Igor Jurisica

83 papers A* 3A 3B 1C 4Misc 2Journal 48Unranked 12
YearRankTypeTitle / Venue / Authors
2023 J jnl
MirDIP 5.2: tissue context annotation and novel microRNA curation.
Nucleic Acids Res.
Anne-Christin Hauschild, Chiara Pastrello, Gitta Kirana Anindya Ekaputeri, Dylan Bethune-Waddell, Mark Abovsky, Zuhaib Ahmed, Max Kotlyar, Richard Lu, Igor Jurisica
2022 J jnl
IID 2021: towards context-specific protein interaction analyses by increased coverage, enhanced annotation and enrichment analysis.
Nucleic Acids Res.
Max Kotlyar, Chiara Pastrello, Zuhaib Ahmed, Justin Chee, Zofia Varyova, Igor Jurisica
2022 J jnl
Information fusion as an integrative cross-cutting enabler to achieve robust, explainable, and trustworthy medical artificial intelligence.
Inf. Fusion
Andreas Holzinger, Matthias Dehmer, Frank Emmert-Streib, Rita Cucchiara, Isabelle Augenstein, Javier Del Ser, Wojciech Samek, Igor Jurisica, Natalia Díaz Rodríguez
2022 J jnl
Pathway integration and annotation: building a puzzle with non-matching pieces and no reference picture.
Briefings Bioinform.
Giuseppe Agapito, Chiara Pastrello, Yun Niu, Igor Jurisica
2022 J jnl
miRAnno - network-based functional microRNA annotation.
Bioinform.
Tomás Tokár, Chiara Pastrello, Mark Abovsky, Sara Rahmati, Igor Jurisica
2021 J jnl
Comprehensive pathway enrichment analysis workflows: COVID-19 case study.
Briefings Bioinform.
Giuseppe Agapito, Chiara Pastrello, Igor Jurisica
2020 J jnl
BioPAX-Parser: parsing and enrichment analysis of BioPAX pathways.
Bioinform.
Giuseppe Agapito, Chiara Pastrello, Pietro Hiram Guzzi, Igor Jurisica, Mario Cannataro
2020 J jnl
GSOAP: a tool for visualization of gene set over-representation analysis.
Bioinform.
Tomás Tokár, Chiara Pastrello, Igor Jurisica
2020 — ch.
Informed Use of Protein-Protein Interaction Data: A Focus on the Integrated Interactions Database (IID).
Protein-Protein Interaction Networks
Chiara Pastrello, Max Kotlyar, Igor Jurisica
2020 J jnl
The IMEx coronavirus interactome: an evolving map of Coronaviridae-host molecular interactions.
Database J. Biol. Databases Curation
Livia Perfetto, Chiara Pastrello, Noemi del-Toro, Margaret J. Duesbury, Marta Iannuccelli, Max Kotlyar, Luana Licata, Birgit Meldal, Kalpana Panneerselvam, Simona Panni, N. Rahimzadeh, Sylvie Ricard-Blum, Lukasz Salwínski, Anjali Shrivastava, Gianni Cesareni, Matteo Pellegrini, Sandra E. Orchard, Igor Jurisica, Henning Hermjakob, Pablo Porras
2020 J jnl
pathDIP 4: an extended pathway annotations and enrichment analysis resource for human, model organisms and domesticated species.
Nucleic Acids Res.
Sara Rahmati, Mark Abovsky, Chiara Pastrello, Max Kotlyar, Richard Lu, Christian A. Cumbaa, Proton Rahman, Vinod Chandran, Igor Jurisica
2019 J jnl
IID 2018 update: context-specific physical protein-protein interactions in human, model organisms and domesticated species.
Nucleic Acids Res.
Max Kotlyar, Chiara Pastrello, Zara Malik, Igor Jurisica
2019 — ch.
Protein-Protein Interaction Databases.
