Ian T. Paulsen

16 papers A 1Journal 15
YearRankTypeTitle / Venue / Authors
2017 J jnl
The EcoCyc database: reflecting new knowledge about Escherichia coli K-12.
Nucleic Acids Res.
Ingrid M. Keseler, Amanda Mackie, Alberto Santos-Zavaleta, Richard Billington, César Bonavides-Martínez, Ron Caspi, Carol A. Fulcher, Socorro Gama-Castro, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Luis Muñiz-Rascado, Quang Ong, Suzanne M. Paley, Martín Peralta-Gil, Pallavi Subhraveti, David A. Velázquez-Ramírez, Daniel S. Weaver, Julio Collado-Vides, Ian T. Paulsen, Peter D. Karp
2017 J jnl
TransportDB 2.0: a database for exploring membrane transporters in sequenced genomes from all domains of life.
Nucleic Acids Res.
Liam D. H. Elbourne, Sasha G. Tetu, Karl A. Hassan, Ian T. Paulsen
2014 J jnl
A genome-scale metabolic flux model of Escherichia coli K-12 derived from the EcoCyc database.
BMC Syst. Biol.
Daniel S. Weaver, Ingrid M. Keseler, Amanda Mackie, Ian T. Paulsen, Peter D. Karp
2013 J jnl
EcoCyc: fusing model organism databases with systems biology.
Nucleic Acids Res.
Ingrid M. Keseler, Amanda Mackie, Martín Peralta-Gil, Alberto Santos-Zavaleta, Socorro Gama-Castro, César Bonavides-Martínez, Carol A. Fulcher, Araceli M. Huerta, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Luis Muñiz-Rascado, Quang Ong, Suzanne M. Paley, Imke Schröder, Alexander Glennon Shearer, Pallavi Subhraveti, Michael Travers, Deepika Weerasinghe, Verena Weiss, Julio Collado-Vides, Robert P. Gunsalus, Ian T. Paulsen, Peter D. Karp
2011 J jnl
EcoCyc: a comprehensive database of
Nucleic Acids Res.
Ingrid M. Keseler, Julio Collado-Vides, Alberto Santos-Zavaleta, Martín Peralta-Gil, Socorro Gama-Castro, Luis Muñiz-Rascado, César Bonavides-Martínez, Suzanne M. Paley, Markus Krummenacker, Tomer Altman, Pallavi Kaipa, Aaron Spaulding, John Pacheco, Mario Latendresse, Carol A. Fulcher, Malabika Sarker, Alexander Glennon Shearer, Amanda Mackie, Ian T. Paulsen, Robert P. Gunsalus, Peter D. Karp
2010 J jnl
Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology.
Briefings Bioinform.
Peter D. Karp, Suzanne M. Paley, Markus Krummenacker, Mario Latendresse, Joseph M. Dale, Thomas J. Lee, Pallavi Kaipa, Fred Gilham, Aaron Spaulding, Liviu Popescu, Tomer Altman, Ian T. Paulsen, Ingrid M. Keseler, Ron Caspi
2009 J jnl
EcoCyc: A comprehensive view of
Nucleic Acids Res.
Ingrid M. Keseler, César Bonavides-Martínez, Julio Collado-Vides, Socorro Gama-Castro, Robert P. Gunsalus, D. Aaron Johnson, Markus Krummenacker, Laura M. Nolan, Suzanne M. Paley, Ian T. Paulsen, Martín Peralta-Gil, Alberto D. Santos-Zavaleta, Alexander Glennon Shearer, Peter D. Karp
2008 A conf
Annotation-based inference of transporter function.
ISMB
Thomas J. Lee, Ian T. Paulsen, Peter D. Karp
2007 J jnl
TransportDB: a comprehensive database resource for cytoplasmic membrane transport systems and outer membrane channels.
Nucleic Acids Res.
Qinghu Ren, Kaixi Chen, Ian T. Paulsen
2005 J jnl
Comparative Analyses of Fundamental Differences in Membrane Transport Capabilities in Prokaryotes and Eukaryotes.
PLoS Comput. Biol.
Qinghu Ren, Ian T. Paulsen
2005 J jnl
EcoCyc: a comprehensive database resource for
Nucleic Acids Res.
Ingrid M. Keseler, Julio Collado-Vides, Socorro Gama-Castro, John Ingraham, Suzanne M. Paley, Ian T. Paulsen, Martín Peralta-Gil, Peter D. Karp
2004 J jnl
TransportDB: a relational database of cellular membrane transport systems.
Nucleic Acids Res.
Qinghu Ren, Katherine H. Kang, Ian T. Paulsen
2003 J jnl
ToxoDB: accessing the Toxoplasma gondii genome.
Nucleic Acids Res.
Jessica C. Kissinger, Bindu Gajria, Li Li, Ian T. Paulsen, David S. Roos
2002 J jnl
The EcoCyc Database.
Nucleic Acids Res.
Peter D. Karp, Monica Riley, Milton H. Saier Jr., Ian T. Paulsen, Julio Collado-Vides, Suzanne M. Paley, Alida Pellegrini-Toole, César Bonavides-Martínez, Socorro Gama-Castro
2001 J jnl
TIGRFAMs: a protein family resource for the functional identification of proteins.
Nucleic Acids Res.
Daniel H. Haft, Brendan J. Loftus, Delwood L. Richardson, Fan Yang, Jonathan A. Eisen, Ian T. Paulsen, Owen White
2000 J jnl
The EcoCyc and MetaCyc databases.
Nucleic Acids Res.
Peter D. Karp, Monica Riley, Milton H. Saier Jr., Ian T. Paulsen, Suzanne M. Paley, Alida Pellegrini-Toole