Huai-Kuang Tsai

30 papers A 4B 1Misc 1Journal 19Unranked 5
YearRankTypeTitle / Venue / Authors
2025 J jnl
A large language model framework for literature-based disease-gene association prediction.
Briefings Bioinform.
Peng-Hsuan Li, Yih-Yun Sun, Hsueh-Fen Juan, Chien-Yu Chen, Huai-Kuang Tsai, Jia-Hsin Huang
2023 J jnl
A feature extraction free approach for protein interactome inference from co-elution data.
Briefings Bioinform.
Yu-Hsin Chen, Kuan-Hao Chao, Jin Yung Wong, Chien-Fu Liu, Jun-Yi Leu, Huai-Kuang Tsai
2023 J jnl
Short human eccDNAs are predictable from sequences.
Briefings Bioinform.
Kai-Li Chang, Jia-Hong Chen, Tzu-Chieh Lin, Jun-Yi Leu, Cheng-Fu Kao, Jin Yung Wong, Huai-Kuang Tsai
2022 J jnl
pubmedKB: an interactive web server for exploring biomedical entity relations in the biomedical literature.
Nucleic Acids Res.
Peng-Hsuan Li, Ting-Fu Chen, Jheng-Ying Yu, Shang-Hung Shih, Chan-Hung Su, Yin-Hung Lin, Huai-Kuang Tsai, Hsueh-Fen Juan, Chien-Yu Chen, Jia-Hsin Huang
2019 J jnl
CATANA: a tool for generating comprehensive annotations of alternative transcript events.
Bioinform.
Cheng-Kai Shiau, Jia-Hsin Huang, Huai-Kuang Tsai
2017 J jnl
IsoPlot: a database for comparison of mRNA isoforms in fruit fly and mosquitoes.
Database J. Biol. Databases Curation
I-Man Ng, Jia-Hsin Huang, Shang-Chi Tsai, Huai-Kuang Tsai
2015 J jnl
Contribution of Sequence Motif, Chromatin State, and DNA Structure Features to Predictive Models of Transcription Factor Binding in Yeast.
PLoS Comput. Biol.
Zing Tsung-Yeh Tsai, Shin-Han Shiu, Huai-Kuang Tsai
2012 J jnl
The Impact of Normalization and Phylogenetic Information on Estimating the Distance for Metagenomes.
IEEE ACM Trans. Comput. Biol. Bioinform.
Chien-Hao Su, Tse-Yi Wang, Ming-Tsung Hsu, Francis Cheng-Hsuan Weng, Cheng-Yan Kao, Daryi Wang, Huai-Kuang Tsai
2011 J jnl
MetaABC - an integrated metagenomics platform for data adjustment, binning and clustering.
Bioinform.
Chien-Hao Su, Ming-Tsung Hsu, Tse-Yi Wang, Sufeng Chiang, Jen-Hao Cheng, Francis C. Weng, Cheng-Yan Kao, Daryi Wang, Huai-Kuang Tsai
2011 J jnl
MetaRank: a rank conversion scheme for comparative analysis of microbial community compositions.
Bioinform.
Tse-Yi Wang, Chien-Hao Su, Huai-Kuang Tsai
2011 Misc conf
Simultaneous Identification for Synergistic Transcription Factors and their Transcription Factor Binding Sites.
CISIS
Zing Tsung-Yeh Tsai, Grace Tzu-Wei Huang, Huai-Kuang Tsai
2010 J jnl
Reanalyze unassigned reads in Sanger based metagenomic data using conserved gene adjacency.
BMC Bioinform.
Francis C. Weng, Chien-Hao Su, Ming-Tsung Hsu, Tse-Yi Wang, Huai-Kuang Tsai, Daryi Wang
2008 J jnl
Evolutionary conservation of DNA-contact residues in DNA-binding domains.
BMC Bioinform.
Yao-Lin Chang, Huai-Kuang Tsai, Cheng-Yan Kao, Yung-Chiang Chen, Yuh-Jyh Hu, Jinn-Moon Yang
2007 — conf
Evolutionary Conservation of DNA-Contact residues in DNA-binding Domains.
