Hrvoje Bogunovic

118 papers B 2Journal 81Unranked 31

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Exploiting Intermediate Reconstructions in Optical Coherence Tomography for Test-Time Adaption of Medical Image Segmentation. CoRR Thomas Pinetz, Veit Hucke, Hrvoje Bogunovic
2026	—	`ed.`	Ophthalmic Medical Image Analysis - 12th International Workshop, OMIA 2025, Held in Conjunction with MICCAI 2025, Daejeon, South Korea, September 27, 2025, Proceedings OMIA@MICCAI Huihui Fang, Meng Wang, Heng Li, Hao Chen, Hrvoje Bogunovic, Cecilia S. Lee
2026	J	`jnl`	PiPViT: Patch-based Visual Interpretable Prototypes for retinal image analysis. Biomed. Signal Process. Control. Marzieh Oghbaie, Teresa Araújo, Gregor S. Reiter, Hrvoje Bogunovic
2026	J	`jnl`	SD-RetinaNet: Topologically Constrained Semi-Supervised Retinal Lesion and Layer Segmentation in OCT. IEEE Trans. Medical Imaging Botond Fazekas, Guilherme Aresta, Philipp Seeböck, Julia Mai, Ursula Schmidt-Erfurth, Hrvoje Bogunovic
2025	—	`conf`	Advancing OCT-Based Retinal Disease Classification with XLSTM: A Framework for Variable-Length Volume Processing. ISBI Emese Sükei, Marzieh Oghbaie, Ursula Schmidt-Erfurth, Günter Klambauer, Hrvoje Bogunovic
2025	J	`jnl`	Automatic detection and prediction of nAMD activity change in retinal OCT using Siamese networks and Wasserstein Distance for ordinality. CoRR Taha Emre, Teresa Araújo, Marzieh Oghbaie, Dmitry A. Lachinov, Guilherme Aresta, Hrvoje Bogunovic
2025	J	`jnl`	Deep Learning for Retinal Degeneration Assessment: A Comprehensive Analysis of the MARIO AMD Progression Challenge. CoRR Rachid Zeghlache, Ikram Brahim, Pierre-Henri Conze, Mathieu Lamard, Mohammed El Amine Lazouni, Elaouaber Zineb Aziza, Leila Ryma Lazouni, Christopher Nielsen, Ahmad O. Ahsan, Matthias Wilms, Nils D. Forkert, Lovre Antonio Budimir, Ivana Zadro Matovinovic, Donik Vrsnak, Sven Loncaric, Philippe Zhang, Weili Jiang, Yihao Li, Yiding Hao, Markus Frohmann, Patrick Binder, Marcel Huber, Taha Emre, Teresa Araújo, Marzieh Oghbaie, Hrvoje Bogunovic, Amerens A. Bekkers, Nina M. van Liebergen, Hugo J. Kuijf, Abdul Qayyum, Moona Mazher, Steven A. Niederer, Alberto J. Beltrán-Carrero, Juan J. Gómez-Valverde, Javier Torresano-Rodríguez, Álvaro Caballero-Sastre, María J. Ledesma-Carbayo, Yosuke Yamagishi, Yi Ding, Robin Peretzke, Alexandra Ertl, Maximilian Fischer, Jessica Kächele, Sofiane Zehar, Karim Boukli Hacene, Thomas Monfort, Béatrice Cochener, Mostafa El Habib Daho, Anas-Alexis Benyoussef, Gwenolé Quellec
2025	—	`conf`	GARD: Gamma-Based Anatomical Restoration and Denoising for Retinal OCT. OMIA@MICCAI Botond Fazekas, Thomas Pinetz, Guilherme Aresta, Taha Emre, Hrvoje Bogunovic
2025	J	`jnl`	GARD: Gamma-based Anatomical Restoration and Denoising for Retinal OCT. CoRR Botond Fazekas, Thomas Pinetz, Guilherme Aresta, Taha Emre, Hrvoje Bogunovic
2025	J	`jnl`	MIRAGE: Multimodal foundation model and benchmark for comprehensive retinal OCT image analysis. CoRR José Morano, Botond Fazekas, Emese Sükei, Ronald Fecso, Taha Emre, Markus Gumpinger, Georg Faustmann, Marzieh Oghbaie, Ursula Schmidt-Erfurth, Hrvoje Bogunovic
2025	J	`jnl`	Multimodal foundation model and benchmark for comprehensive retinal OCT image analysis. npj Digit. Medicine José Morano, Botond Fazekas, Emese Sükei, Ronald Fecso, Taha Emre, Markus Gumpinger, Georg Faustmann, Marzieh Oghbaie, Ursula Schmidt-Erfurth, Hrvoje Bogunovic
2025	J	`jnl`	PSScreen V2: Partially Supervised Multiple Retinal Disease Screening. CoRR Boyi Zheng, Yalin Zheng, Hrvoje Bogunovic, Qing Liu
