Igor M. Sokolov

13 papers Journal 10Unranked 2
YearRankTypeTitle / Venue / Authors
2023 J jnl
Biosyst.
Suman Bhowmick, Igor M. Sokolov, Hartmut H. K. Lentz
2022 J jnl
CoRR
Leonardo B. L. Santos, Luiz Max Carvalho, Giovanni Guarnieri Soares, Leonardo Nascimento Ferreira, Igor M. Sokolov
2020 J jnl
CoRR
Fabian Baumann, Philipp Lorenz-Spreen, Igor M. Sokolov, Michele Starnini
2019 J jnl
CoRR
Fabian Baumann, Philipp Lorenz-Spreen, Igor M. Sokolov, Michele Starnini
2018 J jnl
J. Comput. Phys.
Gianluca Boccardo, Igor M. Sokolov, Amir Paster
2018 J jnl
CoRR
Flavio Iannelli, Manuel Sebastian Mariani, Igor M. Sokolov
2015 J jnl
Comput. Phys. Commun.
Bartlomiej Dybiec, Igor M. Sokolov
2012 J jnl
CoRR
Franziska Flegel, Igor M. Sokolov
2012 J jnl
CoRR
Hartmut Lentz, Thomas Selhorst, Igor M. Sokolov
2009 ch.
Encyclopedia of Complexity and Systems Science
Igor M. Sokolov
2008 conf
VALUETOOLS
Joseph Klafter, Igor M. Sokolov
2008 conf
VALUETOOLS
Igor M. Sokolov, Ariel Lubelski, Joseph Klafter
2007 J jnl
Biosyst.
T. Verechtchaguina, Igor M. Sokolov, Lutz Schimansky-Geier
redb/logging_utils.py
← Index redb/logging_utils.py python
"""
Logging utilities and shared enums for REDB.

Contains the ImportResult enum, log formatters, and logger setup functions
used across the ingestor pipeline.
"""
import logging
from logging.handlers import QueueHandler
import os
from enum import Enum


class ImportResult(Enum):
    CORRECTLY = 0
    PARTIALLY = 1
    FAILED = 2
    PENDING = 3
    SKIPPED = 4


class FileNameFormatter(logging.Formatter):
    def format(self, record):
        record.filenameinfo = getattr(record, "filenameinfo", "unknown")
        return super().format(record)


def setup_logger(log_queue, filename):
    logger = logging.getLogger(filename)
    if not logger.handlers:
        if os.getenv("SERVER_ENV") == "prod":
            logger.setLevel(logging.INFO)
        else:
            logger.setLevel(logging.DEBUG)
        handler = QueueHandler(log_queue)
        logger.addHandler(handler)
        logger.propagate = False  # Prevent propagation to parent loggers
    return logger


def logger_thread(log_queue, log_file):
    handler = logging.FileHandler(log_file)
    formatter = FileNameFormatter(
        "%(asctime)s - %(filenameinfo)s - %(levelname)s - %(message)s"
    )
    handler.setFormatter(formatter)

    while True:
        try:
            record = log_queue.get()
            if record is None:
                break
            # Format and write the log record
            message = formatter.format(record)
            handler.stream.write(message + "\n")
            handler.stream.flush()
        except Exception:
            import traceback
            import sys

            print("[ERR] Error in logger thread:", file=sys.stderr)
            traceback.print_exc(file=sys.stderr)


def setup_direct_logger(log_file, filename, pid=None):
    """Setup a logger that writes directly to the log file without using a queue."""
    # Create a unique logger name using the process ID
    logger_name = f"{filename}_{pid}" if pid else filename
    logger = logging.getLogger(logger_name)

    if not logger.handlers:
        handler = logging.FileHandler(log_file)
        formatter = logging.Formatter("%(asctime)s - %(filenameinfo)s - %(levelname)s - %(message)s")
        handler.setFormatter(formatter)
        logger.addHandler(handler)

        if os.getenv("SERVER_ENV") == "prod":
            logger.setLevel(logging.INFO)
        else:
            logger.setLevel(logging.DEBUG)

    # Add filename info to the logger's extra info
    extra = {"filenameinfo": filename}
    logger = logging.LoggerAdapter(logger, extra)

    return logger