Encyclopedia of Bioinformatics and Computational Biology (1)
Max Kotlyar, Chiara Pastrello, Andrea E. M. Rossos, Igor Jurisica
2019 — ch.
Two Decades of Biological Pathway Databases: Results and Challenges.
Encyclopedia of Bioinformatics and Computational Biology (1)
Sara Rahmati, Chiara Pastrello, Andrea E. M. Rossos, Igor Jurisica
2019 — ch.
Visualization of Biomedical Networks.
Encyclopedia of Bioinformatics and Computational Biology (1)
Anne-Christin Hauschild, Chiara Pastrello, Andrea E. M. Rossos, Igor Jurisica
2018 — conf
Data-driven medicine: promise and challenges.
CASCON
Tomás Tokár, Igor Jurisica, Naomi P. Visanji, Christian Veillette
2018 J jnl
Encompassing new use cases - level 3.0 of the HUPO-PSI format for molecular interactions.
BMC Bioinform.
M. Sivade Dumousseau, Diego Alonso-López, Mais G. Ammari, Glyn Bradley, Nancy H. Campbell, Arnaud Céol, Gianni Cesareni, Colin W. Combe, Javier De Las Rivas, Noemi del-Toro, Joshua Heimbach, Henning Hermjakob, Igor Jurisica, Maximilian Koch, Luana Licata, Ruth C. Lovering, David J. Lynn, Birgit H. M. Meldal, Gos Micklem, Simona Panni, Pablo Porras, Sylvie Ricard-Blum, Bernd Roechert, Lukasz Salwínski, Anjali Shrivastava, Julie M. Sullivan, Nicolas Thierry-Mieg, Yo Yehudi, Kim Van Roey, Sandra E. Orchard
2018 A* conf
SDREGION: Fast Spotting of Changing Communities in Biological Networks.
KDD
Serene W. H. Wong, Chiara Pastrello, Max Kotlyar, Christos Faloutsos, Igor Jurisica
2018 J jnl
mirDIP 4.1 - integrative database of human microRNA target predictions.
Nucleic Acids Res.
Tomás Tokár, Chiara Pastrello, Andrea E. M. Rossos, Mark Abovsky, Anne-Christin Hauschild, Mike Tsay, Richard Lu, Igor Jurisica
2017 — conf
Big data analytics: challenges and applications to health care.
CASCON
Serene Wong, Igor Jurisica
2017 J jnl
pathDIP: an annotated resource for known and predicted human gene-pathway associations and pathway enrichment analysis.
Nucleic Acids Res.
Sara Rahmati, Mark Abovsky, Chiara Pastrello, Igor Jurisica
2016 A conf
A Simulated Annealing Algorithm for Maximum Common Edge Subgraph Detection in Biological Networks.
GECCO
Simon J. Larsen, Frederik G. Alkærsig, Henrik J. Ditzel, Igor Jurisica, Nicolas Alcaraz, Jan Baumbach
2016 J jnl
Integrated interactions database: tissue-specific view of the human and model organism interactomes.
Nucleic Acids Res.
Max Kotlyar, Chiara Pastrello, Nicholas Sheahan, Igor Jurisica
2016 — ch.
Machine Learning for In Silico Modeling of Tumor Growth.
Machine Learning for Health Informatics
Fleur Jeanquartier, Claire Jean-Quartier, Max Kotlyar, Tomás Tokár, Anne-Christin Hauschild, Igor Jurisica, Andreas Holzinger
2016 J jnl
Robust quantitative scratch assay.
Bioinform.
Andrea Vargas, Marc Angeli, Chiara Pastrello, Rosanne McQuaid, Han Li, Andrea Jurisicova, Igor Jurisica
2015 J jnl
Prioritizing Therapeutics for Lung Cancer: An Integrative Meta-analysis of Cancer Gene Signatures and Chemogenomic Data.
PLoS Comput. Biol.