2025	J	`jnl`	PiPViT: Patch-based Visual Interpretable Prototypes for Retinal Image Analysis. CoRR Marzieh Oghbaie, Teresa Araújo, Hrvoje Bogunovic
2025	J	`jnl`	Quality assessment of optical coherence tomography angiography images with Relative-distance-based Patch Distribution Modeling (R-PaDiM). Comput. Methods Programs Biomed. Meltem Esengönül, Teresa Araújo, Natasa Jeremic, Azin Zarghami, Hrvoje Bogunovic, Ursula Schmidt-Erfurth
2025	—	`conf`	RetFiner: A Vision-Language Refinement Scheme for Retinal Foundation Models. MICCAI (5) Ronald Fecso, José Morano, Ursula Schmidt-Erfurth, Hrvoje Bogunovic
2025	J	`jnl`	RetFiner: A Vision-Language Refinement Scheme for Retinal Foundation Models. CoRR Ronald Fecso, José Morano, Ursula Schmidt-Erfurth, Hrvoje Bogunovic
2025	J	`jnl`	SD-LayerNet: Robust and label-efficient retinal layer segmentation via anatomical priors. Comput. Methods Programs Biomed. Botond Fazekas, Guilherme Aresta, Dmitry A. Lachinov, Sophie Riedl, Julia Mai, Ursula Schmidt-Erfurth, Hrvoje Bogunovic
2025	J	`jnl`	SD-RetinaNet: Topologically Constrained Semi-Supervised Retinal Lesion and Layer Segmentation in OCT. CoRR Botond Fazekas, Guilherme Aresta, Philipp Seeböck, Julia Mai, Ursula Schmidt-Erfurth, Hrvoje Bogunovic
2025	J	`jnl`	Shape Prior for Quality Assessment in OCTA via Denoising Autoencoders at the Segmentation Level. IEEE Access Hana Jebril, Thomas Pinetz, Hrvoje Bogunovic
2025	J	`jnl`	Specialized curricula for training vision language models in retinal image analysis. npj Digit. Medicine Robbie Holland, Thomas R. P. Taylor, Christopher Holmes, Sophie Riedl, Julia Mai, Maria Patsiamanidi, Dimitra Mitsopoulou, Paul Hager, Philip Müller, Johannes C. Paetzold, Hendrik P. N. Scholl, Hrvoje Bogunovic, Ursula Schmidt-Erfurth, Daniel Rueckert, Sobha Sivaprasad, Andrew J. Lotery, Martin J. Menten, Toby Prevost, Lars Fritsche, Kristina Pfau, Maximilian Pfau
2025	J	`jnl`	Stochastic Siamese MAE Pretraining for Longitudinal Medical Images. CoRR Taha Emre, Arunava Chakravarty, Thomas Pinetz, Dmitry A. Lachinov, Martin J. Menten, Hendrik P. N. Scholl, Sobha Sivaprasad, Daniel Rueckert, Andrew J. Lotery, Stefan Sacu, Ursula Schmidt-Erfurth, Hrvoje Bogunovic
2024	J	`jnl`	3DTINC: Time-Equivariant Non-Contrastive Learning for Predicting Disease Progression From Longitudinal OCTs. IEEE Trans. Medical Imaging Taha Emre, Arunava Chakravarty, Antoine Rivail, Dmitry A. Lachinov, Oliver Leingang, Sophie Riedl, Julia Mai, Hendrik P. N. Scholl, Sobha Sivaprasad, Daniel Rueckert, Andrew J. Lotery, Ursula Schmidt-Erfurth, Hrvoje Bogunovic
2024	J	`jnl`	AIROGS: Artificial Intelligence for Robust Glaucoma Screening Challenge. IEEE Trans. Medical Imaging Coen de Vente, Koenraad A. Vermeer, Nicolas Jaccard, He Wang, Hongyi Sun, Firas Khader, Daniel Truhn, Temirgali Aimyshev, Yerkebulan Zhanibekuly, Tien-Dung Le, Adrian Galdran, Miguel Ángel González Ballester, Gustavo Carneiro, Devika R. G, Hrishikesh Panikkasseril Sethumadhavan, Densen Puthussery, Hong Liu, Zekang Yang, Satoshi Kondo, Satoshi Kasai, Edward Wang, Ashritha Durvasula, Jónathan Heras, Miguel Ángel Zapata, Teresa Araújo, Guilherme Aresta, Hrvoje Bogunovic, Mustafa Arikan, Yeong Chan Lee, Hyun Bin Cho, Yoon Ho Choi, Abdul Qayyum, Imran Razzak, Bram van Ginneken, Hans G. Lemij, Clara I. Sánchez
2024	J	`jnl`	Anomaly guided segmentation: Introducing semantic context for lesion segmentation in retinal OCT using weak context supervision from anomaly detection. Medical Image Anal. Philipp Seeböck, José Ignacio Orlando, Martin Michl, Julia Mai, Ursula Schmidt-Erfurth, Hrvoje Bogunovic
