Igor N. Berezovsky

20 papers Journal 20

Year	Rank	Type	Title / Venue / Authors
2023	J	`jnl`	AlloMAPS 2: allosteric fingerprints of the AlphaFold and Pfam-trRosetta predicted structures for engineering and design. Nucleic Acids Res. Zhen Wah Tan, Wei-Ven Tee, Enrico Guarnera, Igor N. Berezovsky
2021	J	`jnl`	Deriving and Using Descriptors of Elementary Functions in Rational Protein Design. Frontiers Bioinform. Melvin Yin, Alexander Goncearenco, Igor N. Berezovsky
2020	J	`jnl`	AlloSigMA 2: paving the way to designing allosteric effectors and to exploring allosteric effects of mutations. Nucleic Acids Res. Zhen Wah Tan, Enrico Guarnera, Wei-Ven Tee, Igor N. Berezovsky
2019	J	`jnl`	AlloMAPS: allosteric mutation analysis and polymorphism of signaling database. Nucleic Acids Res. Zhen Wah Tan, Wei-Ven Tee, Enrico Guarnera, Lauren Booth, Igor N. Berezovsky
2018	J	`jnl`	Exploring chromatin hierarchical organization via Markov State Modelling. PLoS Comput. Biol. Zhen Wah Tan, Enrico Guarnera, Igor N. Berezovsky
2018	J	`jnl`	Reversing allosteric communication: From detecting allosteric sites to inducing and tuning targeted allosteric response. PLoS Comput. Biol. Wei-Ven Tee, Enrico Guarnera, Igor N. Berezovsky
2017	J	`jnl`	AlloSigMA: allosteric signaling and mutation analysis server. Bioinform. Enrico Guarnera, Zhen Wah Tan, Zejun Zheng, Igor N. Berezovsky
2016	J	`jnl`	Nucleotide binding database NBDB - a collection of sequence motifs with specific protein-ligand interactions. Nucleic Acids Res. Zejun Zheng, Alexander Goncearenco, Igor N. Berezovsky
2016	J	`jnl`	Structure-Based Statistical Mechanical Model Accounts for the Causality and Energetics of Allosteric Communication. PLoS Comput. Biol. Enrico Guarnera, Igor N. Berezovsky
2013	J	`jnl`	SPACER: server for predicting allosteric communication and effects of regulation. Nucleic Acids Res. Alexander Goncearenco, Simon Mitternacht, Taipang Yong, Birgit Eisenhaber, Frank Eisenhaber, Igor N. Berezovsky
2011	J	`jnl`	Binding Leverage as a Molecular Basis for Allosteric Regulation. PLoS Comput. Biol. Simon Mitternacht, Igor N. Berezovsky
2011	J	`jnl`	Coherent Conformational Degrees of Freedom as a Structural Basis for Allosteric Communication. PLoS Comput. Biol. Simon Mitternacht, Igor N. Berezovsky
2011	J	`jnl`	Computational reconstruction of primordial prototypes of elementary functional loops in modern proteins. Bioinform. Alexander Goncearenco, Igor N. Berezovsky
2010	J	`jnl`	Prototypes of elementary functional loops unravel evolutionary connections between protein functions. Bioinform. Alexander Goncearenco, Igor N. Berezovsky
2008	J	`jnl`	Domain Hierarchy and closed Loops (DHcL): a server for exploring hierarchy of protein domain structure. Nucleic Acids Res. Grzegorz Koczyk, Igor N. Berezovsky
2007	J	`jnl`	Positive and Negative Design in Stability and Thermal Adaptation of Natural Proteins. PLoS Comput. Biol. Igor N. Berezovsky, Konstantin B. Zeldovich, Eugene I. Shakhnovich
2007	J	`jnl`	Protein and DNA Sequence Determinants of Thermophilic Adaptation. PLoS Comput. Biol. Konstantin B. Zeldovich, Igor N. Berezovsky, Eugene I. Shakhnovich
2006	J	`jnl`	Application of a sensitive collection heuristic for very large protein families: Evolutionary relationship between adipose triglyceride lipase (ATGL) and classic mammalian lipases. BMC Bioinform. Georg Schneider, Georg Neuberger, Michael Wildpaner, Sun Tian, Igor N. Berezovsky, Frank Eisenhaber
2005	J	`jnl`	Entropic Stabilization of Proteins and Its Proteomic Consequences. PLoS Comput. Biol. Igor N. Berezovsky, William W. Chen, Paul J. Choi, Eugene I. Shakhnovich
2000	J	`jnl`	Hierarchy of Regions of Amino Acid Sequence with Respect to Their Role in the Protein Spatial Structure. J. Comput. Biol. Igor N. Berezovsky, Natalia G. Esipova, Vladimir G. Tumanyan