Hsueh-Fen Juan

23 papers C 1Journal 21Unranked 1
YearRankTypeTitle / Venue / Authors
2026 J jnl
scDock: streamlining drug discovery targeting cell-cell communication via scRNA-seq analysis and molecular docking.
Bioinform.
Chen-Hao Huang, Yen-Jen Oyang, Hsuan-Cheng Huang, Hsueh-Fen Juan
2025 J jnl
A large language model framework for literature-based disease-gene association prediction.
Briefings Bioinform.
Peng-Hsuan Li, Yih-Yun Sun, Hsueh-Fen Juan, Chien-Yu Chen, Huai-Kuang Tsai, Jia-Hsin Huang
2023 J jnl
BIC: a database for the transcriptional landscape of bacteria in cancer.
Nucleic Acids Res.
Kai-Pu Chen, Chia-Lang Hsu, Yen-Jen Oyang, Hsuan-Cheng Huang, Hsueh-Fen Juan
2023 J jnl
Context-dependent gene regulatory network reveals regulation dynamics and cell trajectories using unspliced transcripts.
Briefings Bioinform.
Yueh-Hua Tu, Hsueh-Fen Juan, Hsuan-Cheng Huang
2022 J jnl
Phylotranscriptomic patterns of network stochasticity and pathway dynamics during embryogenesis.
Bioinform.
Kuei-Yueh Ko, Cho-Yi Chen, Hsueh-Fen Juan, Hsuan-Cheng Huang
2022 J jnl
pubmedKB: an interactive web server for exploring biomedical entity relations in the biomedical literature.
Nucleic Acids Res.
Peng-Hsuan Li, Ting-Fu Chen, Jheng-Ying Yu, Shang-Hung Shih, Chan-Hung Su, Yin-Hung Lin, Huai-Kuang Tsai, Hsueh-Fen Juan, Chien-Yu Chen, Jia-Hsin Huang
2021 J jnl
DockCoV2: a drug database against SARS-CoV-2.
Nucleic Acids Res.
Ting-Fu Chen, Yu-Chuan Chang, Yi Hsiao, Ko-Han Lee, Yu-Chun Hsiao, Yu-Hsiang Lin, Yi-Chin Ethan Tu, Hsuan-Cheng Huang, Chien-Yu Chen, Hsueh-Fen Juan
2017 J jnl
DynaPho: a web platform for inferring the dynamics of time-series phosphoproteomics.
Bioinform.
Chia-Lang Hsu, Jiankai Wang, Pei-Chun Lu, Hsuan-Cheng Huang, Hsueh-Fen Juan
2015 J jnl
Circadian systems biology in Metazoa.
Briefings Bioinform.
Li-Ling Lin, Hsuan-Cheng Huang, Hsueh-Fen Juan
2014 J jnl
Mirin: identifying microRNA regulatory modules in protein-protein interaction networks.
Bioinform.
Ken-Chi Yang, Chia-Lang Hsu, Chen-Ching Lin, Hsueh-Fen Juan, Hsuan-Cheng Huang
2013 J jnl
ValidNESs: a database of validated leucine-rich nuclear export signals.
Nucleic Acids Res.
Szu-Chin Fu, Hsuan-Cheng Huang, Paul Horton, Hsueh-Fen Juan
2012 J jnl
Crosstalk between transcription factors and microRNAs in human protein interaction network.
BMC Syst. Biol.
Chen-Ching Lin, Ya-Jen Chen, Cho-Yi Chen, Yen-Jen Oyang, Hsueh-Fen Juan, Hsuan-Cheng Huang
2012 J jnl
Lengthening of 3′UTR increases with morphological complexity in animal evolution.
Bioinform.
Cho-Yi Chen, Shui-Tein Chen, Hsueh-Fen Juan, Hsuan-Cheng Huang
2011 J jnl
Coregulation of transcription factors and microRNAs in human transcriptional regulatory network.
BMC Bioinform.
Cho-Yi Chen, Shui-Tein Chen, Chiou-Shann Fuh, Hsueh-Fen Juan, Hsuan-Cheng Huang
2011 J jnl
Integrative network analysis reveals active microRNAs and their functions in gastric cancer.
BMC Syst. Biol.
Chien-Wei Tseng, Chen-Ching Lin, Chiung-Nien Chen, Hsuan-Cheng Huang, Hsueh-Fen Juan
2010 J jnl
Dynamic functional modules in co-expressed protein interaction networks of dilated cardiomyopathy.
BMC Syst. Biol.
Chen-Ching Lin, Jen-Tsung Hsiang, Chia-Yi Wu, Yen-Jen Oyang, Hsueh-Fen Juan, Hsuan-Cheng Huang
2008 J jnl
MeInfoText: associated gene methylation and cancer information from text mining.
BMC Bioinform.
Yu-Ching Fang, Hsuan-Cheng Huang, Hsueh-Fen Juan
2006 J jnl
An agent-based system to discover protein-protein interactions, identify protein complexes and proteins with multiple peptide mass fingerprints.
J. Comput. Chem.
Tzong-Yi Lee, Jorng-Tzong Horng, Hsueh-Fen Juan, Hsien-Da Huang, Li-Cheng Wu, Meng-Feng Tsai, Hsuan-Cheng Huang
2004 C conf
An Efficient Mechanism for Prediction of Protein-Ligand Interactions Based on Analysis of Protein Tertiary Substructures.
BIBE
Darby Tien-Hao Chang, Chien-Yu Chen, Yen-Jen Oyang, Hsueh-Fen Juan, Hsuan-Cheng Huang
2004 J jnl
GeneNetwork: an interactive tool for reconstruction of genetic networks using microarray data.
Bioinform.
Chia-Chin Wu, Hsuan-Cheng Huang, Hsueh-Fen Juan, Shui-Tein Chen
2004 J jnl
Incremental generation of summarized clustering hierarchy for protein family analysis.
Bioinform.
Chien-Yu Chen, Yen-Jen Oyang, Hsueh-Fen Juan
2004 J jnl
ProteMiner-SSM: a web server for efficient analysis of similar protein tertiary substructures.
Nucleic Acids Res.
Darby Tien-Hao Chang, Chien-Yu Chen, Wen-Chin Chung, Yen-Jen Oyang, Hsueh-Fen Juan, Hsuan-Cheng Huang
2003 — conf
Design of an incremental clustering package for protein function and family analysis.
ISMSE
Chien-Yu Chen, Hsueh-Fen Juan, Po-Jen Hsiao, Shui-Tein Chen, Hsiang-Wen Tseng, Yen-Jen Oyang