IMSCCS
Yao-Lin Chang, Huai-Kuang Tsai, Cheng-Yan Kao, Yung-Chiang Chen, Jinn-Moon Yang
2007 J jnl
MYBS: a comprehensive web server for mining transcription factor binding sites in yeast.
Nucleic Acids Res.
Huai-Kuang Tsai, Meng-Yuan Chou, Ching Hua Shih, Grace Tzu-Wei Huang, Tien-Hsien Chang, Wen-Hsiung Li
2006 J jnl
Method for identifying transcription factor binding sites in yeast.
Bioinform.
Huai-Kuang Tsai, Grace Tzu-Wei Huang, Meng-Yuan Chou, Henry Horng-Shing Lu, Wen-Hsiung Li
2005 J jnl
Cysteine separations profiles on protein sequences infer disulfide connectivity.
Bioinform.
East Zhao, Hsuan-Liang Liu, Chi-Hung Tsai, Huai-Kuang Tsai, Chen-hsiung Chan, Cheng-Yan Kao
2005 A conf
Improving EAX with restricted 2-opt.
GECCO
Chen-hsiung Chan, Sheng-An Lee, Cheng-Yan Kao, Huai-Kuang Tsai
2004 — conf
A Tool to Determine the Specificity of Antisense Oligonucleotide.
METMBS
Yu-Cheng Huang, Yu-Chih Chao, Shwu-Bin Lin, Huai-Kuang Tsai, Chun-Fan Chang, Sheng-An Lee, Cheng-Yan Kao
2004 J jnl
An Evolutionary Approach for Gene Expression Patterns.
IEEE Trans. Inf. Technol. Biomed.
Huai-Kuang Tsai, Jinn-Moon Yang, Yuan-Fan Tsai, Cheng-Yan Kao
2004 J jnl
An evolutionary algorithm for large traveling salesman problems.
IEEE Trans. Syst. Man Cybern. Part B
Huai-Kuang Tsai, Jinn-Moon Yang, Yuan-Fang Tsai, Cheng-Yan Kao
2004 A conf
Designing Multiple-Use Primer Set for Multiplex PCR by Using Compact GAs.
PPSN
Yu-Cheng Huang, Han-Yu Chuang, Huai-Kuang Tsai, Chun-Fan Chang, Cheng-Yan Kao
2004 — conf
Discovering Statistically Significant Clusters by Using Iterative Genetic Algorithms in Gene Expression Data.
METMBS
Hua-Sheng Chiu, Han-Yu Chuang, Huai-Kuang Tsai, Tao-wei Huang, Cheng-Yan Kao
2004 — conf
Disulfide Connectivity Prediction Using Support Vector Machine and Novel Features.
METMBS
Chi-Hung Tsai, Huai-Kuang Tsai, Shih-Chieh Chen, Cheng-Yan Kao
2004 — conf
Optimal Designs for Microarray Experiments.
ISPAN
Han-Yu Chuang, Huai-Kuang Tsai, Cheng-Yan Kao
2004 J jnl
Some issues of designing genetic algorithms for traveling salesman problems.
Soft Comput.
Huai-Kuang Tsai, Jinn-Moon Yang, Yuan-Fan Tsai, Cheng-Yan Kao
2003 J jnl
Ranking Genes for Discriminability on Microarray Data.
J. Inf. Sci. Eng.
Han-Yu Chuang, Huai-Kuang Tsai, Yuan-Fan Tsai, Cheng-Yan Kao
2002 A conf
Applying Genetic Algorithms To Finding The Optimal Gene Order In Displaying The Microarray Data.
GECCO
Huai-Kuang Tsai, Jinn-Moon Yang, Cheng-Yan Kao
2002 B conf
Solving traveling salesman problems by combining global and local search mechanisms.
IEEE Congress on Evolutionary Computation
Huai-Kuang Tsai, Jinn-Moon Yang, Cheng-Yan Kao
2000 A conf
A Genetic Algorithm for Physical Mapping Problems.
GECCO
Huai-Kuang Tsai, Cheng-Yan Kao, Jinn-Moon Yang