Igor N. Berezovsky

20 papers Journal 20
YearRankTypeTitle / Venue / Authors
2023 J jnl
AlloMAPS 2: allosteric fingerprints of the AlphaFold and Pfam-trRosetta predicted structures for engineering and design.
Nucleic Acids Res.
Zhen Wah Tan, Wei-Ven Tee, Enrico Guarnera, Igor N. Berezovsky
2021 J jnl
Deriving and Using Descriptors of Elementary Functions in Rational Protein Design.
Frontiers Bioinform.
Melvin Yin, Alexander Goncearenco, Igor N. Berezovsky
2020 J jnl
AlloSigMA 2: paving the way to designing allosteric effectors and to exploring allosteric effects of mutations.
Nucleic Acids Res.
Zhen Wah Tan, Enrico Guarnera, Wei-Ven Tee, Igor N. Berezovsky
2019 J jnl
AlloMAPS: allosteric mutation analysis and polymorphism of signaling database.
Nucleic Acids Res.
Zhen Wah Tan, Wei-Ven Tee, Enrico Guarnera, Lauren Booth, Igor N. Berezovsky
2018 J jnl
Exploring chromatin hierarchical organization via Markov State Modelling.
PLoS Comput. Biol.
Zhen Wah Tan, Enrico Guarnera, Igor N. Berezovsky
2018 J jnl
Reversing allosteric communication: From detecting allosteric sites to inducing and tuning targeted allosteric response.
PLoS Comput. Biol.
Wei-Ven Tee, Enrico Guarnera, Igor N. Berezovsky
2017 J jnl
AlloSigMA: allosteric signaling and mutation analysis server.
Bioinform.
Enrico Guarnera, Zhen Wah Tan, Zejun Zheng, Igor N. Berezovsky
2016 J jnl
Nucleotide binding database NBDB - a collection of sequence motifs with specific protein-ligand interactions.
Nucleic Acids Res.
Zejun Zheng, Alexander Goncearenco, Igor N. Berezovsky
2016 J jnl
Structure-Based Statistical Mechanical Model Accounts for the Causality and Energetics of Allosteric Communication.
PLoS Comput. Biol.
Enrico Guarnera, Igor N. Berezovsky
2013 J jnl
SPACER: server for predicting allosteric communication and effects of regulation.
Nucleic Acids Res.
Alexander Goncearenco, Simon Mitternacht, Taipang Yong, Birgit Eisenhaber, Frank Eisenhaber, Igor N. Berezovsky
2011 J jnl
Binding Leverage as a Molecular Basis for Allosteric Regulation.
PLoS Comput. Biol.
Simon Mitternacht, Igor N. Berezovsky
2011 J jnl
Coherent Conformational Degrees of Freedom as a Structural Basis for Allosteric Communication.
PLoS Comput. Biol.
Simon Mitternacht, Igor N. Berezovsky
2011 J jnl
Computational reconstruction of primordial prototypes of elementary functional loops in modern proteins.
Bioinform.
Alexander Goncearenco, Igor N. Berezovsky
2010 J jnl
Prototypes of elementary functional loops unravel evolutionary connections between protein functions.
Bioinform.
Alexander Goncearenco, Igor N. Berezovsky
2008 J jnl
Domain Hierarchy and closed Loops (DHcL): a server for exploring hierarchy of protein domain structure.
Nucleic Acids Res.
Grzegorz Koczyk, Igor N. Berezovsky
2007 J jnl
Positive and Negative Design in Stability and Thermal Adaptation of Natural Proteins.
PLoS Comput. Biol.
Igor N. Berezovsky, Konstantin B. Zeldovich, Eugene I. Shakhnovich
2007 J jnl
Protein and DNA Sequence Determinants of Thermophilic Adaptation.
PLoS Comput. Biol.
Konstantin B. Zeldovich, Igor N. Berezovsky, Eugene I. Shakhnovich
2006 J jnl
Application of a sensitive collection heuristic for very large protein families: Evolutionary relationship between adipose triglyceride lipase (ATGL) and classic mammalian lipases.
BMC Bioinform.
Georg Schneider, Georg Neuberger, Michael Wildpaner, Sun Tian, Igor N. Berezovsky, Frank Eisenhaber
2005 J jnl
Entropic Stabilization of Proteins and Its Proteomic Consequences.
PLoS Comput. Biol.
Igor N. Berezovsky, William W. Chen, Paul J. Choi, Eugene I. Shakhnovich
2000 J jnl
Hierarchy of Regions of Amino Acid Sequence with Respect to Their Role in the Protein Spatial Structure.
J. Comput. Biol.
Igor N. Berezovsky, Natalia G. Esipova, Vladimir G. Tumanyan