Ignacio Medina

40 papers C 1Journal 34Unranked 5
YearRankTypeTitle / Venue / Authors
2019 J jnl
PyCellBase, an efficient python package for easy retrieval of biological data from heterogeneous sources.
BMC Bioinform.
Daniel Perez-Gil, Francisco J. Lopez, Joaquín Dopazo, Pablo Marín-García, Augusto Rendon, Ignacio Medina
2018 J jnl
A framework for genomic sequencing on clusters of multicore and manycore processors.
Int. J. High Perform. Comput. Appl.
Héctor Martínez, Sergio Barrachina, Maribel Castillo, Joaquín Tárraga, Ignacio Medina, Joaquín Dopazo, Enrique S. Quintana-Ortí
2017 J jnl
HGVA: the Human Genome Variation Archive.
Nucleic Acids Res.
Javier López, Jacobo Coll, Matthias Haimel, Swaathi Kandasamy, Joaquín Tárraga, Pedro Furió-Tarí, Wasim Bari, Marta Bleda, Antonio Rueda, Stefan Gräf, Augusto Rendon, Joaquín Dopazo, Ignacio Medina
2017 J jnl
VISMapper: ultra-fast exhaustive cartography of viral insertion sites for gene therapy.
BMC Bioinform.
José M. Juanes, Asunción Gallego, Joaquín Tárraga, Felipe Javier Chaves, Pablo Marín-García, Ignacio Medina, Vicente Arnau, Joaquín Dopazo
2016 J jnl
Actionable pathways: interactive discovery of therapeutic targets using signaling pathway models.
Nucleic Acids Res.
Francisco Salavert, Marta R. Hidalgo, Alicia Amadoz, Cankut Çubuk, Ignacio Medina, Daniel Crespo, José Carbonell-Caballero, Joaquín Dopazo
2016 J jnl
HPG pore: an efficient and scalable framework for nanopore sequencing data.
BMC Bioinform.
Joaquín Tárraga, Asunción Gallego, Vicente Arnau, Ignacio Medina, Joaquín Dopazo
2016 J jnl
MuffinEc: Error correction for de Novo assembly via greedy partitioning and sequence alignment.
Inf. Sci.
Andy S. Alic, Andrés Tomás, Ignacio Medina, Ignacio Blanquer
2016 J jnl
Web-based network analysis and visualization using CellMaps.
Bioinform.
Francisco Salavert, Luz Garcia-Alonso, Rubén Sánchez, Roberto Alonso, Marta Bleda, Ignacio Medina, Joaquín Dopazo
2015 J jnl
A parallel and sensitive software tool for methylation analysis on multicore platforms.
Bioinform.
Joaquín Tárraga, Mariano Pérez, Juan M. Orduña, José Duato, Ignacio Medina, Joaquín Dopazo
2015 J jnl
Assessing the impact of mutations found in next generation sequencing data over human signaling pathways.
Nucleic Acids Res.
Rosa D. Hernansaiz-Ballesteros, Francisco Salavert, Patricia Sebastián-León, Alejandro Alemán, Ignacio Medina, Joaquín Dopazo
2015 J jnl
Babelomics 5.0: functional interpretation for new generations of genomic data.
Nucleic Acids Res.
Roberto Alonso, Francisco Salavert, Francisco García-García, José Carbonell-Caballero, Marta Bleda, Luz Garcia-Alonso, Alba Sanchis-Juan, Daniel Perez-Gil, Pablo Marín-García, Rubén Sánchez, Cankut Çubuk, Marta R. Hidalgo, Alicia Amadoz, Rosa D. Hernansaiz-Ballesteros, Alejandro Alemán, Joaquín Tárraga, David Montaner, Ignacio Medina, Joaquín Dopazo
2015 J jnl
Concurrent and Accurate Short Read Mapping on Multicore Processors.
IEEE ACM Trans. Comput. Biol. Bioinform.
Héctor Martínez, Joaquín Tárraga, Ignacio Medina, Sergio Barrachina, Maribel Castillo, Joaquín Dopazo, Enrique S. Quintana-Ortí
2015 — conf
Scalable RNA Sequencing on Clusters of Multicore Processors.