Kristen Fortney, Joshua Griesman, Max Kotlyar, Chiara Pastrello, Marc Angeli, Ming-Sound Tsao, Igor Jurisica
2015 J jnl
Where are we at regarding species translation? A review of the sbv IMPROVER challenge.
Bioinform.
Julia Hoeng, Manuel C. Peitsch, Pablo Meyer, Igor Jurisica
2014 — book
Interactive Knowledge Discovery and Data Mining in Biomedical Informatics - State-of-the-Art and Future Challenges
Interactive Knowledge Discovery and Data Mining in Biomedical Informatics
Andreas Holzinger, Igor Jurisica
2014 — ch.
Knowledge Discovery and Data Mining in Biomedical Informatics: The Future Is in Integrative, Interactive Machine Learning Solutions.
Interactive Knowledge Discovery and Data Mining in Biomedical Informatics
Andreas Holzinger, Igor Jurisica
2014 J jnl
Knowledge Discovery and interactive Data Mining in Bioinformatics - State-of-the-Art, future challenges and research directions.
BMC Bioinform.
Andreas Holzinger, Matthias Dehmer, Igor Jurisica
2014 — ch.
Visual Data Mining: Effective Exploration of the Biological Universe.
Interactive Knowledge Discovery and Data Mining in Biomedical Informatics
David Otasek, Chiara Pastrello, Andreas Holzinger, Igor Jurisica
2013 — ed.
Data Integration in the Life Sciences - 9th International Conference, DILS 2013, Montreal, QC, Canada, July 11-12, 2013. Proceedings
DILS
Christopher J. O. Baker, Greg Butler, Igor Jurisica
2013 J jnl
NetwoRx: connecting drugs to networks and phenotypes in
Nucleic Acids Res.
Kristen Fortney, Wing Xie, Max Kotlyar, Joshua Griesman, Yulia Kotseruba, Igor Jurisica
2013 J jnl
Novel semantic similarity measure improves an integrative approach to predicting gene functional associations.
BMC Syst. Biol.
Fatemeh Vafaee, Daniela Rosu, Fiona Broackes-Carter, Igor Jurisica
2013 J jnl
Visual Data Mining of Biological Networks: One Size Does Not Fit All.
PLoS Comput. Biol.
Chiara Pastrello, David Otasek, Kristen Fortney, Giuseppe Agapito, Mario Cannataro, Elize Shirdel, Igor Jurisica
2012 A* conf
Construction of New Medicines via Game Proof Search.
AAAI
Abraham Heifets, Igor Jurisica
2012 J jnl
SCRIPDB: a portal for easy access to syntheses, chemicals and reactions in patents.
Nucleic Acids Res.
Abraham Heifets, Igor Jurisica
2011 J jnl
A tree-based approach for motif discovery and sequence classification.
Bioinform.
Rui Yan, Paul C. Boutros, Igor Jurisica
2011 J jnl
Cancer Computational Biology.
BMC Bioinform.
Zohar Yakhini, Igor Jurisica
2011 J jnl
Ensembles of case-based reasoning classifiers in high-dimensional biological domains.
WIREs Data Mining Knowl. Discov.
Niloofar Arshadi, Igor Jurisica
2011 J jnl
NAViGaTOR: Large Scalable and Interactive Navigation and Analysis of Large Graphs.
Internet Math.
Amira Djebbari, Muhammad Ali, David Otasek, Max Kotlyar, Kristen Fortney, Serene Wong, Anthony Hrvojic, Igor Jurisica
2011 — conf
Next-generation, scalable network visualization and analysis.
CASCON
Amira Djebbari, Igor Jurisica
2011 J jnl
Optimized application of penalized regression methods to diverse genomic data.
Bioinform.
Levi Waldron, Melania Pintilie, Ming-Sound Tsao, Frances A. Shepherd, Curtis Huttenhower, Igor Jurisica
2010 J jnl
Evaluation of linguistic features useful in extraction of interactions from PubMed; Application to annotating known, high-throughput and predicted interactions in I
Bioinform.