2024	—	`conf`	Automatic Detection and Prediction of nAMD Activity Change in Retinal OCT Using Siamese Networks and Wasserstein Distance for Ordinality. DIAMOND/MARIO@MICCAI Taha Emre, Teresa Araújo, Marzieh Oghbaie, Dmitrii A. Lachinov, Guilherme Aresta, Hrvoje Bogunovic
2024	—	`conf`	Comparative Analysis of Data Augmentation for Retinal OCT Biomarker Segmentation. OMIA@MICCAI Markus Unterdechler, Botond Fazekas, Guilherme Aresta, Hrvoje Bogunovic
2024	J	`jnl`	Deep Multimodal Fusion of Data With Heterogeneous Dimensionality via Projective Networks. IEEE J. Biomed. Health Informatics José Morano, Guilherme Aresta, Christoph Grechenig, Ursula Schmidt-Erfurth, Hrvoje Bogunovic
2024	J	`jnl`	Deep Multimodal Fusion of Data with Heterogeneous Dimensionality via Projective Networks. CoRR José Morano, Guilherme Aresta, Christoph Grechenig, Ursula Schmidt-Erfurth, Hrvoje Bogunovic
2024	J	`jnl`	Deep-learning-based clustering of OCT images for biomarker discovery in age-related macular degeneration (Pinnacle study report 4). CoRR Robbie Holland, Rebecca Kaye, Ahmed M. Hagag, Oliver Leingang, Thomas R. P. Taylor, Hrvoje Bogunovic, Ursula Schmidt-Erfurth, Hendrik P. N. Scholl, Daniel Rueckert, Andrew J. Lotery, Sobha Sivaprasad, Martin J. Menten
2024	—	`conf`	Forecasting Disease Progression with Parallel Hyperplanes in Longitudinal Retinal OCT. MICCAI (5) Arunava Chakravarty, Taha Emre, Dmitry A. Lachinov, Antoine Rivail, Hendrik P. N. Scholl, Lars Fritsche, Sobha Sivaprasad, Daniel Rueckert, Andrew J. Lotery, Ursula Schmidt-Erfurth, Hrvoje Bogunovic
2024	J	`jnl`	Forecasting Disease Progression with Parallel Hyperplanes in Longitudinal Retinal OCT. CoRR Arunava Chakravarty, Taha Emre, Dmitry A. Lachinov, Antoine Rivail, Hendrik P. N. Scholl, Lars Fritsche, Sobha Sivaprasad, Daniel Rueckert, Andrew J. Lotery, Ursula Schmidt-Erfurth, Hrvoje Bogunovic
2024	—	`conf`	Improving Clinical Predictions with Multi-Modal Pre-training in Retinal Imaging. ISBI Emese Sükei, Elisabeth Rumetshofer, Niklas Schmidinger, Andreas Mayr, Ursula Schmidt-Erfurth, Günter Klambauer, Hrvoje Bogunovic
2024	J	`jnl`	Interactive Deep Learning-Based Retinal OCT Layer Segmentation Refinement by Regressing Translation Maps. IEEE Access Guilherme Aresta, Teresa Araújo, Botond Fazekas, Julia Mai, Ursula Schmidt-Erfurth, Hrvoje Bogunovic
2024	J	`jnl`	Learning Spatio-Temporal Model of Disease Progression With NeuralODEs From Longitudinal Volumetric Data. IEEE Trans. Medical Imaging Dmitrii A. Lachinov, Arunava Chakravarty, Christoph Grechenig, Ursula Schmidt-Erfurth, Hrvoje Bogunovic
2024	—	`conf`	Learning Temporally Equivariance for Degenerative Disease Progression in OCT by Predicting Future Representations. MICCAI (12) Taha Emre, Arunava Chakravarty, Dmitry A. Lachinov, Antoine Rivail, Ursula Schmidt-Erfurth, Hrvoje Bogunovic
2024	J	`jnl`	Metadata-enhanced contrastive learning from retinal optical coherence tomography images. Medical Image Anal. Robbie Holland, Oliver Leingang, Hrvoje Bogunovic, Sophie Riedl, Lars Fritsche, Toby Prevost, Hendrik P. N. Scholl, Ursula Schmidt-Erfurth, Sobha Sivaprasad, Andrew J. Lotery, Daniel Rueckert, Martin J. Menten
2024	J	`jnl`	Morph-SSL: Self-Supervision With Longitudinal Morphing for Forecasting AMD Progression From OCT Volumes. IEEE Trans. Medical Imaging Arunava Chakravarty, Taha Emre, Oliver Leingang, Sophie Riedl, Julia Mai, Hendrik P. N. Scholl, Sobha Sivaprasad, Daniel Rueckert, Andrew J. Lotery, Ursula Schmidt-Erfurth, Hrvoje Bogunovic
2024	—	`conf`	Predicting Age-related Macular Degeneration Progression from Retinal Optical Coherence Tomography with Intra-Subject Temporal Consistency. MIDL Arunava Chakravarty, Taha Emre, Dmitrii A. Lachinov, Antoine Rivail, Ursula Schmidt-Erfurth, Hrvoje Bogunovic
