Ian Walsh

26 papers Journal 24Unranked 2
YearRankTypeTitle / Venue / Authors
2023 J jnl
FUTURE-AI: International consensus guideline for trustworthy and deployable artificial intelligence in healthcare.
CoRR
Karim Lekadir, Aasa Feragen, Abdul Joseph Fofanah, Alejandro F. Frangi, Alena Buyx, Anais Emelie, Andrea Lara, Antonio R. Porras, An-Wen Chan, Arcadi Navarro, Ben Glocker, Benard Ohene Botwe, Bishesh Khanal, Brigit Beger, Carol C. Wu, Celia Cintas, Curtis P. Langlotz, Daniel Rueckert, Deogratias Mzurikwao, Dimitrios I. Fotiadis, Doszhan Zhussupov, Enzo Ferrante, Erik Meijering, Eva Weicken, Fabio A. González, Folkert W. Asselbergs, Fred W. Prior, Gabriel P. Krestin, Gary S. Collins, Geletaw Sahle Tegenaw, Georgios Kaissis, Gianluca Misuraca, Gianna Tsakou, Girish Dwivedi, Haridimos Kondylakis, Harsha Jayakody, Henry C. Woodruff, Hugo J. W. L. Aerts, Ian Walsh, Ioanna Chouvarda, Irène Buvat, Islem Rekik, James S. Duncan, Jayashree Kalpathy-Cramer, Jihad Zahir, Jinah Park, John Mongan, Judy W. Gichoya, Julia A. Schnabel, et al.
2020 J jnl
Recommendations for machine learning validation in biology.
CoRR
Ian Walsh, Dmytro Fishman, Dario Garcia-Gasulla, Tiina Titma, Jen Harrow, Fotis E. Psomopoulos, Silvio C. E. Tosatto
2019 J jnl
GlycanAnalyzer: software for automated interpretation of N-glycan profiles after exoglycosidase digestions.
Bioinform.
Ian Walsh, Terry Nguyen-Khuong, Katherine Wongtrakul-Kish, Shi Jie Tay, Daniel Chew, Tasha José, Christopher H. Taron, Pauline M. Rudd
2019 J jnl
GlycanAnalyzer: software for automated interpretation of N-glycan profiles after exoglycosidase digestions.
Bioinform.
Ian Walsh, Terry Nguyen-Khuong, Katherine Wongtrakul-Kish, Shi Jie Tay, Daniel Chew, Tasha José, Christopher H. Taron, Pauline M. Rudd
2018 J jnl
GlycoStore: a database of retention properties for glycan analysis.
Bioinform.
Sophie Zhao, Ian Walsh, Jodie L. Abrahams, Louise Royle, Terry Nguyen-Khuong, Daniel Spencer, Daryl L. Fernandes, Nicolle H. Packer, Pauline M. Rudd, Matthew P. Campbell
2017 J jnl
FELLS: fast estimator of latent local structure.
Bioinform.
Damiano Piovesan, Ian Walsh, Giovanni Minervini, Silvio C. E. Tosatto
2016 J jnl
Correct machine learning on protein sequences: a peer-reviewing perspective.
Briefings Bioinform.
Ian Walsh, Gianluca Pollastri, Silvio C. E. Tosatto
2015 J jnl
Comprehensive large-scale assessment of intrinsic protein disorder.
Bioinform.
Ian Walsh, Manuel Giollo, Tomás Di Domenico, Carlo Ferrari, Olav Zimmermann, Silvio C. E. Tosatto
2015 J jnl
MobiDB 2.0: an improved database of intrinsically disordered and mobile proteins.
Nucleic Acids Res.
Emilio Potenza, Tomás Di Domenico, Ian Walsh, Silvio C. E. Tosatto
2014 J jnl
PASTA 2.0: an improved server for protein aggregation prediction.
Nucleic Acids Res.
Ian Walsh, Flavio Seno, Silvio C. E. Tosatto, Antonio Trovato
2014 J jnl
RepeatsDB: a database of tandem repeat protein structures.
