Hugo López-Fernández

45 papers Misc 16Journal 28Unranked 1
YearRankTypeTitle / Venue / Authors
2026 J jnl
PIBAdb: a public cohort of multimodal colonoscopy videos and images including polyps with histological information.
Comput. Methods Programs Biomed.
Alba Nogueira-Rodríguez, Rubén Domínguez-Carbajales, Fernando Campos-Tato, Jesús Herrero, Manuel Puga, Laura Rivas, Eloy Sánchez, Águeda Iglesias, Laura Codesido, Ástrid Irene Díez-Martín, Pedro Davila-Piñón, Joaquín Cubiella, Florentino Fdez-Riverola, Hugo López-Fernández, Daniel Glez-Peña, Miguel Reboiro-Jato
2025 J jnl
Fcodes update: a kinship encoding framework with F-Tree GUI & LLM inference.
J. Integr. Bioinform.
Daniel Pérez-Rodríguez, Roberto C. Agís-Balboa, Hugo López-Fernández
2025 J jnl
Towards a more accurate and reliable evaluation of machine learning protein-protein interaction prediction model performance in the presence of unavoidable dataset biases.
J. Integr. Bioinform.
Alba Nogueira-Rodríguez, Daniel Glez-Peña, Cristina P. Vieira, Jorge Vieira, Hugo López-Fernández
2024 J jnl
Auto-phylo v2 and auto-phylo-pipeliner: building advanced, flexible, and reusable pipelines for phylogenetic inferences, estimation of variability levels and identification of positively selected amino acid sites.
J. Integr. Bioinform.
Hugo López-Fernández, Miguel Pinto, Cristina P. Vieira, Pedro Duque, Miguel Reboiro-Jato, Jorge Vieira
2024 J jnl
Inferences on the evolution of the ascorbic acid synthesis pathway in insects using Phylogenetic Tree Collapser (PTC), a tool for the automated collapsing of phylogenetic trees using taxonomic information.
J. Integr. Bioinform.
Daniel Glez-Peña, Hugo López-Fernández, Pedro Duque, Cristina P. Vieira, Jorge Vieira
2024 J jnl
SEDA 2024 update: enhancing the SEquence DAtaset builder for seamless integration into automated data analysis pipelines.
BMC Bioinform.
Miguel Reboiro-Jato, Daniel Pérez-Rodríguez, Miguel José Da Silva, David Vila-Fernández, Cristina P. Vieira, Jorge Vieira, Hugo López-Fernández
2023 Misc conf
Auto-phylo: A Pipeline Maker for Phylogenetic Studies.
PACBB
Hugo López-Fernández, Miguel Pinto, Cristina P. Vieira, Pedro Duque, Miguel Reboiro-Jato, Jorge Vieira
2023 J jnl
On the identification of potential novel therapeutic targets for spinocerebellar ataxia type 1 (SCA1) neurodegenerative disease using EvoPPI3.
J. Integr. Bioinform.
André D. Sousa, Sara Rocha, Jorge Vieira, Miguel Reboiro-Jato, Hugo López-Fernández, Cristina P. Vieira
2023 J jnl
PanDrugs2: prioritizing cancer therapies using integrated individual multi-omics data.
Nucleic Acids Res.
María José Jiménez-Santos, Alba Nogueira-Rodríguez, Elena Piñeiro-Yáñez, Hugo López-Fernández, Santiago García-Martín, Paula Gómez-Plana, Miguel Reboiro-Jato, Gonzalo Gómez-López, Daniel Glez-Peña, Fátima Al-Shahrour
2022 Misc conf
EvoPPI 2: A Web and Local Platform for the Comparison of Protein-Protein Interaction Data from Multiple Sources from the Same and Distinct Species.
PACBB
Miguel Reboiro-Jato, Jorge Vieira, Sara Rocha, André D. Sousa, Hugo López-Fernández, Cristina P. Vieira
2022 J jnl
Real-time polyp detection model using convolutional neural networks.
Neural Comput. Appl.
Alba Nogueira-Rodríguez, Rubén Domínguez-Carbajales, Fernando Campos-Tato, Jesús Herrero, Manuel Puga, David Remedios, Laura Rivas, Eloy Sánchez, Águeda Iglesias, Joaquín Cubiella, Florentino Fdez-Riverola, Hugo López-Fernández, Miguel Reboiro-Jato, Daniel Glez-Peña
2022 J jnl
SEDA: A Desktop Tool Suite for FASTA Files Processing.
IEEE ACM Trans. Comput. Biol. Bioinform.
Hugo López-Fernández, Pedro Duque, Noé Vázquez, Florentino Fdez-Riverola, Miguel Reboiro-Jato, Cristina P. Vieira, Jorge Vieira
2022 Misc conf
Towards a Flexible and Portable Workflow for Analyzing miRNA-Seq Neuropsychiatric Data: An Initial Replicability Assessment.
PACBB
Daniel Pérez-Rodríguez, Mateo Pérez-Rodríguez, Roberto C. Agís-Balboa, Hugo López-Fernández
2021 J jnl
Application of miRNA-seq in neuropsychiatry: A methodological perspective.