2024	J	`jnl`	RRWNet: Recursive Refinement Network for Effective Retinal Artery/Vein Segmentation and Classification. CoRR José Morano, Guilherme Aresta, Hrvoje Bogunovic
2024	J	`jnl`	RRWNet: Recursive Refinement Network for effective retinal artery/vein segmentation and classification. Expert Syst. Appl. José Morano, Guilherme Aresta, Hrvoje Bogunovic
2024	—	`conf`	Spatiotemporal Representation Learning for Short and Long Medical Image Time Series. MICCAI (11) Chengzhi Shen, Martin J. Menten, Hrvoje Bogunovic, Ursula Schmidt-Erfurth, Hendrik P. N. Scholl, Sobha Sivaprasad, Andrew J. Lotery, Daniel Rueckert, Paul Hager, Robbie Holland
2024	J	`jnl`	Spatiotemporal Representation Learning for Short and Long Medical Image Time Series. CoRR Chengzhi Shen, Martin J. Menten, Hrvoje Bogunovic, Ursula Schmidt-Erfurth, Hendrik P. N. Scholl, Sobha Sivaprasad, Andrew J. Lotery, Daniel Rueckert, Paul Hager, Robbie Holland
2024	J	`jnl`	Specialist vision-language models for clinical ophthalmology. CoRR Robbie Holland, Thomas R. P. Taylor, Christopher Holmes, Sophie Riedl, Julia Mai, Maria Patsiamanidi, Dimitra Mitsopoulou, Paul Hager, Philip Müller, Hendrik P. N. Scholl, Hrvoje Bogunovic, Ursula Schmidt-Erfurth, Daniel Rueckert, Sobha Sivaprasad, Andrew J. Lotery, Martin J. Menten
2024	J	`jnl`	Time-Equivariant Contrastive Learning for Degenerative Disease Progression in Retinal OCT. CoRR Taha Emre, Arunava Chakravarty, Dmitrii A. Lachinov, Antoine Rivail, Ursula Schmidt-Erfurth, Hrvoje Bogunovic
2024	J	`jnl`	VLFATRollout: Fully transformer-based classifier for retinal OCT volumes. Comput. Medical Imaging Graph. Marzieh Oghbaie, Teresa Araújo, Ursula Schmidt-Erfurth, Hrvoje Bogunovic
2023	J	`jnl`	3DTINC: Time-Equivariant Non-Contrastive Learning for Predicting Disease Progression from Longitudinal OCTs. CoRR Taha Emre, Arunava Chakravarty, Antoine Rivail, Dmitrii A. Lachinov, Oliver Leingang, Sophie Riedl, Julia Mai, Hendrik P. N. Scholl, Sobha Sivaprasad, Daniel Rueckert, Andrew J. Lotery, Ursula Schmidt-Erfurth, Hrvoje Bogunovic
2023	J	`jnl`	AIROGS: Artificial Intelligence for RObust Glaucoma Screening Challenge. CoRR Coen de Vente, Koenraad A. Vermeer, Nicolas Jaccard, He Wang, Hongyi Sun, Firas Khader, Daniel Truhn, Temirgali Aimyshev, Yerkebulan Zhanibekuly, Tien-Dung Le, Adrian Galdran, Miguel Ángel González Ballester, Gustavo Carneiro, Devika R. G, Hrishikesh P. S, Densen Puthussery, Hong Liu, Zekang Yang, Satoshi Kondo, Satoshi Kasai, Edward Wang, Ashritha Durvasula, Jónathan Heras, Miguel Ángel Zapata, Teresa Araújo, Guilherme Aresta, Hrvoje Bogunovic, Mustafa Arikan, Yeong Chan Lee, Hyun Bin Cho, Yoon Ho Choi, Abdul Qayyum, Imran Razzak, Bram van Ginneken, Hans G. Lemij, Clara I. Sánchez
2023	—	`conf`	Adapting Segment Anything Model (SAM) for Retinal OCT. OMIA@MICCAI Botond Fazekas, José Morano, Dmitry A. Lachinov, Guilherme Aresta, Hrvoje Bogunovic
2023	—	`conf`	Clustering Disease Trajectories in Contrastive Feature Space for Biomarker Proposal in Age-Related Macular Degeneration. MICCAI (7) Robbie Holland, Oliver Leingang, Christopher Holmes, Philipp Anders, Rebecca Kaye, Sophie Riedl, Johannes C. Paetzold, Ivan Ezhov, Hrvoje Bogunovic, Ursula Schmidt-Erfurth, Hendrik P. N. Scholl, Sobha Sivaprasad, Andrew J. Lotery, Daniel Rueckert, Martin J. Menten