Nucleic Acids Res.
Tomás Di Domenico, Emilio Potenza, Ian Walsh, R. Gonzalo Parra, Manuel Giollo, Giovanni Minervini, Damiano Piovesan, Awais Ihsan, Carlo Ferrari, Andrey V. Kajava, Silvio C. E. Tosatto
2014 J jnl
Toward an accurate prediction of inter-residue distances in proteins using 2D recursive neural networks.
BMC Bioinform.
Predrag Kukic, Claudio Mirabello, Giuseppe Tradigo, Ian Walsh, Pierangelo Veltri, Gianluca Pollastri
2013 J jnl
Analysis and consensus of currently available intrinsic protein disorder annotation sources in the MobiDB database.
BMC Bioinform.
Tomás Di Domenico, Ian Walsh, Silvio C. E. Tosatto
2012 J jnl
Bluues server: electrostatic properties of wild-type and mutated protein structures.
Bioinform.
Ian Walsh, Giovanni Minervini, Alessandra Corazza, Gennaro Esposito, Silvio C. E. Tosatto, Federico Fogolari
2012 J jnl
ESpritz: accurate and fast prediction of protein disorder.
Bioinform.
Ian Walsh, Alberto J. M. Martin, Tomás Di Domenico, Silvio C. E. Tosatto
2012 J jnl
MobiDB: a comprehensive database of intrinsic protein disorder annotations.
Bioinform.
Tomás Di Domenico, Ian Walsh, Alberto J. M. Martin, Silvio C. E. Tosatto
2012 J jnl
RAPHAEL: recognition, periodicity and insertion assignment of solenoid protein structures.
Bioinform.
Ian Walsh, Francesco Sirocco, Giovanni Minervini, Tomás Di Domenico, Carlo Ferrari, Silvio C. E. Tosatto
2011 J jnl
CSpritz: accurate prediction of protein disorder segments with annotation for homology, secondary structure and linear motifs.
Nucleic Acids Res.
Ian Walsh, Alberto J. M. Martin, Tomás Di Domenico, Alessandro Vullo, Gianluca Pollastri, Silvio C. E. Tosatto
2011 J jnl
RING: networking interacting residues, evolutionary information and energetics in protein structures.
Bioinform.
Alberto J. M. Martin, Michele Vidotto, Filippo Boscariol, Tomás Di Domenico, Ian Walsh, Silvio C. E. Tosatto
2010 J jnl
MOBI: a web server to define and visualize structural mobility in NMR protein ensembles.
Bioinform.
Alberto J. M. Martin, Ian Walsh, Silvio C. E. Tosatto
2009 J jnl
Ab initio and homology based prediction of protein domains by recursive neural networks.
BMC Bioinform.
Ian Walsh, Alberto J. M. Martin, Catherine Mooney, Enrico Rubagotti, Alessandro Vullo, Gianluca Pollastri
2009 — conf
An adaptive model for learning molecular endpoints.
Similarity-based learning on structures
Ian Walsh, Alessandro Vullo, Gianluca Pollastri
2009 — conf
Recursive Neural Networks for Undirected Graphs for Learning Molecular Endpoints.
PRIB
Ian Walsh, Alessandro Vullo, Gianluca Pollastri
2008 J jnl
Long-Range Information and Physicality Constraints Improve predicted protein Contact Maps.
J. Bioinform. Comput. Biol.
Alberto J. M. Martin, Davide Baù, Alessandro Vullo, Ian Walsh, Gianluca Pollastri
2006 J jnl
A two-stage approach for improved prediction of residue contact maps.
BMC Bioinform.
Alessandro Vullo, Ian Walsh, Gianluca Pollastri
2006 J jnl
Distill: a suite of web servers for the prediction of one-, two- and three-dimensional structural features of proteins.
BMC Bioinform.
Davide Baù, Alberto J. M. Martin, Catherine Mooney, Alessandro Vullo, Ian Walsh, Gianluca Pollastri