Ibrahim Burak Özyurt

20 papers C 1Misc 2Journal 13Unranked 4
YearRankTypeTitle / Venue / Authors
2025 J jnl
Automatic detection and extraction of key resources from tables in biomedical papers.
BioData Min.
Ibrahim Burak Özyurt, Anita E. Bandrowski
2025 J jnl
Developing a multiscale neural connectivity knowledgebase of the autonomic nervous system.
Frontiers Neuroinformatics
Fahim T. Imam, Thomas H. Gillespie, Ilias Ziogas, Monique Surles-Zeigler, Susan J. Tappan, Ibrahim Burak Özyurt, Jyl Boline, Bernard de Bono, Jeffrey S. Grethe, Maryann E. Martone
2021 J jnl
Antibody Watch: Text mining antibody specificity from the literature.
PLoS Comput. Biol.
Chun-Nan Hsu, Chia-Hui Chang, Thamolwan Poopradubsil, Amanda Lo, Karen A. William, Ko-Wei Lin, Anita E. Bandrowski, Ibrahim Burak Özyurt, Jeffrey S. Grethe, Maryann E. Martone
2021 — conf
End-to-end Biomedical Question Answering via Bio-AnswerFinder and Discriminative Language Representation Models.
CLEF (Working Notes)
Ibrahim Burak Özyurt
2020 J jnl
Antibody Watch: Text Mining Antibody Specificity from the Literature.
CoRR
Chun-Nan Hsu, Chia-Hui Chang, Thamolwan Poopradubsil, Amanda Lo, Karen A. William, Ko-Wei Lin, Anita E. Bandrowski, Ibrahim Burak Özyurt, Jeffrey S. Grethe, Maryann E. Martone
2020 J jnl
Bio-AnswerFinder: a system to find answers to questions from biomedical texts.
Database J. Biol. Databases Curation
Ibrahim Burak Özyurt, Anita E. Bandrowski, Jeffrey S. Grethe
2020 J jnl
Comparing the Use of Research Resource Identifiers and Natural Language Processing for Citation of Databases, Software, and Other Digital Artifacts.
Comput. Sci. Eng.
Chun-Nan Hsu, Anita E. Bandrowski, Tom Gillespie, Jon Udell, Ko-Wei Lin, Ibrahim Burak Özyurt, Jeffrey S. Grethe, Maryann E. Martone
2020 — conf
On the effectiveness of small, discriminatively pre-trained language representation models for biomedical text mining.
SDP@EMNLP
Ibrahim Burak Özyurt
2019 — conf
Iterative Document Retrieval via Deep Learning Approaches for Biomedical Question Answering.
eScience
Ibrahim Burak Özyurt, Jeffrey S. Grethe
2018 J jnl
DataMed - an open source discovery index for finding biomedical datasets.
J. Am. Medical Informatics Assoc.
Xiaoling Chen, Anupama E. Gururaj, Ibrahim Burak Özyurt, Ruiling Liu, Ergin Soysal, Trevor Cohen, Firat Tiryaki, Yueling Li, Nansu Zong, Min Jiang, Deevakar Rogith, Mandana Salimi, Hyeon-Eui Kim, Philippe Rocca-Serra, Alejandra N. González-Beltrán, Claudiu Farcas, Todd Johnson, Ronald Margolis, George Alter, Susanna-Assunta Sansone, Ian Fore, Lucila Ohno-Machado, Jeffrey S. Grethe, Hua Xu
2018 J jnl
Foundry: a message-oriented, horizontally scalable ETL system for scientific data integration and enhancement.
Database J. Biol. Databases Curation
Ibrahim Burak Özyurt, Jeffrey S. Grethe
2016 Misc conf
A Scalable Dataset Indexing Infrastructure for the bioCADDIE Data Discovery System.
AMIA
Jeffrey S. Grethe, Ibrahim Burak Özyurt, Hua Xu, Xiaoling Chen, Ruiling Liu, Ergin Soysal, Anupama E. Gururaj, Hyeon-Eui Kim, Trevor Cohen, Todd R. Johnson, Mandana Salimi, Saeid Pournejati, Min Jiang, Claudiu Farcas, Alejandra N. González-Beltrán, Philippe Rocca-Serra, Muhamamd F. Amith, Cui Tao, Ian Fore, Ronald Margolis, George Alter, Susanna-Assunta Sansone, Lucila Ohno-Machado
2016 Misc conf
Development of DataMed, a Data Discovery Index Prototype by bioCADDIE: Laying the Groundwork for Biomedical Data Discovery.
AMIA
Hua Xu, Jeffrey S. Grethe, Xiaoling Chen, Ruiling Liu, Ergin Soysal, Anupama E. Gururaj, Yueling Li, Ibrahim Burak Özyurt, Hyeon-Eui Kim, Trevor Cohen, Todd R. Johnson, Mandana Salimi, Saeid Pournejati, Min Jiang, Claudiu Farcas, Alejandra N. González-Beltrán, Philippe Rocca-Serra, Muhamamd F. Amith, Cui Tao, Ian Fore, Ronald Margolis, George Alter, Susanna-Assunta Sansone, Lucila Ohno-Machado
2016 J jnl
The Cerebral Blood Flow Biomedical Informatics Research Network (CBFBIRN) data repository.
NeuroImage
David Shin, Ibrahim Burak Özyurt, Greg G. Brown, Christine Fennema-Notestine, Thomas T. Liu
2012 J jnl
Automatic Identification and Classification of Noun Argument Structures in Biomedical Literature.
IEEE ACM Trans. Comput. Biol. Bioinform.
Ibrahim Burak Özyurt
2012 C conf
Processing Semantic Keyword Queries for Scientific Literature.
NLDB
Ibrahim Burak Özyurt, Christopher Condit, Amarnath Gupta
2009 J jnl
Derived data storage and exchange workflow for large-scale neuroimaging analyses on the BIRN grid.
Frontiers Neuroinformatics
David B. Keator, Dingying Wei, Syam Gadde, Henry Jeremy Bockholt, Jeffrey S. Grethe, Daniel S. Marcus, Nicole Aucoin, Ibrahim Burak Özyurt
1999 J jnl
Clustering with a genetically optimized approach.
IEEE Trans. Evol. Comput.
Lawrence O. Hall, Ibrahim Burak Özyurt, James C. Bezdek
1999 J jnl
SQFDiag: semi-quantitative model-based fault monitoring and diagnosis via episodic fuzzy rules.
IEEE Trans. Syst. Man Cybern. Part A
Ibrahim Burak Özyurt, Lawrence O. Hall, Aydin K. Sunol
1998 — conf
Chemical Process Fault Diagnosis Using Kernel Retrofitted Fuzzy Genetic Algorithm Based Learner (FGAL) with a Hidden Markov Model.
IEA/AIE (Vol. 1)
Ibrahim Burak Özyurt, Aydin K. Sunol, Lawrence O. Hall