Comput. Biol. Medicine
Daniel Pérez-Rodríguez, Hugo López-Fernández, Roberto C. Agís-Balboa
2021 J jnl
Compi: a framework for portable and reproducible pipelines.
PeerJ Comput. Sci.
Hugo López-Fernández, Osvaldo Graña-Castro, Alba Nogueira-Rodríguez, Miguel Reboiro-Jato, Daniel Glez-Peña
2021 J jnl
DREIMT: a drug repositioning database and prioritization tool for immunomodulation.
Bioinform.
Kevin Troulé, Hugo López-Fernández, Santiago García-Martín, Miguel Reboiro-Jato, Carlos Carretero-Puche, Jordi Martorell-Marugan, Guillermo Martín-Serrano, Pedro Carmona-Saez, Daniel Glez-Peña, Fátima Al-Shahrour, Gonzalo Gómez-López
2021 J jnl
Deep Neural Networks approaches for detecting and classifying colorectal polyps.
Neurocomputing
Alba Nogueira-Rodríguez, Rubén Domínguez-Carbajales, Hugo López-Fernández, Águeda Iglesias, Joaquín Cubiella, Florentino Fdez-Riverola, Miguel Reboiro-Jato, Daniel Glez-Peña
2021 Misc conf
On the Reproducibility of MiRNA-Seq Differential Expression Analyses in Neuropsychiatric Diseases.
PACBB
Daniel Pérez-Rodríguez, Hugo López-Fernández, Roberto C. Agís-Balboa
2021 Misc conf
The pegi3s Bioinformatics Docker Images Project.
PACBB
Hugo López-Fernández, Pedro Ferreira, Miguel Reboiro-Jato, Cristina P. Vieira, Jorge Vieira
2020 Misc conf
Compi Hub: A Public Repository for Sharing and Discovering Compi Pipelines.
PACBB
Alba Nogueira-Rodríguez, Hugo López-Fernández, Osvaldo Graña-Castro, Miguel Reboiro-Jato, Daniel Glez-Peña
2020 Misc conf
Inferences on Mycobacterium Leprae Host Immune Response Escape and Antibiotic Resistance Using Genomic Data and GenomeFastScreen.
PACBB
Hugo López-Fernández, Cristina P. Vieira, Florentino Fdez-Riverola, Miguel Reboiro-Jato, Jorge Vieira
2019 J jnl
DEWE: A novel tool for executing differential expression RNA-Seq workflows in biomedical research.
Comput. Biol. Medicine
Hugo López-Fernández, Aitor Blanco-Míguez, Florentino Fdez-Riverola, Borja Sánchez, Anália Lourenço
2019 — conf
Deep Learning Techniques for Real Time Computer-Aided Diagnosis in Colorectal Cancer.
DCAI (Special Sessions)
Alba Nogueira-Rodríguez, Hugo López-Fernández, Daniel Glez-Peña
2019 Misc conf
Inferring Positive Selection in Large Viral Datasets.
PACBB
Hugo López-Fernández, Pedro Duque, Noé Vázquez, Florentino Fdez-Riverola, Miguel Reboiro-Jato, Cristina P. Vieira, Jorge Vieira
2019 Misc conf
Proposal of a New Bioinformatics Pipeline for Metataxonomics in Precision Medicine.
PACBB
Osvaldo Graña-Castro, Hugo López-Fernández, Florentino Fdez-Riverola, Fátima Al-Shahrour, Daniel Glez-Peña
2018 Misc conf
A Bioinformatics Protocol for Quickly Creating Large-Scale Phylogenetic Trees.
PACBB
Hugo López-Fernández, Pedro Duque, Sílvia Henriques, Noé Vázquez, Florentino Fdez-Riverola, Cristina P. Vieira, Miguel Reboiro-Jato, Jorge Vieira
2018 J jnl
Bicycle: a bioinformatics pipeline to analyze bisulfite sequencing data.
Bioinform.
Osvaldo Graña, Hugo López-Fernández, Florentino Fdez-Riverola, David G. Pisano, Daniel Glez-Peña
2018 Misc conf
EvoPPI: A Web Application to Compare Protein-Protein Interactions (PPIs) from Different Databases and Species.
PACBB
Noé Vázquez, Sara Rocha, Hugo López-Fernández, André Torres, Rui Camacho, Florentino Fdez-Riverola, Jorge Vieira, Cristina P. Vieira, Miguel Reboiro-Jato
2018 J jnl
Perceptions of the use of intelligent information access systems in university level active learning activities among teachers of biomedical subjects.
Int. J. Medical Informatics
Fernando Aparicio, Maria de la Luz Morales-Botello, Margarita Rubio, Asunción Hernando, Rafael Muñoz, Hugo López-Fernández, Daniel Glez-Peña, Florentino Fdez-Riverola, Manuel de la Villa, Manuel J. Maña López, Diego Gachet, Manuel de Buenaga Rodríguez
2018 J jnl
S2P: A software tool to quickly carry out reproducible biomedical research projects involving 2D-gel and MALDI-TOF MS protein data.
Comput. Methods Programs Biomed.