Yun Niu, David Otasek, Igor Jurisica
2010 C conf
Runtime Estimation Using the Case-Based Reasoning Approach for Scheduling in a Grid Environment.
ICCBR
Edward Xia, Igor Jurisica, Julie Waterhouse, Valerie Sloan
2010 J jnl
The FlowVizMenu and Parallel Scatterplot Matrix: Hybrid Multidimensional Visualizations for Network Exploration.
IEEE Trans. Vis. Comput. Graph.
Christophe Viau, Michael J. McGuffin, Yves Chiricota, Igor Jurisica
2009 J jnl
Interaction Techniques for Selecting and Manipulating Subgraphs in Network Visualizations.
IEEE Trans. Vis. Comput. Graph.
Michael J. McGuffin, Igor Jurisica
2009 J jnl
NAViGaTOR: Network Analysis, Visualization and Graphing Toronto.
Bioinform.
Kevin R. Brown, David Otasek, Muhammad Ali, Michael J. McGuffin, Wing Xie, Baiju Devani, Ian Lawson van Toch, Igor Jurisica
2009 — conf
The KBMS Project and Beyond.
Conceptual Modeling: Foundations and Applications
Vinay K. Chaudhri, Igor Jurisica, Manolis Koubarakis, Dimitris Plexousakis, Thodoros Topaloglou
2008 C conf
Detecting Protein-Protein Interaction Sentences Using a Mixture Model.
NLDB
Yun Niu, Igor Jurisica
2007 Misc conf
Comparison of Machine Learning and Pattern Discovery Algorithms for the Prediction of Human Single Nucleotide Polymorphisms.
GrC
Rui Yan, Paul C. Boutros, Igor Jurisica, Linda Z. Penn
2006 — conf
CasSim: a top-level-simulator for grid scheduling and applications.
CASCON
Edward Xia, Igor Jurisica, Julie Waterhouse
2006 J jnl
Efficient estimation of graphlet frequency distributions in protein-protein interaction networks.
Bioinform.
Natasa Przulj, Derek G. Corneil, Igor Jurisica
2006 J jnl
Introduction: Knowledge Discovery in High-Throughput Biological Domains.
Inf. Syst. Frontiers
Igor Jurisica, Janice I. Glasgow
2006 J jnl
Predicting Protein-Protein Interactions by Association Mining.
Inf. Syst. Frontiers
Max Kotlyar, Igor Jurisica
2005 C conf
An Ensemble of Case-Based Classifiers for High-Dimensional Biological Domains.
ICCBR
Niloofar Arshadi, Igor Jurisica
2005 J jnl
Data Mining for Case-Based Reasoning in High-Dimensional Biological Domains.
IEEE Trans. Knowl. Data Eng.
Niloofar Arshadi, Igor Jurisica
2005 Misc conf
Feature Selection for Improving Case-Based Classifiers on High-Dimensional Data Sets.
FLAIRS
Niloofar Arshadi, Igor Jurisica
2005 J jnl
Online Predicted Human Interaction Database.
Bioinform.
Kevin R. Brown, Igor Jurisica
2005 — conf
Scheduling functional regression tests for IBM DB2 products.
CASCON
Edward Xia, Igor Jurisica, Julie Waterhouse, Valerie Sloan
2004 J jnl
AI and Bioinformatics.
AI Mag.
Janice I. Glasgow, Igor Jurisica, Burkhard Rost
2004 J jnl
Applications of Case-Based Reasoning in Molecular Biology.
AI Mag.
Igor Jurisica, Janice I. Glasgow
2004 J jnl
Functional topology in a network of protein interactions.
Bioinform.
Natasa Przulj, Dennis A. Wigle, Igor Jurisica
2004 — conf
Maintaining Case-Based Reasoning Systems: A Machine Learning Approach.
