Ie-Ming Shih

22 papers C 2Misc 1Journal 14Unranked 5
YearRankTypeTitle / Venue / Authors
2016 J jnl
Biologically inspired survival analysis based on integrating gene expression as mediator with genomic variants.
Comput. Biol. Medicine
Ibrahim Youssef, Robert Clarke, Ie-Ming Shih, Yue Joseph Wang, Guoqiang Yu
2015 J jnl
KDDN: an open-source Cytoscape app for constructing differential dependency networks with significant rewiring.
Bioinform.
Ye Tian, Bai Zhang, Eric P. Hoffman, Robert Clarke, Zhen Zhang, Ie-Ming Shih, Jianhua Xuan, David M. Herrington, Yue Joseph Wang
2015 J jnl
UNDO: a Bioconductor R package for unsupervised deconvolution of mixed gene expressions in tumor samples.
Bioinform.
Niya Wang, Ting Gong, Robert Clarke, Lulu Chen, Ie-Ming Shih, Zhen Zhang, Douglas A. Levine, Jianhua Xuan, Yue Joseph Wang
2014 J jnl
AISAIC: a software suite for accurate identification of significant aberrations in cancers.
Bioinform.
Bai Zhang, Xuchu Hou, Xiguo Yuan, Ie-Ming Shih, Zhen Zhang, Robert Clarke, Roger R. Wang, Yi Fu, Subha Madhavan, Yue Joseph Wang, Guoqiang Yu
2014 J jnl
Integration of Network Biology and Imaging to Study Cancer Phenotypes and Responses.
IEEE ACM Trans. Comput. Biol. Bioinform.
Ye Tian, Sean S. Wang, Zhen Zhang, Olga C. Rodriguez, Emanuel Petricoin III, Ie-Ming Shih, Daniel Chan, Maria Avantaggiati, Guoqiang Yu, Shaozhen Ye, Robert Clarke, Chao Wang, Bai Zhang, Yue Joseph Wang, Chris Albanese
2014 J jnl
Knowledge-fused differential dependency network models for detecting significant rewiring in biological networks.
BMC Syst. Biol.
Ye Tian, Bai Zhang, Eric P. Hoffman, Robert Clarke, Zhen Zhang, Ie-Ming Shih, Jianhua Xuan, David M. Herrington, Yue Joseph Wang
2012 — conf
Accurate identification of significant aberrations in contaminated cancer genome.
GENSiPS
Xuchu Hou, Guoqiang Yu, Xiguo Yuan, Bai Zhang, Ie-Ming Shih, Zhen Zhang, Robert Clarke, Subha Madhavan
2012 C conf
Detecting aberrant signal transduction pathways from high-throughput data using GIST algorithm.
CIBCB
Jinghua Gu, Jianhua Xuan, Chen Wang, Li Chen, Tian-Li Wang, Ie-Ming Shih
2012 Misc conf
Integrative Network Analysis to Identify Aberrant Pathway Networks in Ovarian Cancer.
Pacific Symposium on Biocomputing
Li Chen, Jianhua Xuan, Jinghua Gu, Yue Wang, Zhen Zhang, Tian-Li Wang, Ie-Ming Shih
2012 J jnl
Regulatory component analysis: A semi-blind extraction approach to infer gene regulatory networks with imperfect biological knowledge.
Signal Process.
Chen Wang, Jianhua Xuan, Ie-Ming Shih, Robert Clarke, Yue Joseph Wang
2011 J jnl
BACOM:
Bioinform.
Guoqiang Yu, Bai Zhang, G. Steven Bova, Jianfeng Xu, Ie-Ming Shih, Yue Joseph Wang
2011 J jnl
DDN: a caBIG
Bioinform.
Bai Zhang, Ye Tian, Lu Jin, Huai Li, Ie-Ming Shih, Subha Madhavan, Robert Clarke, Eric P. Hoffman, Jianhua Xuan, Leena Hilakivi-Clarke, Yue Joseph Wang
2011 — conf
GIST: A Gibbs sampler to identify intracellular signal transduction pathways.
EMBC
Jinghua Gu, Chen Wang, Ie-Ming Shih, Tian-Li Wang, Yue Wang, Robert Clarke, Jianhua Xuan
2011 — conf
Knowledge-guided differential dependency network learning for detecting structural changes in biological networks.
BCB
Ye Tian, Bai Zhang, Ie-Ming Shih, Yue Joseph Wang
2011 J jnl
PUGSVM: a caBIG
Bioinform.
Guoqiang Yu, Huai Li, Sook Shin Ha, Ie-Ming Shih, Robert Clarke, Eric P. Hoffman, Subha Madhavan, Jianhua Xuan, Yue Joseph Wang
2010 J jnl
Analysing DNA copy number changes using Fused Margin Regression.
Int. J. Funct. Informatics Pers. Medicine
Yuanjian Feng, Guoqiang Yu, Tian-Li Wang, Ie-Ming Shih, Yue Joseph Wang
2010 J jnl
Matched Gene Selection and Committee Classifier for Molecular Classification of Heterogeneous Diseases.
J. Mach. Learn. Res.
Guoqiang Yu, Yuanjian Feng, David J. Miller, Jianhua Xuan, Eric P. Hoffman, Robert Clarke, Ben Davidson, Ie-Ming Shih, Yue Joseph Wang
2009 — conf
Accurate Estimation of Genomic Deletions and Normal Cell Contamination by Bayesian Analysis of Mixtures.
BIBM
Guoqiang Yu, Bai Zhang, Jianfeng Xu, Ie-Ming Shih, Yue Joseph Wang
2009 — conf
Analyzing DNA Copy Number Changes Using Fused Margin Regression.
BIBM
Yuanjian Feng, Guoqiang Yu, Tian-Li Wang, Ie-Ming Shih, Yue Joseph Wang
2009 J jnl
Biomarker identification by knowledge-driven multilevel ICA and motif analysis.
Int. J. Data Min. Bioinform.
Li Chen, Jianhua Xuan, Chen Wang, Yue Joseph Wang, Ie-Ming Shih, Tian-Li Wang, Zhen Zhang, Robert Clarke, Eric P. Hoffman
2008 J jnl
Knowledge-guided multi-scale independent component analysis for biomarker identification.
BMC Bioinform.
Li Chen, Jianhua Xuan, Chen Wang, Ie-Ming Shih, Yue Joseph Wang, Zhen Zhang, Eric P. Hoffman, Robert Clarke
2007 C conf
Biomarker Identification by Knowledge-Driven Multi-Level ICA and Motif Analysis.
ICMLA
Li Chen, Chen Wang, Ie-Ming Shih, Tian-Li Wang, Zhen Zhang, Yue Joseph Wang, Robert Clarke, Eric P. Hoffman, Jianhua Xuan