Hui Yu

25 papers B 1Journal 22Unranked 2
YearRankTypeTitle / Venue / Authors
2025 J jnl
Compound Cocrystal Prediction via Dual-View Learning Framework Under Adversarial Consistency and Complementarity Constraints.
Big Data Min. Anal.
Haoyang Yu, Haixin Wang, Bei Zhu, Xue-Xin Wei, Bingxue Du, Hui Yu, Jianyu Shi
2025 J jnl
EnzyControl: Adding Functional and Substrate-Specific Control for Enzyme Backbone Generation.
CoRR
Chao Song, Zhiyuan Liu, Han Huang, Liang Wang, Qiong Wang, Jianyu Shi, Hui Yu, Yihang Zhou, Yang Zhang
2025 J jnl
Predicting the Imbalanced Impact of Drugs on Microbial Abundance Using Multi-View Learning and Data Augmentation.
Big Data Min. Anal.
Bei Zhu, Haoyang Yu, Bing-Xue Du, Hui Yu, Jianyu Shi
2024 — conf
DVL-CC: A Novel Dual-View Learning Framework for Compound Cocrystal Prediction Boosted by View Consistency and Complementarity.
BCB
Haoyang Yu, Bei Zhu, Bing-Xue Du, Xue-Xin Wei, Hui Yu, Jian-Yu Shi
2024 J jnl
GGI-DDI: Identification for key molecular substructures by granule learning to interpret predicted drug-drug interactions.
Expert Syst. Appl.
Hui Yu, Jing Wang, Shiyu Zhao, Omayo Silver, Zun Liu, JingTao Yao, Jian-Yu Shi
2024 J jnl
Identifying the reaction centers of molecule based on dual-view representation.
Knowl. Based Syst.
Hui Yu, Jing Wang, Chao Song, Jian-Yu Shi
2024 J jnl
Multi-view clustering with semantic fusion and contrastive learning.
Neurocomputing
Hui Yu, Hui-Xiang Bian, Zi-Ling Chong, Zun Liu, Jian-Yu Shi
2024 J jnl
Prediction of drug-target binding affinity based on multi-scale feature fusion.
Comput. Biol. Medicine
Hui Yu, Wen-Xin Xu, Tian Tan, Zun Liu, Jian-Yu Shi
2023 J jnl
Attention-based cross domain graph neural network for prediction of drug-drug interactions.
Briefings Bioinform.
Hui Yu, Kangkang Li, Wenmin Dong, Shuanghong Song, Chen Gao, Jianyu Shi
2023 J jnl
DGANDDI: Double Generative Adversarial Networks for Drug-Drug Interaction Prediction.
IEEE ACM Trans. Comput. Biol. Bioinform.
Hui Yu, Kangkang Li, Jianyu Shi
2023 J jnl
Data Augmentation Generated by Generative Adversarial Network for Small Sample Datasets Clustering.
Neural Process. Lett.
Hui Yu, Qiao Feng Wang, Jianyu Shi
2023 B conf
MTGL-ADMET: A Novel Multi-task Graph Learning Framework for ADMET Prediction Enhanced by Status-Theory and Maximum Flow.
RECOMB
Bing-Xue Du, Yi Xu, Siu-Ming Yiu, Hui Yu, Jian-Yu Shi
2022 J jnl
Directed graph attention networks for predicting asymmetric drug-drug interactions.
Briefings Bioinform.
Yi-Yang Feng, Hui Yu, Yue-Hua Feng, Jian-Yu Shi
2022 J jnl
Drug-drug interaction prediction with learnable size-adaptive molecular substructures.
Briefings Bioinform.
Arnold K. Nyamabo, Hui Yu, Zun Liu, Jian-Yu Shi
2022 J jnl
MLGL-MP: a Multi-Label Graph Learning framework enhanced by pathway interdependence for Metabolic Pathway prediction.
Bioinform.
Bing-Xue Du, Peng-Cheng Zhao, Bei Zhu, Siu-Ming Yiu, Arnold K. Nyamabo, Hui Yu, Jian-Yu Shi
2022 J jnl
Predict multi-type drug-drug interactions in cold start scenario.
BMC Bioinform.
Zun Liu, Xing-Nan Wang, Hui Yu, Jian-Yu Shi, Wenmin Dong
2022 J jnl
RANEDDI: Relation-aware network embedding for drug-drug interaction prediction.
Inf. Sci.
Hui Yu, Wenmin Dong, Jianyu Shi
2022 J jnl
STNN-DDI: a Substructure-aware Tensor Neural Network to predict Drug-Drug Interactions.
Briefings Bioinform.
Hui Yu, Shiyu Zhao, Jianyu Shi
2021 J jnl
A three-way density peak clustering method based on evidence theory.
Knowl. Based Syst.
Hui Yu, Luyuan Chen, JingTao Yao
2021 J jnl
SSI-DDI: substructure-substructure interactions for drug-drug interaction prediction.
Briefings Bioinform.
Arnold K. Nyamabo, Hui Yu, Jian-Yu Shi
2021 J jnl
STNN-DDI: A Substructure-aware Tensor Neural Network to Predict Drug-Drug Interactions.
CoRR
Hui Yu, Shiyu Zhao, Jianyu Shi
2019 J jnl
Detecting drug communities and predicting comprehensive drug-drug interactions via balance regularized semi-nonnegative matrix factorization.
J. Cheminformatics
Jian-Yu Shi, Kui-Tao Mao, Hui Yu, Siu-Ming Yiu
2019 J jnl
Emergency Alternative Selection Based on an E-IFWA Approach.
IEEE Access
Luyuan Chen, Hui Yu
2018 J jnl
Predicting and understanding comprehensive drug-drug interactions via semi-nonnegative matrix factorization.
BMC Syst. Biol.
Hui Yu, Kui-Tao Mao, Jian-Yu Shi, Hua Huang, Zhi Chen, Kai Dong, Siu-Ming Yiu
2017 — conf
Identifying Top-K Important Nodes Based on Probabilistic-Jumping Random Walk in Complex Networks.
COMPLEX NETWORKS
Hui Yu, Luyuan Chen, Xi Cao, Zun Liu, Yongjun Li