2023	J	`jnl`	Clustering disease trajectories in contrastive feature space for biomarker discovery in age-related macular degeneration. CoRR Robbie Holland, Oliver Leingang, Christopher Holmes, Philipp Anders, Johannes C. Paetzold, Rebecca Kaye, Sophie Riedl, Hrvoje Bogunovic, Ursula Schmidt-Erfurth, Lars Fritsche, Hendrik P. N. Scholl, Sobha Sivaprasad, Andrew J. Lotery, Daniel Rueckert, Martin J. Menten
2023	J	`jnl`	GAMMA challenge: Glaucoma grAding from Multi-Modality imAges. Medical Image Anal. Junde Wu, Huihui Fang, Fei Li, Huazhu Fu, Fengbin Lin, Jiongcheng Li, Yue Huang, Qinji Yu, Sifan Song, Xinxing Xu, Yanyu Xu, Wensai Wang, Lingxiao Wang, Shuai Lu, Huiqi Li, Shihua Huang, Zhichao Lu, Chubin Ou, Xifei Wei, Bingyuan Liu, Riadh Kobbi, Xiaoying Tang, Li Lin, Qiang Zhou, Qiang Hu, Hrvoje Bogunovic, José Ignacio Orlando, Xiulan Zhang, Yanwu Xu
2023	J	`jnl`	Morph-SSL: Self-Supervision with Longitudinal Morphing to Predict AMD Progression from OCT. CoRR Arunava Chakravarty, Taha Emre, Oliver Leingang, Sophie Riedl, Julia Mai, Hendrik P. N. Scholl, Sobha Sivaprasad, Daniel Rueckert, Andrew J. Lotery, Ursula Schmidt-Erfurth, Hrvoje Bogunovic
2023	J	`jnl`	PALM: Open Fundus Photograph Dataset with Pathologic Myopia Recognition and Anatomical Structure Annotation. CoRR Huihui Fang, Fei Li, Junde Wu, Huazhu Fu, Xu Sun, José Ignacio Orlando, Hrvoje Bogunovic, Xiulan Zhang, Yanwu Xu
2023	J	`jnl`	Pretrained Deep 2.5D Models for Efficient Predictive Modeling from Retinal OCT. CoRR Taha Emre, Marzieh Oghbaie, Arunava Chakravarty, Antoine Rivail, Sophie Riedl, Julia Mai, Hendrik P. N. Scholl, Sobha Sivaprasad, Daniel Rueckert, Andrew J. Lotery, Ursula Schmidt-Erfurth, Hrvoje Bogunovic
2023	—	`conf`	Pretrained Deep 2.5D Models for Efficient Predictive Modeling from Retinal OCT: A PINNACLE Study Report. OMIA@MICCAI Taha Emre, Marzieh Oghbaie, Arunava Chakravarty, Antoine Rivail, Sophie Riedl, Julia Mai, Hendrik P. N. Scholl, Sobha Sivaprasad, Daniel Rueckert, Andrew J. Lotery, Ursula Schmidt-Erfurth, Hrvoje Bogunovic
2023	J	`jnl`	SAMedOCT: Adapting Segment Anything Model (SAM) for Retinal OCT. CoRR Botond Fazekas, José Morano, Dmitrii A. Lachinov, Guilherme Aresta, Hrvoje Bogunovic
2023	J	`jnl`	Segmentation of Bruch's Membrane in Retinal OCT With AMD Using Anatomical Priors and Uncertainty Quantification. IEEE J. Biomed. Health Informatics Botond Fazekas, Dmitry A. Lachinov, Guilherme Aresta, Julia Mai, Ursula Schmidt-Erfurth, Hrvoje Bogunovic
2023	—	`conf`	Self-supervised Learning via Inter-modal Reconstruction and Feature Projection Networks for Label-Efficient 3D-to-2D Segmentation. MICCAI (4) José Morano, Guilherme Aresta, Dmitry A. Lachinov, Julia Mai, Ursula Schmidt-Erfurth, Hrvoje Bogunovic
2023	J	`jnl`	Self-supervised learning via inter-modal reconstruction and feature projection networks for label-efficient 3D-to-2D segmentation. CoRR José Morano, Guilherme Aresta, Dmitrii A. Lachinov, Julia Mai, Ursula Schmidt-Erfurth, Hrvoje Bogunovic
2023	—	`conf`	Transformer-Based End-to-End Classification of Variable-Length Volumetric Data. MICCAI (6) Marzieh Oghbaie, Teresa Araújo, Taha Emre, Ursula Schmidt-Erfurth, Hrvoje Bogunovic
2023	J	`jnl`	Transformer-based end-to-end classification of variable-length volumetric data. CoRR Marzieh Oghbaie, Teresa Araujo, Taha Emre, Ursula Schmidt-Erfurth, Hrvoje Bogunovic
2022	J	`jnl`	ADAM Challenge: Detecting Age-Related Macular Degeneration From Fundus Images. IEEE Trans. Medical Imaging Huihui Fang, Fei Li, Huazhu Fu, Xu Sun, Xingxing Cao, Fengbin Lin, Jaemin Son, Sunho Kim, Gwenolé Quellec, Sarah Matta, Sharath M. Shankaranarayana, Yi-Ting Chen, Chuen-heng Wang, Nisarg A. Shah, Chia-Yen Lee, Chih-Chung Hsu, Hai Xie, Baiying Lei, Ujjwal Baid, Shubham Innani, Kang Dang, Wenxiu Shi, Ravi Kamble, Nitin Singhal, Ching-Wei Wang, Shih-Chang Lo, José Ignacio Orlando, Hrvoje Bogunovic, Xiulan Zhang, Yanwu Xu
