Hélène Touzet

40 papers A* 1B 5C 6Journal 23Unranked 4

Year	Rank	Type	Title / Venue / Authors
2021	C	`ed.`	String Processing and Information Retrieval - 28th International Symposium, SPIRE 2021, Lille, France, October 4-6, 2021, Proceedings SPIRE Thierry Lecroq, Hélène Touzet
2020	J	`jnl`	Comparative assessment of long-read error correction software applied to Nanopore RNA-sequencing data. Briefings Bioinform. Leandro Lima, Camille Marchet, Ségolène Caboche, Corinne Da Silva, Benjamin Istace, Jean-Marc Aury, Hélène Touzet, Rayan Chikhi
2018	J	`jnl`	DiNAMO: highly sensitive DNA motif discovery in high-throughput sequencing data. BMC Bioinform. Chadi Saad, Laurent Noé, Hugues Richard, Julie Leclerc, Marie-Pierre Buisine, Hélène Touzet, Martin Figeac
2018	J	`jnl`	MATAM: reconstruction of phylogenetic marker genes from short sequencing reads in metagenomes. Bioinform. Pierre Pericard, Yoann Dufresne, Loïc Couderc, Samuel Blanquart, Hélène Touzet
2017	J	`jnl`	Efficient approximations of RNA kinetics landscape using non-redundant sampling. Bioinform. Juraj Michalik, Hélène Touzet, Yann Ponty
2016	J	`jnl`	Approximate search of short patterns with high error rates using the 01 J. Discrete Algorithms Christophe Vroland, Mikaël Salson, Sébastien Bini, Hélène Touzet
2016	C	`conf`	On the Levenshtein Automaton and the Size of the Neighbourhood of a Word. LATA Hélène Touzet
2015	C	`ed.`	Algorithms in Bioinformatics - 15th International Workshop, WABI 2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings WABI Mihai Pop, Hélène Touzet
2015	J	`jnl`	Modeling Alternate RNA Structures in Genomic Sequences. J. Comput. Biol. Azadeh Saffarian, Mathieu Giraud, Hélène Touzet
2014	C	`conf`	Lossless Seeds for Searching Short Patterns with High Error Rates. IWOCA Christophe Vroland, Mikaël Salson, Hélène Touzet
2014	J	`jnl`	Modeling Dynamic Programming Problems over Sequences and Trees with Inverse Coupled Rewrite Systems. Algorithms Robert Giegerich, Hélène Touzet
2014	—	`conf`	Searching for alternate RNA structures in genomic sequences. CMSR@ECCB Azadeh Saffarian, Mathieu Giraud, Hélène Touzet
2012	J	`jnl`	BRASERO: A Resource for Benchmarking RNA Secondary Structure Comparison Algorithms. Adv. Bioinformatics Julien Allali, Cédric Saule, Cédric Chauve, Yves D'Aubenton-Carafa, Alain Denise, Christine Drevet, Pascal Ferraro, Daniel Gautheret, Claire Herrbach, Fabrice Leclerc, Antoine de Monte, Aïda Ouangraoua, Marie-France Sagot, Michel Termier, Claude Thermes, Hélène Touzet
2012	J	`jnl`	RNA Locally Optimal Secondary Structures. J. Comput. Biol. Azadeh Saffarian, Mathieu Giraud, Antoine de Monte, Hélène Touzet
2012	J	`jnl`	SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data. Bioinform. Evguenia Kopylova, Laurent Noé, Hélène Touzet
2010	J	`jnl`	Alignments of RNA Structures. IEEE ACM Trans. Comput. Biol. Bioinform. Guillaume Blin, Alain Denise, Serge Dulucq, Claire Herrbach, Hélène Touzet
2010	J	`jnl`	TFM-Explorer: mining Nucleic Acids Res. Laurie Tonon, Hélène Touzet, Jean-Stéphane Varré
2009	J	`jnl`	Computational identification of protein-coding sequences by comparative analysis. Int. J. Data Min. Bioinform. Arnaud Fontaine, Hélène Touzet
2009	C	`conf`	Self-overlapping Occurrences and Knuth-Morris-Pratt Algorithm for Weighted Matching. LATA Aude Liefooghe, Hélène Touzet, Jean-Stéphane Varré
2008	J	`jnl`	MAGNOLIA: multiple alignment of protein-coding and structural RNA sequences. Nucleic Acids Res. Arnaud Fontaine, Antoine de Monte, Hélène Touzet
2007	J	`jnl`	Comparing similar ordered trees in linear-time. J. Discrete Algorithms Hélène Touzet
2007	—	`conf`	Computational Identification of Protein-Coding Sequences by Comparative Analysis. BIBM Arnaud Fontaine, Hélène Touzet
2007	J	`jnl`	Efficient and accurate P-value computation for Position Weight Matrices. Algorithms Mol. Biol. Hélène Touzet, Jean-Stéphane Varré
2006	C	`conf`	How to Compare Arc-Annotated Sequences: The Alignment Hierarchy. SPIRE Guillaume Blin, Hélène Touzet
2006	B	`conf`	Large Scale Matching for Position Weight Matrices. CPM Aude Liefooghe, Hélène Touzet, Jean-Stéphane Varré
2006	J	`jnl`	Predicting transcription factor binding sites using local over-representation and comparative genomics. BMC Bioinform. Matthieu Defrance, Hélène Touzet
2005	B	`conf`	A Linear Tree Edit Distance Algorithm for Similar Ordered Trees. CPM Hélène Touzet
2005	J	`jnl`	Decomposition algorithms for the tree edit distance problem. J. Discrete Algorithms Serge Dulucq, Hélène Touzet
2004	J	`jnl`	CARNAC: folding families of related RNAs. Nucleic Acids Res. Hélène Touzet, Olivier Perriquet
2003	B	`conf`	Analysis of Tree Edit Distance Algorithms. CPM Serge Dulucq, Hélène Touzet
2003	J	`jnl`	Finding the common structure shared by two homologous RNAs. Bioinform. Olivier Perriquet, Hélène Touzet, Max Dauchet
2003	J	`jnl`	Tree edit distance with gaps. Inf. Process. Lett. Hélène Touzet
2002	J	`jnl`	A Characterisation of Multiply Recursive Functions with Higman's Lemma. Inf. Comput. Hélène Touzet
2001	J	`jnl`	Algorithms with polynomial interpretation termination proof. J. Funct. Program. Guillaume Bonfante, Adam Cichon, Jean-Yves Marion, Hélène Touzet
1999	—	`conf`	A Characterisation of Multiply Recursive Functions with Higman's Lemma. RTA Hélène Touzet
1998	A*	`conf`	A Complex Example of a Simplifying Rewrite System. ICALP Hélène Touzet
1998	B	`conf`	Complexity Classes and Rewrite Systems with Polynomial Interpretation. CSL Guillaume Bonfante, Adam Cichon, Jean-Yves Marion, Hélène Touzet
1998	B	`conf`	Encoding the Hydra Battle as a Rewrite System. MFCS Hélène Touzet
1997	—	`—`	Propriétés combinatoires pour la terminaison de systèmes de réécriture. (Combinatorial properties for termination in term rewriting theory). Hélène Touzet
1996	—	`conf`	An Ordinal Calculus for Proving Termination in Term Rewriting. CAAP E. A. Cichon, Hélène Touzet