ECCBR
Niloofar Arshadi, Igor Jurisica
2004 J jnl
Modeling interactome: scale-free or geometric?.
Bioinform.
Natasa Przulj, Derek G. Corneil, Igor Jurisica
2004 J jnl
Ontologies for Knowledge Management: An Information Systems Perspective.
Knowl. Inf. Syst.
Igor Jurisica, John Mylopoulos, Eric S. K. Yu
2004 J jnl
Protein complex prediction via cost-based clustering.
Bioinform.
Andrew D. King, Natasa Przulj, Igor Jurisica
2002 A conf
Binary tree-structured vector quantization approach to clustering and visualizing microarray data.
ISMB
Mujahid Sultan, Dennis A. Wigle, Christian A. Cumbaa, Marlena Maziarz, Janice I. Glasgow, Ming-Sound Tsao, Igor Jurisica
2001 C conf
Image-Feature Extraction for Protein Crystallization: Integrating Image Analysis and Case-Based Reasoning.
IAAI
Igor Jurisica, Phil Rogers, Janice I. Glasgow, Suzanne Fortier, Joseph R. Luft, Melissa A. Bianca, Robert J. Collins, George T. DeTitta
2001 J jnl
Improving Objectivity and Scalability in Protein Crystallization: Integrating Image Analysis With Knowledge Discovery.
IEEE Intell. Syst.
Igor Jurisica, Patrick Rogers, Janice I. Glasgow, Robert J. Collins, Jennifer R. Wolfley, Joseph R. Luft, George T. DeTitta
2001 J jnl
Intelligent decision support for protein crystal growth.
IBM Syst. J.
Igor Jurisica, Patrick Rogers, Janice I. Glasgow, Suzanne Fortier, Joseph R. Luft, Jennifer R. Wolfley, Melissa A. Bianca, Daniel R. Weeks, George T. DeTitta
2000 — conf
Extending Case-Based Reasoning by Discovering and Using Image Features in IVF.
SAC (1)
Igor Jurisica, Janice I. Glasgow
2000 J jnl
Incremental Iterative Retrieval and Browsing for Efficient Conversational CBR Systems.
Appl. Intell.
Igor Jurisica, Janice I. Glasgow, John Mylopoulos
2000 — conf
Knowledge discovery in biological domains (tutorial AM-3).
KDD Tutorial Notes
Aris Floratos, Igor Jurisica, Isidore Rigoutsos
1998 — conf
An Efficient Approach to Iterative Browsing and Retrieval for Case-Based Reasoning.
IEA/AIE (Vol. 2)
Igor Jurisica, Janice I. Glasgow
1998 A conf
Building Quality into Case-Based Reasoning Systems.
CAiSE
Igor Jurisica, Brian A. Nixon
1998 J jnl
Case-based reasoning in IVF: prediction and knowledge mining.
Artif. Intell. Medicine
Igor Jurisica, John Mylopoulos, Janice I. Glasgow, Heather Shapiro, Robert F. Casper
1998 — conf
Reverse Engineering by Mining Dynamic Repositories.
WCRE
Homayoun Dayani-Fard, Igor Jurisica
1998 — —
TA3: theory, implementation, and applications of similarity-based retrieval for case-based reasoning.
Igor Jurisica
1997 J jnl
Improving Performance of Case-Based Classification Using Context-Based Relevance.
Int. J. Artif. Intell. Tools
Igor Jurisica, Janice I. Glasgow
1997 — conf
Similarity-based retrieval for diverse bookshelf software repository users.
CASCON
Igor Jurisica
1996 B conf
Case-Based Classification Using Similarity-Based Retrieval.
ICTAI
Igor Jurisica, Janice I. Glasgow
1992 A* conf
A Statistical Approach to Solving the EBL Utility Problem.
AAAI
Russell Greiner, Igor Jurisica