2022	J	`jnl`	ADAM Challenge: Detecting Age-related Macular Degeneration from Fundus Images. CoRR Huihui Fang, Fei Li, Huazhu Fu, Xu Sun, Xingxing Cao, Fengbin Lin, Jaemin Son, Sunho Kim, Gwenolé Quellec, Sarah Matta, Sharath M. Shankaranarayana, Yi-Ting Chen, Chuen-heng Wang, Nisarg A. Shah, Chia-Yen Lee, Chih-Chung Hsu, Hai Xie, Baiying Lei, Ujjwal Baid, Shubham Innani, Kang Dang, Wenxiu Shi, Ravi Kamble, Nitin Singhal, José Ignacio Orlando, Hrvoje Bogunovic, Xiulan Zhang, Yanwu Xu
2022	J	`jnl`	Deep Dirichlet uncertainty for unsupervised out-of-distribution detection of eye fundus photographs in glaucoma screening. CoRR Teresa Araújo, Guilherme Aresta, Hrvoje Bogunovic
2022	J	`jnl`	GAMMA Challenge: Glaucoma grAding from Multi-Modality imAges. CoRR Junde Wu, Huihui Fang, Fei Li, Huazhu Fu, Fengbin Lin, Jiongcheng Li, Lexing Huang, Qinji Yu, Sifan Song, Xingxing Xu, Yanyu Xu, Wensai Wang, Lingxiao Wang, Shuai Lu, Huiqi Li, Shihua Huang, Zhichao Lu, Chubin Ou, Xifei Wei, Bingyuan Liu, Riadh Kobbi, Xiaoying Tang, Li Lin, Qiang Zhou, Qiang Hu, Hrvoje Bogunovic, José Ignacio Orlando, Xiulan Zhang, Yanwu Xu
2022	J	`jnl`	Learning Spatio-Temporal Model of Disease Progression with NeuralODEs from Longitudinal Volumetric Data. CoRR Dmitrii A. Lachinov, Arunava Chakravarty, Christoph Grechenig, Ursula Schmidt-Erfurth, Hrvoje Bogunovic
2022	J	`jnl`	Metadata-enhanced contrastive learning from retinal optical coherence tomography images. CoRR Robbie Holland, Oliver Leingang, Hrvoje Bogunovic, Sophie Riedl, Lars Fritsche, Toby Prevost, Hendrik P. N. Scholl, Ursula Schmidt-Erfurth, Sobha Sivaprasad, Andrew J. Lotery, Daniel Rueckert, Martin J. Menten
2022	J	`jnl`	REFUGE2 Challenge: Treasure for Multi-Domain Learning in Glaucoma Assessment. CoRR Huihui Fang, Fei Li, Huazhu Fu, Xu Sun, Xingxing Cao, Jaemin Son, Shuang Yu, Menglu Zhang, Chenglang Yuan, Cheng Bian, Baiying Lei, Benjian Zhao, Xinxing Xu, Shaohua Li, Francisco Fumero, José F. Sigut, Haidar Almubarak, Yakoub Bazi, Yuanhao Guo, Yating Zhou, Ujjwal Baid, Shubham Innani, Tianjiao Guo, Jie Yang, José Ignacio Orlando, Hrvoje Bogunovic, Xiulan Zhang, Yanwu Xu
2022	J	`jnl`	Robust Fovea Detection in Retinal OCT Imaging Using Deep Learning. IEEE J. Biomed. Health Informatics Simon Schürer-Waldheim, Philipp Seeböck, Hrvoje Bogunovic, Bianca S. Gerendas, Ursula Schmidt-Erfurth
2022	—	`conf`	SD-LayerNet: Semi-supervised Retinal Layer Segmentation in OCT Using Disentangled Representation with Anatomical Priors. MICCAI (8) Botond Fazekas, Guilherme Aresta, Dmitry A. Lachinov, Sophie Riedl, Julia Mai, Ursula Schmidt-Erfurth, Hrvoje Bogunovic
2022	J	`jnl`	SD-LayerNet: Semi-supervised retinal layer segmentation in OCT using disentangled representation with anatomical priors. CoRR Botond Fazekas, Guilherme Aresta, Dmitrii A. Lachinov, Sophie Riedl, Julia Mai, Ursula Schmidt-Erfurth, Hrvoje Bogunovic
2022	J	`jnl`	Segmentation of Bruch's Membrane in retinal OCT with AMD using anatomical priors and uncertainty quantification. CoRR Botond Fazekas, Dmitrii A. Lachinov, Guilherme Aresta, Julia Mai, Ursula Schmidt-Erfurth, Hrvoje Bogunovic
2022	J	`jnl`	TINC: Temporally Informed Non-Contrastive Learning for Disease Progression Modeling in Retinal OCT Volumes. CoRR Taha Emre, Arunava Chakravarty, Antoine Rivail, Sophie Riedl, Ursula Schmidt-Erfurth, Hrvoje Bogunovic