TrustCom/BigDataSE/ISPA (3)
Héctor Martínez, Sergio Barrachina, Maribel Castillo, Joaquín Tárraga, Ignacio Medina, Joaquín Dopazo, Enrique S. Quintana-Ortí
2014 J jnl
A web tool for the design and management of panels of genes for targeted enrichment and massive sequencing for clinical applications.
Nucleic Acids Res.
Alejandro Alemán, Francisco García-García, Ignacio Medina, Joaquín Dopazo
2014 J jnl
A web-based interactive framework to assist in the prioritization of disease candidate genes in whole-exome sequencing studies.
Nucleic Acids Res.
Alejandro Alemán, Francisco García-García, Francisco Salavert, Ignacio Medina, Joaquín Dopazo
2014 J jnl
Acceleration of short and long DNA read mapping without loss of accuracy using suffix array.
Bioinform.
Joaquín Tárraga, Vicente Arnau, Héctor Martínez, Raul Moreno, Diego Cazorla, José Salavert Torres, Ignacio Blanquer Espert, Joaquín Dopazo, Ignacio Medina
2014 — conf
Design of a Generic Architecture for executing Bioinformatics Workflows on Distributed Infrastructures.
IWBBIO
Abel Carrión, Ignacio Blanquer, Miguel Caballer, Cristina Y. González, Ignacio Medina
2014 — conf
Inexact Sequence Mapping Study Cases: Hybrid GPU Computing and Memory Demanding Indexes.
IWBBIO
José Salavert Torres, Andrés Tomás, Ignacio Medina, Ignacio Blanquer
2014 — conf
Robust Error Correction for De Novo Assembly via Spectral Partitioning and Sequence Alignment.
IWBBIO
Andrei Alic, Andrés Tomás, José Salavert Torres, Ignacio Medina, Ignacio Blanquer
2013 C conf
A dynamic pipeline for RNA sequencing on multicore processors.
EuroMPI
Héctor Martínez, Joaquín Tárraga, Ignacio Medina, Sergio Barrachina, Maribel Castillo, Joaquín Dopazo, Enrique S. Quintana-Ortí
2013 J jnl
Concurrent and Accurate RNA Sequencing on Multicore Platforms
CoRR
Héctor Martínez, Joaquín Tárraga, Ignacio Medina, Sergio Barrachina, Maribel Castillo, Joaquín Dopazo, Enrique S. Quintana-Ortí
2013 J jnl
Genome Maps, a new generation genome browser.
Nucleic Acids Res.
Ignacio Medina, Francisco Salavert, Rubén Sánchez, Alejandro de María, Roberto Alonso, Pablo Escobar, Marta Bleda, Joaquín Dopazo
2013 J jnl
Inferring the functional effect of gene expression changes in signaling pathways.
Nucleic Acids Res.
Patricia Sebastián-León, José Carbonell, Francisco Salavert, Rubén Sánchez, Ignacio Medina, Joaquín Dopazo
2012 J jnl
CellBase, a comprehensive collection of RESTful web services for retrieving relevant biological information from heterogeneous sources.
Nucleic Acids Res.
Marta Bleda, Joaquín Tárraga, Alejandro de María, Francisco Salavert, Luz Garcia-Alonso, Matilde Celma, Ainoha Martín, Joaquín Dopazo, Ignacio Medina
2012 J jnl
Inferring the regulatory network behind a gene expression experiment.
Nucleic Acids Res.
Marta Bleda, Ignacio Medina, Roberto Alonso, Alejandro de María, Francisco Salavert, Joaquín Dopazo
2012 — conf
Multicore and Cloud-Based Solutions for Genomic Variant Analysis.
Euro-Par Workshops
Cristina Y. González, Marta Bleda, Francisco Salavert, Rubén Sánchez, Joaquín Dopazo, Ignacio Medina
2012 J jnl
Select Your SNPs (SYSNPs): a web tool for automatic and massive selection of SNPs.
Int. J. Data Min. Bioinform.
Belén Lorente-Galdos, Ignacio Medina, Carlos Morcillo-Suarez, Txema Heredia, Angel Carreño-Torres, Ricardo Sangros, Josep Alegre, Guillermo Pita, Gemma Vellalta, Núria Malats, David G. Pisano, Joaquín Dopazo, Arcadi Navarro
2012 J jnl
Using GPUs for the Exact Alignment of Short-Read Genetic Sequences by Means of the Burrows-Wheeler Transform.
