_results({"all"}, 2)
        for d in r["disassembled"]:
            assert d["decompiled_function_hash"] is not None
            assert d["tlsh_llil"] is not None
            assert d["cyclomatic_complexity"] is not None
        for h in r["decompiled"]:
            assert h["disassembled_function_hash"] is not None
        for c in r["cfg"]:
            assert c["disassembled_function_hash"] is not None
        for ll in r["llil"]:
            assert ll["disassembled_function_hash"] is not None


# ============================================================================
# IOC Extraction Gating by decompile_modules
# ============================================================================

class TestIOCExtractionGating:
    """Tests that IOC extraction only runs when its data sources are present.

    IOCExtractorFromResults consumes in-memory analysis_results['strings']
    and analysis_results['decompiled']. It runs automatically (implicit
    dependency) when 'decompilation' or 'strings' modules produce data.
    It is NOT a standalone selectable module.
    """

    @staticmethod
    def _is_ioc_relevant(decompile_modules):
        """Replicate the gating logic from workers.py."""
        return (
            not decompile_modules
            or "all" in decompile_modules
            or "decompilation" in decompile_modules
            or "strings" in decompile_modules
        )

    def test_all_triggers_ioc(self):
        assert self._is_ioc_relevant({"all"}) is True

    def test_decompilation_triggers_ioc(self):
        assert self._is_ioc_relevant({"decompilation"}) is True

    def test_strings_triggers_ioc(self):
        assert self._is_ioc_relevant({"strings"}) is True

    def test_decompilation_and_strings_triggers_ioc(self):
        assert self._is_ioc_relevant({"decompilation", "strings"}) is True

    def test_cfg_only_skips_ioc(self):
        assert self._is_ioc_relevant({"cfg"}) is False

    def test_disassembly_only_skips_ioc(self):
        assert self._is_ioc_relevant({"disassembly"}) is False

    def test_llil_only_skips_ioc(self):
        assert self._is_ioc_relevant({"llil"}) is False

    def test_cfg_and_disassembly_skips_ioc(self):
        assert self._is_ioc_relevant({"cfg", "disassembly"}) is False

    def test_cfg_and_llil_skips_ioc(self):
        assert self._is_ioc_relevant({"cfg", "llil"}) is False

    def test_cfg_and_decompilation_triggers_ioc(self):
        """If decompilation is included alongside cfg, IOC should run."""
        assert self._is_ioc_relevant({"cfg", "decompilation"}) is True

    def test_disassembly_and_strings_triggers_ioc(self):
        """If strings is included alongside disassembly, IOC should run."""
        assert self._is_ioc_relevant({"disassembly", "strings"}) is True

    def test_none_modules_triggers_ioc(self):
        """When decompile_modules is None (default), IOC should run."""
        assert self._is_ioc_relevant(None) is True

    def test_empty_set_triggers_ioc(self):
        """When decompile_modules is empty set, IOC should run (falsy)."""
        assert self._is_ioc_relevant(set()) is True