Ibrahim Numanagic

19 papers A* 1A 1B 2C 1Journal 12Unranked 1
YearRankTypeTitle / Venue / Authors
2026 J jnl
Secure distributed multiple imputation enables missing data inference for private data proprietors.
npj Digit. Medicine
Haris Smajlovic, Yi Lian, Qi Long, Ibrahim Numanagic, Xiaoqian Jiang
2025 A* conf
Shechi: A Secure Distributed Computation Compiler Based on Multiparty Homomorphic Encryption.
USENIX Security Symposium
Haris Smajlovic, David Froelicher, Ariya Shajii, Bonnie Berger, Hyunghoon Cho, Ibrahim Numanagic
2025 A conf
Vectron: A Dynamic Programming Auto-vectorization Framework.
CGO
Sourena Naser Moghaddasi, Haris Smajlovic, Ariya Shajii, Ibrahim Numanagic
2024 J jnl
Biologically-informed killer cell immunoglobulin-like receptor gene annotation tool.
Bioinform.
Michael K. B. Ford, Ananth Hari, Qinghui Zhou, Ibrahim Numanagic, S. Cenk Sahinalp
2024 J jnl
Diagnostics of viral infections using high-throughput genome sequencing data.
Briefings Bioinform.
Haochen Ning, Ian Boyes, Ibrahim Numanagic, Michael Rott, Li Xing, Xuekui Zhang
2023 B conf
Codon: A Compiler for High-Performance Pythonic Applications and DSLs.
CC
Ariya Shajii, Gabriel Ramirez, Haris Smajlovic, Jessica Ray, Bonnie Berger, Saman P. Amarasinghe, Ibrahim Numanagic
2022 J jnl
Fast characterization of segmental duplication structure in multiple genome assemblies.
Algorithms Mol. Biol.
Hamza Iseric, Can Alkan, Faraz Hach, Ibrahim Numanagic
2022 — conf
Sequre: a high-performance framework for rapid development of secure bioinformatics pipelines.
IPDPS Workshops
Haris Smajlovic, Ariya Shajii, Bonnie Berger, Hyunghoon Cho, Ibrahim Numanagic
2021 C conf
BISER: Fast Characterization of Segmental Duplication Structure in Multiple Genome Assemblies.
WABI
Hamza Iseric, Can Alkan, Faraz Hach, Ibrahim Numanagic
2019 — ch.
Genomic Data Compression.
Encyclopedia of Big Data Technologies
Kaiyuan Zhu, Ibrahim Numanagic, Süleyman Cenk Sahinalp
2019 J jnl
Seq: a high-performance language for bioinformatics.
Proc. ACM Program. Lang.
Ariya Shajii, Ibrahim Numanagic, Riyadh Baghdadi, Bonnie Berger, Saman P. Amarasinghe
2018 J jnl
Computational identification of micro-structural variations and their proteogenomic consequences in cancer.
Bioinform.
Yen-Yi Lin, Alexander Gawronski, Faraz Hach, Sujun Li, Ibrahim Numanagic, Iman Sarrafi, Swati Mishra, Andrew W. McPherson, Colin C. Collins, Milan Radovich, Haixu Tang, Süleyman Cenk Sahinalp
2018 J jnl
Fast Characterization of Segmental Duplications in Genome Assemblies.
CoRR
Ibrahim Numanagic, Alim S. Gökkaya, Lillian Zhang, Bonnie Berger, Can Alkan, Faraz Hach
2018 J jnl
Fast characterization of segmental duplications in genome assemblies.
Bioinform.
Ibrahim Numanagic, Alim S. Gökkaya, Lillian Zhang, Bonnie Berger, Can Alkan, Faraz Hach
2018 B conf
Latent Variable Model for Aligning Barcoded Short-Reads Improves Downstream Analyses.
RECOMB
Ariya Shajii, Ibrahim Numanagic, Bonnie Berger
2017 J jnl
Discovery and genotyping of novel sequence insertions in many sequenced individuals.
Bioinform.
Pinar Kavak, Yen-Yi Lin, Ibrahim Numanagic, Hossein Asghari, Tunga Güngör, Can Alkan, Faraz Hach
2015 J jnl
Cypiripi: exact genotyping of
Bioinform.
Ibrahim Numanagic, Salem Malikic, Victoria M. Pratt, Todd C. Skaar, David A. Flockhart, Süleyman Cenk Sahinalp
2014 J jnl
ORMAN: Optimal resolution of ambiguous RNA-Seq multimappings in the presence of novel isoforms.
Bioinform.
Phuong Dao, Ibrahim Numanagic, Yen-Yi Lin, Faraz Hach, Emre Karakoç, Nilgun Donmez, Colin C. Collins, Evan E. Eichler, Süleyman Cenk Sahinalp
2012 J jnl
SCALCE: boosting sequence compression algorithms using locally consistent encoding.
Bioinform.
Faraz Hach, Ibrahim Numanagic, Can Alkan, Süleyman Cenk Sahinalp