IEEE ACM Trans. Comput. Biol. Bioinform.
José Salavert Torres, Ignacio Blanquer Espert, Andrés Tomás Dominguez, Vicente Hernández, Ignacio Medina, Joaquín Tárraga, Joaquín Dopazo
2012 J jnl
VARIANT: Command Line, Web service and Web interface for fast and accurate functional characterization of variants found by Next-Generation Sequencing.
Nucleic Acids Res.
Ignacio Medina, Alejandro de María, Marta Bleda, Francisco Salavert, Roberto Alonso, Cristina Y. González, Joaquín Dopazo
2011 J jnl
Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing.
Nucleic Acids Res.
Rubén Sánchez, François Serra, Joaquín Tárraga, Ignacio Medina, José Carbonell, Luis Pulido, Alejandro de María, Salvador Capella-Gutiérrez, Jaime Huerta-Cepas, Toni Gabaldón, Joaquín Dopazo, Hernán Dopazo
2010 J jnl
Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling.
Nucleic Acids Res.
Ignacio Medina, José Carbonell, Luis Pulido, Sara C. Madeira, Stefan Götz, Ana Conesa, Joaquín Tárraga, Alberto D. Pascual-Montano, Rubén Nogales-Cadenas, Javier Santoyo, Francisco García-García, Martina Marbà, David Montaner, Joaquín Dopazo
2010 J jnl
Serial Expression Analysis: a web tool for the analysis of serial gene expression data.
Nucleic Acids Res.
María José Nueda, José Carbonell, Ignacio Medina, Joaquín Dopazo, Ana Conesa
2009 J jnl
Gene set-based analysis of polymorphisms: finding pathways or biological processes associated to traits in genome-wide association studies.
Nucleic Acids Res.
Ignacio Medina, David Montaner, Nuria Bonifaci, Miguel Angel Pujana, José Carbonell, Joaquín Tárraga, Fátima Al-Shahrour, Joaquín Dopazo
2008 J jnl
Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments.
Nucleic Acids Res.
Fátima Al-Shahrour, José Carbonell, Pablo Minguez, Stefan Götz, Ana Conesa, Joaquín Tárraga, Ignacio Medina, Eva Alloza, David Montaner, Joaquín Dopazo
2008 J jnl
GEPAS, a web-based tool for microarray data analysis and interpretation.
Nucleic Acids Res.
Joaquín Tárraga, Ignacio Medina, José Carbonell, Jaime Huerta-Cepas, Pablo Minguez, Eva Alloza, Fátima Al-Shahrour, Susana Vegas-Azcárate, Stefan Götz, Pablo Escobar, Francisco García-García, Ana Conesa, David Montaner, Joaquín Dopazo
2008 J jnl
Joint annotation of coding and non-coding single nucleotide polymorphisms and mutations in the SNPeffect and PupaSuite databases.
Nucleic Acids Res.
Joke Reumers, Lucía Conde, Ignacio Medina, Sebastian Maurer-Stroh, Joost J. J. van Durme, Joaquín Dopazo, Frederic Rousseau, Joost Schymkowitz
2007 J jnl
FatiGO +: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments.
Nucleic Acids Res.
Fátima Al-Shahrour, Pablo Minguez, Joaquín Tárraga, Ignacio Medina, Eva Alloza, David Montaner, Joaquín Dopazo
2007 J jnl
ISACGH: a web-based environment for the analysis of Array CGH and gene expression which includes functional profiling.
Nucleic Acids Res.
Lucía Conde, David Montaner, Jordi Burguet-Castell, Joaquín Tárraga, Ignacio Medina, Fátima Al-Shahrour, Joaquín Dopazo
2007 J jnl
Phylemon: a suite of web tools for molecular evolution, phylogenetics and phylogenomics.
Nucleic Acids Res.
Joaquín Tárraga, Ignacio Medina, Leonardo Arbiza, Jaime Huerta-Cepas, Toni Gabaldón, Joaquín Dopazo, Hernán Dopazo
2007 J jnl
Prophet, a web-based tool for class prediction using microarray data.
Bioinform.
Ignacio Medina, David Montaner, Joaquín Tárraga, Joaquín Dopazo