Hui Lu

37 papers Journal 34Unranked 3
YearRankTypeTitle / Venue / Authors
2026 J jnl
A causal bidirectional selective state space model for imaging genetics in neurodegenerative diseases.
Neural Networks
Hongrui Liu, Yuanyuan Gui, Binglei Zhao, Hui Lu, Manhua Liu
2025 J jnl
A novel prognostic framework for HBV-infected hepatocellular carcinoma: insights from ferroptosis and iron metabolism proteomics.
Briefings Bioinform.
Zhiwei Cheng, Yongyong Ren, Xinbo Wang, Yuening Zhang, Yingqi Hua, Hongyu Zhao, Hui Lu
2025 J jnl
scGO: interpretable deep neural network for cell status annotation and disease diagnosis.
Briefings Bioinform.
You Wu, Pengfei Xu, Liyuan Wang, Shuai Liu, Yingnan Hou, Hui Lu, Peng Hu, Xiaofei Li, Xiang Yu
2024 J jnl
A sparse transformer generation network for brain imaging genetic association.
Pattern Recognit.
Hongrui Liu, Yuanyuan Gui, Hui Lu, Manhua Liu
2024 J jnl
Transformer with convolution and graph-node co-embedding: An accurate and interpretable vision backbone for predicting gene expressions from local histopathological image.
Medical Image Anal.
Xiao Xiao, Yan Kong, Ronghan Li, Zuoheng Wang, Hui Lu
2023 J jnl
CARE as a wearable derived feature linking circadian amplitude to human cognitive functions.
npj Digit. Medicine
Shuya Cui, Qingmin Lin, Yuanyuan Gui, Yunting Zhang, Hui Lu, Hongyu Zhao, Xiaolei Wang, Xinyue Li, Fan Jiang
2023 J jnl
Comprehensive Analysis of Ubiquitously Expressed Genes in Humans from A Data-driven Perspective.
Genom. Proteom. Bioinform.
Jianlei Gu, Jiawei Dai, Hui Lu, Hongyu Zhao
2023 J jnl
HBV-infected hepatocellular carcinoma can be robustly classified into three clinically relevant subgroups by a novel analytical protocol.
Briefings Bioinform.
Zhiwei Cheng, Leijie Li, Yuening Zhang, Yongyong Ren, Jianlei Gu, Xinbo Wang, Hongyu Zhao, Hui Lu
2023 J jnl
Superresolved spatial transcriptomics transferred from a histological context.
Appl. Intell.
Shu Wang, Xiaocheng Zhou, Yan Kong, Hui Lu
2023 J jnl
diseaseGPS: auxiliary diagnostic system for genetic disorders based on genotype and phenotype.
Bioinform.
Daoyi Huang, Jianping Jiang, Tingting Zhao, Shengnan Wu, Pin Li, Yongfen Lyu, Jincai Feng, Mingyue Wei, Zhixing Zhu, Jianlei Gu, Yongyong Ren, Guangjun Yu, Hui Lu
2022 J jnl
A meta-learning approach to improving radiation response prediction in cancers.
Comput. Biol. Medicine
Yuening Zhang, Li Qiu, Yongyong Ren, Zhiwei Cheng, Leijie Li, Siqiong Yao, Chengdong Zhang, Zhiguo Luo, Hui Lu
2022 J jnl
MZINBVA: variational approximation for multilevel zero-inflated negative-binomial models for association analysis in microbiome surveys.
Briefings Bioinform.
Tiantian Liu, Peirong Xu, Yueyao Du, Hui Lu, Hongyu Zhao, Tao Wang
2022 J jnl
scBERT as a large-scale pretrained deep language model for cell type annotation of single-cell RNA-seq data.
Nat. Mac. Intell.
Fan Yang, Wenchuan Wang, Fang Wang, Yuan Fang, Duyu Tang, Junzhou Huang, Hui Lu, Jianhua Yao
2020 J jnl
Predicting viral exposure response from modeling the changes of co-expression networks using time series gene expression data.
BMC Bioinform.
Fangli Dong, Yong He, Tao Wang, Dong Han, Hui Lu, Hongyu Zhao
2019 J jnl
CellSim: a novel software to calculate cell similarity and identify their co-regulation networks.
BMC Bioinform.
Leijie Li, Dongxue Che, Xiaodan Wang, Peng Zhang, Siddiq Ur Rahman, Jianbang Zhao, Jiantao Yu, Shiheng Tao, Hui Lu, Mingzhi Liao
2019 J jnl
Identifying and characterizing the effects of calendar and environmental conditions on pediatric admissions in Shanghai.
J. Big Data
Guang-Jun Yu, Jianlei Gu, Wenbin Cui, Jianping Jiang, Yang Wang, Georgi Z. Genchev, Ting Lu, Hui Lu
2019 J jnl
Residue-Specific Force Field Improving the Sample of Intrinsically Disordered Proteins and Folded Proteins.