2022	—	`conf`	TINC: Temporally Informed Non-contrastive Learning for Disease Progression Modeling in Retinal OCT Volumes. MICCAI (2) Taha Emre, Arunava Chakravarty, Antoine Rivail, Sophie Riedl, Ursula Schmidt-Erfurth, Hrvoje Bogunovic
2021	—	`conf`	Deep Learning Prediction Of Age And Sex From Optical Coherence Tomography. ISBI Osama N. Hassan, Martin J. Menten, Hrvoje Bogunovic, Ursula Schmidt-Erfurth, Andrew J. Lotery, Daniel Rueckert
2021	—	`conf`	Projective Skip-Connections for Segmentation Along a Subset of Dimensions in Retinal OCT. MICCAI (1) Dmitrii A. Lachinov, Philipp Seeböck, Julia Mai, Felix Goldbach, Ursula Schmidt-Erfurth, Hrvoje Bogunovic
2021	J	`jnl`	Projective Skip-Connections for Segmentation Along a Subset of Dimensions in Retinal OCT. CoRR Dmitrii A. Lachinov, Philipp Seeböck, Julia Mai, Ursula Schmidt-Erfurth, Hrvoje Bogunovic
2020	J	`jnl`	AGE Challenge: Angle Closure Glaucoma Evaluation in Anterior Segment Optical Coherence Tomography. CoRR Huazhu Fu, Fei Li, Xu Sun, Xingxing Cao, Jingan Liao, José Ignacio Orlando, Xing Tao, Yuexiang Li, Shihao Zhang, Mingkui Tan, Chenglang Yuan, Cheng Bian, Ruitao Xie, Jiongcheng Li, Xiaomeng Li, Jing Wang, Le Geng, Panming Li, Huaying Hao, Jiang Liu, Yan Kong, Yongyong Ren, Hrvoje Bogunovic, Xiulan Zhang, Yanwu Xu
2020	J	`jnl`	Correction to "Exploiting Epistemic Uncertainty of Anatomy Segmentation for Anomaly Detection in Retinal OCT". IEEE Trans. Medical Imaging Philipp Seeböck, José Ignacio Orlando, Thomas Schlegl, Sebastian M. Waldstein, Hrvoje Bogunovic, Sophie Klimscha, Georg Langs, Ursula Schmidt-Erfurth
2020	J	`jnl`	End-to-End Deep Learning Model for Predicting Treatment Requirements in Neovascular AMD From Longitudinal Retinal OCT Imaging. IEEE J. Biomed. Health Informatics David Romo-Bucheli, Ursula Schmidt-Erfurth, Hrvoje Bogunovic
2020	J	`jnl`	Exploiting Epistemic Uncertainty of Anatomy Segmentation for Anomaly Detection in Retinal OCT. IEEE Trans. Medical Imaging Philipp Seeböck, José Ignacio Orlando, Thomas Schlegl, Sebastian M. Waldstein, Hrvoje Bogunovic, Sophie Klimscha, Georg Langs, Ursula Schmidt-Erfurth
2020	J	`jnl`	REFUGE Challenge: A unified framework for evaluating automated methods for glaucoma assessment from fundus photographs. Medical Image Anal. José Ignacio Orlando, Huazhu Fu, João Barbosa Breda, Karel van Keer, Deepti R. Bathula, Andrés Diaz-Pinto, Ruogu Fang, Pheng-Ann Heng, Jeyoung Kim, Joonho Lee, Joonseok Lee, Xiaoxiao Li, Peng Liu, Shuai Lu, Balamurali Murugesan, Valery Naranjo, Sai Samarth R. Phaye, Sharath M. Shankaranarayana, Hrvoje Bogunovic
2019	—	`conf`	An Amplified-Target Loss Approach for Photoreceptor Layer Segmentation in Pathological OCT Scans. OMIA@MICCAI José Ignacio Orlando, Anna Breger, Hrvoje Bogunovic, Sophie Riedl, Bianca S. Gerendas, Martin Ehler, Ursula Schmidt-Erfurth
2019	J	`jnl`	An amplified-target loss approach for photoreceptor layer segmentation in pathological OCT scans. CoRR José Ignacio Orlando, Anna Breger, Hrvoje Bogunovic, Sophie Riedl, Bianca S. Gerendas, Martin Ehler, Ursula Schmidt-Erfurth
2019	J	`jnl`	Exploiting Epistemic Uncertainty of Anatomy Segmentation for Anomaly Detection in Retinal OCT. CoRR Philipp Seeböck, José Ignacio Orlando, Thomas Schlegl, Sebastian M. Waldstein, Hrvoje Bogunovic, Sophie Klimscha, Georg Langs, Ursula Schmidt-Erfurth
2019	J	`jnl`	Modeling Disease Progression In Retinal OCTs With Longitudinal Self-Supervised Learning. CoRR Antoine Rivail, Ursula Schmidt-Erfurth, Wolf-Dieter Vogl, Sebastian M. Waldstein, Sophie Riedl, Christoph Grechenig, Zhichao Wu, Hrvoje Bogunovic