Hugo López-Fernández, Jose E. Araújo, Susana Jorge, Daniel Glez-Peña, Miguel Reboiro-Jato, Hugo Miguel Santos, Florentino Fdez-Riverola, José L. Capelo
2017 Misc conf
Automated Collection and Sharing of Adaptive Amino Acid Changes Data.
PACBB
Noé Vázquez, Cristina P. Vieira, Bárbara S. R. Amorim, André Torres, Hugo López-Fernández, Florentino Fdez-Riverola, José L. R. Sousa, Miguel Reboiro-Jato, Jorge Vieira
2017 J jnl
RUbioSeq+: A multiplatform application that executes parallelized pipelines to analyse next-generation sequencing data.
Comput. Methods Programs Biomed.
Miriam Rubio-Camarillo, Hugo López-Fernández, Gonzalo Gómez-López, Angel Carro, José María Fernández, Coral Fustero Torre, Florentino Fdez-Riverola, Daniel Glez-Peña
2017 Misc conf
S2P: A Desktop Application for Fast and Easy Processing of 2D-Gel and MALDI-Based Mass Spectrometry Protein Data.
PACBB
Hugo López-Fernández, Jose E. Araújo, Daniel Glez-Peña, Miguel Reboiro-Jato, Florentino Fdez-Riverola, José Luis Capelo-Martínez
2016 J jnl
LA-iMageS: a software for elemental distribution bioimaging using LA-ICP-MS data.
J. Cheminformatics
Hugo López-Fernández, Gustavo de S. Pessôa, Marco A. Z. Arruda, José Luis Capelo-Martínez, Florentino Fdez-Riverola, Daniel Glez-Peña, Miguel Reboiro-Jato
2016 Misc conf
RUbioSeq+: An Application that Executes Parallelized Pipelines to Analyse Next-Generation Sequencing Data.
PACBB
Miriam Rubio-Camarillo, Hugo López-Fernández, Gonzalo Gómez-López, Angel Carro, José María Fernández, Florentino Fdez-Riverola, Daniel Glez-Peña, David G. Pisano
2015 J jnl
Mass-Up: an all-in-one open software application for MALDI-TOF mass spectrometry knowledge discovery.
BMC Bioinform.
Hugo López-Fernández, Hugo Miguel Santos, José L. Capelo, Florentino Fdez-Riverola, Daniel Glez-Peña, Miguel Reboiro-Jato
2014 J jnl
A comprehensive analysis about the influence of low-level preprocessing techniques on mass spectrometry data for sample classification.
Int. J. Data Min. Bioinform.
Hugo López-Fernández, Miguel Reboiro-Jato, Daniel Glez-Peña, Florentino Fernández Riverola
2014 J jnl
Web scraping technologies in an API world.
Briefings Bioinform.
Daniel Glez-Peña, Anália Lourenço, Hugo López-Fernández, Miguel Reboiro-Jato, Florentino Fdez-Riverola
2013 Misc conf
A Workflow for the Application of Biclustering to Mass Spectrometry Data.
PACBB
Hugo López-Fernández, Miguel Reboiro-Jato, Sara C. Madeira, Rubén López-Cortés, J. D. Nunes-Miranda, Hugo Miguel Santos, Florentino Fdez-Riverola, Daniel Glez-Peña
2013 J jnl
BioAnnote: A software platform for annotating biomedical documents with application in medical learning environments.
Comput. Methods Programs Biomed.
Hugo López-Fernández, Miguel Reboiro-Jato, Daniel Glez-Peña, Fernando Aparicio, Diego Gachet, Manuel Buenaga, Florentino Fdez-Riverola
2013 J jnl
genEnsemble: A new model for the combination of classifiers and integration of biological knowledge applied to genomic data.
Expert Syst. Appl.
Miguel Reboiro-Jato, Rosalía Laza, Hugo López-Fernández, Daniel Glez-Peña, Fernando Díaz, Florentino Fdez-Riverola
2012 J jnl
A JAVA application framework for scientific software development.
Softw. Pract. Exp.
Florentino Fdez-Riverola, Daniel Glez-Peña, Hugo López-Fernández, Miguel Reboiro-Jato, José Ramón Méndez
2012 Misc conf
Applying AIBench Framework to Develop Rich User Interfaces in NGS Studies.
PACBB
Hugo López-Fernández, Daniel Glez-Peña, Miguel Reboiro-Jato, Gonzalo Gómez-López, David G. Pisano, Florentino Fdez-Riverola
2011 J jnl
PileLineGUI: a desktop environment for handling genome position files in next-generation sequencing studies.
Nucleic Acids Res.
Hugo López-Fernández, Daniel Glez-Peña, Miguel Reboiro-Jato, Gonzalo Gómez-López, David G. Pisano, Florentino Fdez-Riverola
2011 J jnl
Rapid development of proteomic applications with the AIBench framework.
J. Integr. Bioinform.
Hugo López-Fernández, Miguel Reboiro-Jato, Daniel Glez-Peña, José Ramón Méndez Reboredo, Hugo Miguel Santos, Ricardo Jorge Carreira, José Luis Capelo-Martínez, Florentino Fdez-Riverola