J. Chem. Inf. Model.
Sheng Yang, Hao Liu, Yangpeng Zhang, Hui Lu, Hai-Feng Chen
2018 J jnl
A new method to measure the semantic similarity from query phenotypic abnormalities to diseases based on the human phenotype ontology.
BMC Bioinform.
Xiaofeng Gong, Jianping Jiang, Zhongqu Duan, Hui Lu
2018 J jnl
A novel joint analysis framework improves identification of differentially expressed genes in cross disease transcriptomic analysis.
BioData Min.
Wenyi Qin, Hui Lu
2017 — conf
Prediction of human QT prolongation liability based on pre-clinical RNA expression profiles.
BIBM
Dennis M. Bergau, Cong Liu, Hui Lu
2016 — conf
A novel scoring estimator to screening for oncogenic chimeric transcripts in cancer transcriptome sequencing.
BIBM
Jianlei Gu, Yao Lu, Shi-Yi Liu, Cong Liu, Hui Lu
2016 J jnl
Gut microbiota community adaption during young children fecal microbiota transplantation by 16s rDNA sequencing.
Neurocomputing
Jianlei Gu, Yi-Zhong Wang, Shi-Yi Liu, Guang-Jun Yu, Ting Zhang, Hui Lu
2016 J jnl
High-dimensional omics data analysis using a variable screening protocol with prior knowledge integration (SKI).
BMC Syst. Biol.
Cong Liu, Jianping Jiang, Jianlei Gu, Zhangsheng Yu, Tao Wang, Hui Lu
2016 — conf
Implementation of a city-wide Health Information Exchange solution in the largest metropolitan region in China.
BIBM
Guang-Jun Yu, Wenbin Cui, Li Zhou, David W. Bates, Jianlei Gu, Hui Lu
2016 J jnl
Meta-analysis of sex differences in gene expression in schizophrenia.
BMC Syst. Biol.
Wenyi Qin, Cong Liu, Monsheel Sodhi, Hui Lu
2015 J jnl
A novel essential domain perspective for exploring gene essentiality.
Bioinform.
Yao Lu, Yulan Lu, Jingyuan Deng, Hai Peng, Hui Lu, Long Jason Lu
2014 J jnl
Predicting essential genes for identifying potential drug targets in Aspergillus fumigatus.
Comput. Biol. Chem.
Yao Lu, Jingyuan Deng, Judith C. Rhodes, Hui Lu, Long Jason Lu
2012 J jnl
A structure-based protocol for learning the family-specific mechanisms of membrane-binding domains.
Bioinform.
Morten Källberg, Nitin Bhardwaj, Robert E. Langlois, Hui Lu
2010 J jnl
An improved machine learning protocol for the identification of correct Sequest search results.
BMC Bioinform.
Morten Källberg, Hui Lu
2010 J jnl
Analysis of Combinatorial Regulation: Scaling of Partnerships between Regulators with the Number of Governed Targets.
PLoS Comput. Biol.
Nitin Bhardwaj, Matthew B. Carson, Alexej Abyzov, Koon-Kiu Yan, Hui Lu, Mark B. Gerstein
2010 J jnl
Genome-wide sequence-based prediction of peripheral proteins using a novel semi-supervised learning technique.
BMC Bioinform.
Nitin Bhardwaj, Mark Gerstein, Hui Lu
2010 J jnl
NAPS: a residue-level nucleic acid-binding prediction server.
Nucleic Acids Res.
Matthew B. Carson, Robert E. Langlois, Hui Lu
2009 J jnl
Co-Expression among Constituents of a Motif in the protein-protein Interaction Network.
J. Bioinform. Comput. Biol.
Nitin Bhardwaj, Hui Lu
2007 J jnl
Finding new structural and sequence attributes to predict possible disease association of single amino acid polymorphism (SAP).
Bioinform.
Zhi-Qiang Ye, Shuqi Zhao, Ge Gao, Xiao-Qiao Liu, Robert E. Langlois, Hui Lu, Liping Wei
2007 J jnl
MeTaDoR: a comprehensive resource for membrane targeting domains and their host proteins.
Bioinform.
Nitin Bhardwaj, Robert V. Stahelin, Guijun Zhao, Wonhwa Cho, Hui Lu
2005 J jnl
Correlation between gene expression profiles and protein-protein interactions within and across genomes.
Bioinform.
Nitin Bhardwaj, Hui Lu
2005 J jnl
Improved protein fold assignment using support vector machines.
Int. J. Bioinform. Res. Appl.
Robert E. Langlois, Alice Diec, Ognjen Perisic, Yang Dai, Hui Lu