Huaiqiu Zhu

32 papers Journal 23Unranked 9
YearRankTypeTitle / Venue / Authors
2026 J jnl
A novel deep learning-driven framework for improving lncRNA comprehensive annotation with LncADeep 2.0.
Bioinform.
Yiyan Zhou, Jiaheng Hou, Haoling Xie, Nuoshi Lin, Cheng Yang, Hengchuang Yin, Wanqiu Ding, Huaiqiu Zhu
2024 — conf
Predicting Microbial Community Productivity Based-On Genomic Sequences with Graph Neural Network.
CISP-BMEI
Jiaheng Hou, Peter X. Geng, Zhikai Wu, Wenlin Fan, Huaiqiu Zhu
2023 — conf
Computer Simulation of Gene Knockout in Bacteria Accelerated by AI.
CISP-BMEI
Peter X. Geng, Jiaheng Hou, Huaiqiu Zhu
2022 J jnl
HoPhage: an ab initio tool for identifying hosts of phage fragments from metaviromes.
Bioinform.
Jie Tan, Zhencheng Fang, Shufang Wu, Qian Guo, Xiaoqing Jiang, Huaiqiu Zhu
2021 — conf
AI-aided Data Mining in Gut Microbiome: The Road to Precision Medicine.
CISP-BMEI
Xiaoqing Jiang, Congmin Xu, Qian Guo, Huaiqiu Zhu
2021 J jnl
LightCUD: a program for diagnosing IBD based on human gut microbiome data.
BioData Min.
Congmin Xu, Man Zhou, Zhongjie Xie, Mo Li, Xi Zhu, Huaiqiu Zhu
2021 J jnl
LncADeep performance on full-length transcripts.
Nat. Mach. Intell.
Cheng Yang, Man Zhou, Haoling Xie, Huaiqiu Zhu
2020 — conf
An Error Correction Method of Nanopore Sequencing Data Using Deep Learning.
CISP-BMEI
Luotong Wang, Li Qu, Longshu Yang, Yiying Wang, Huaiqiu Zhu
2020 J jnl
PlasGUN: gene prediction in plasmid metagenomic short reads using deep learning.
Bioinform.
Zhencheng Fang, Jie Tan, Shufang Wu, Mo Li, Chunhui Wang, Yongchu Liu, Huaiqiu Zhu
2019 J jnl
How Microbes Shape Their Communities? A Microbial Community Model Based on Functional Genes.
Genom. Proteom. Bioinform.
Xiaoqing Jiang, Xin Li, Longshu Yang, Chunhong Liu, Qi Wang, Weilai Chi, Huaiqiu Zhu
2018 — conf
A Novel Compression Algorithm for High-Throughput DNA Sequence Based on Huffman Coding Method.
CISP-BMEI
Chuan He, Huaiqiu Zhu
2018 J jnl
LncADeep: an ab initio lncRNA identification and functional annotation tool based on deep learning.
Bioinform.
Cheng Yang, Longshu Yang, Man Zhou, Haoling Xie, Chengjiu Zhang, May D. Wang, Huaiqiu Zhu
2018 — conf
Micro-Inversions In Human Cancer Genomes.
EMBC
Li Qu, Huaiqiu Zhu, May D. Wang
2017 J jnl
MetaComp: comprehensive analysis software for comparative meta-omics including comparative metagenomics.
BMC Bioinform.
Peng Zhai, Longshu Yang, Xiao Guo, Zhe Wang, Jiangtao Guo, Xiaoqi Wang, Huaiqiu Zhu
2016 — conf
Examining the neural correlates of depressive and motor symptoms in Parkinson's disease using Frequency Component Analysis (FCA).
Biomedical Applications in Molecular, Structural, and Functional Imaging
Xiaopeng Song, Xiao Hu, Shuqin Zhou, Weiguo Liu, Yijun Liu, Huaiqiu Zhu, Jia-Hong Gao
2016 J jnl
Identifying micro-inversions using high-throughput sequencing reads.
BMC Genom.
Feifei He, Yang Li, Yu-Hang Tang, Jian Ma, Huaiqiu Zhu
2015 J jnl
InteMAP: Integrated metagenomic assembly pipeline for NGS short reads.
BMC Bioinform.
Binbin Lai, Fumeng Wang, Xiaoqi Wang, Liping Duan, Huaiqiu Zhu
2013 J jnl
Gene prediction in metagenomic fragments based on the SVM algorithm.
BMC Bioinform.
Yongchu Liu, Jiangtao Guo, Gang-Qing Hu, Huaiqiu Zhu
2012 J jnl
A
Bioinform.
Binbin Lai, Ruogu Ding, Yang Li, Liping Duan, Huaiqiu Zhu
2011 — conf
A de novo assembly method for metagenomic DNA reads with mate pairs.
BMEI
Binbin Lai, Ruogu Ding, Huaiqiu Zhu
2011 J jnl
A mutation degree model for the identification of transcriptional regulatory elements.
BMC Bioinform.
Changqing Zhang, Jin Wang, Xu Hua, Jinggui Fang, Huaiqiu Zhu, Xiang Gao
2011 — conf
Gene prediction in metagenomic fragments based on the SVM algorithm.
BMEI
Yongchu Liu, Jiangtao Guo, Huaiqiu Zhu
2009 J jnl
MetaTISA: Metagenomic Translation Initiation Site Annotator for improving gene start prediction.
Bioinform.
Gang-Qing Hu, Jiangtao Guo, Yongchu Liu, Huaiqiu Zhu
2009 J jnl
Prediction of translation initiation site for microbial genomes with TriTISA.
Bioinform.
Gang-Qing Hu, Xiaobin Zheng, Huaiqiu Zhu, Zhen-Su She
2008 J jnl
A dynamic Bayesian network approach to protein secondary structure prediction.
BMC Bioinform.
Xin-Qiu Yao, Huaiqiu Zhu, Zhen-Su She
2008 J jnl
Computational evaluation of TIS annotation for prokaryotic genomes.
BMC Bioinform.
Gang-Qing Hu, Xiaobin Zheng, Lining Ju, Huaiqiu Zhu, Zhen-Su She
2008 J jnl
ProTISA: a comprehensive resource for translation initiation site annotation in prokaryotic genomes.
Nucleic Acids Res.
Gang-Qing Hu, Xiaobin Zheng, Yi-Fan Yang, Philippe Ortet, Zhen-Su She, Huaiqiu Zhu
2007 J jnl
MED: a new non-supervised gene prediction algorithm for bacterial and archaeal genomes.
BMC Bioinform.
Huaiqiu Zhu, Gang-Qing Hu, Yi-Fan Yang, Jin Wang, Zhen-Su She
2007 J jnl
Tree and rate estimation by local evaluation of heterochronous nucleotide data.
Bioinform.
Zhu Yang, John D. O'Brien, Xiaobin Zheng, Huaiqiu Zhu, Zhen-Su She
2004 J jnl
Accuracy improvement for identifying translation initiation sites in microbial genomes.
Bioinform.
Huaiqiu Zhu, Gang-Qing Hu, Zheng-Qing Ouyang, Jin Wang, Zhen-Su She
2004 J jnl
Enrichment of transcriptional regulatory sites in non-coding genomic region.
Bioinform.
Wen Xue, Jin Wang, Zhirong Shen, Huaiqiu Zhu
2004 J jnl
Multivariate Entropy Distance Method for Prokaryotic Gene Identification.
J. Bioinform. Comput. Biol.
Zheng-Qing Ouyang, Huaiqiu Zhu, Jin Wang, Zhen-Su She