2019	—	`conf`	Modeling Disease Progression in Retinal OCTs with Longitudinal Self-supervised Learning. PRIME@MICCAI Antoine Rivail, Ursula Schmidt-Erfurth, Wolf-Dieter Vogl, Sebastian M. Waldstein, Sophie Riedl, Christoph Grechenig, Zhichao Wu, Hrvoje Bogunovic
2019	—	`conf`	Multiclass Segmentation as Multitask Learning for Drusen Segmentation in Retinal Optical Coherence Tomography. MICCAI (1) Rhona Asgari, José Ignacio Orlando, Sebastian M. Waldstein, Ferdinand Schlanitz, Magdalena Baratsits, Ursula Schmidt-Erfurth, Hrvoje Bogunovic
2019	J	`jnl`	Multiclass segmentation as multitask learning for drusen segmentation in retinal optical coherence tomography. CoRR Rhona Asgari, José Ignacio Orlando, Sebastian M. Waldstein, Ferdinand Schlanitz, Magdalena Baratsits, Ursula Schmidt-Erfurth, Hrvoje Bogunovic
2019	J	`jnl`	REFUGE Challenge: A Unified Framework for Evaluating Automated Methods for Glaucoma Assessment from Fundus Photographs. CoRR José Ignacio Orlando, Huazhu Fu, João Barbosa Breda, Karel van Keer, Deepti R. Bathula, Andrés Diaz-Pinto, Ruogu Fang, Pheng-Ann Heng, Jeyoung Kim, Joonho Lee, Joonseok Lee, Xiaoxiao Li, Peng Liu, Shuai Lu, Balamurali Murugesan, Valery Naranjo, Sai Samarth R. Phaye, Sharath M. Shankaranarayana, Apoorva Sikka, Jaemin Son, Anton van den Hengel, Shujun Wang, Junyan Wu, Zifeng Wu, Guanghui Xu, Yong-Li Xu, Pengshuai Yin, Fei Li, Xiulan Zhang, Yanwu Xu, Hrvoje Bogunovic
2019	J	`jnl`	RETOUCH: The Retinal OCT Fluid Detection and Segmentation Benchmark and Challenge. IEEE Trans. Medical Imaging Hrvoje Bogunovic, Freerk G. Venhuizen, Sophie Klimscha, Stefanos Apostolopoulos, Alireza Bab-Hadiashar, Ulas Bagci, Mirza Faisal Beg, Loza Bekalo, Qiang Chen, Carlos Ciller, Karthik Gopinath, Amirali K. Gostar, Kiwan Jeon, Zexuan Ji, Sung Ho Kang, Dara D. Koozekanani, Donghuan Lu, Dustin Morley, Keshab K. Parhi, Hyoung Suk Park, Abdolreza Rashno, Marinko Sarunic, Saad Shaikh, Jayanthi Sivaswamy, Ruwan B. Tennakoon, Shivin Yadav, Sandro De Zanet, Sebastian M. Waldstein, Bianca S. Gerendas, Caroline Klaver, Clara I. Sánchez, Ursula Schmidt-Erfurth
2019	—	`conf`	U-Net with Spatial Pyramid Pooling for Drusen Segmentation in Optical Coherence Tomography. OMIA@MICCAI Rhona Asgari, Sebastian M. Waldstein, Ferdinand Schlanitz, Magdalena Baratsits, Ursula Schmidt-Erfurth, Hrvoje Bogunovic
2019	J	`jnl`	U-Net with spatial pyramid pooling for drusen segmentation in optical coherence tomography. CoRR Rhona Asgari, Sebastian M. Waldstein, Ferdinand Schlanitz, Magdalena Baratsits, Ursula Schmidt-Erfurth, Hrvoje Bogunovic
2019	—	`conf`	U2-Net: A Bayesian U-Net Model With Epistemic Uncertainty Feedback For Photoreceptor Layer Segmentation In Pathological OCT Scans. ISBI José Ignacio Orlando, Philipp Seeböck, Hrvoje Bogunovic, Sophie Klimscha, Christoph Grechenig, Sebastian M. Waldstein, Bianca S. Gerendas, Ursula Schmidt-Erfurth
2019	J	`jnl`	U2-Net: A Bayesian U-Net model with epistemic uncertainty feedback for photoreceptor layer segmentation in pathological OCT scans. CoRR José Ignacio Orlando, Philipp Seeböck, Hrvoje Bogunovic, Sophie Klimscha, Christoph Grechenig, Sebastian M. Waldstein, Bianca S. Gerendas, Ursula Schmidt-Erfurth
2019	J	`jnl`	Unsupervised Identification of Disease Marker Candidates in Retinal OCT Imaging Data. IEEE Trans. Medical Imaging Philipp Seeböck, Sebastian M. Waldstein, Sophie Klimscha, Hrvoje Bogunovic, Thomas Schlegl, Bianca S. Gerendas, Rene Donner, Ursula Schmidt-Erfurth, Georg Langs
2019	J	`jnl`	Using CycleGANs for effectively reducing image variability across OCT devices and improving retinal fluid segmentation. CoRR Philipp Seeböck, David Romo-Bucheli, Sebastian M. Waldstein, Hrvoje Bogunovic, José Ignacio Orlando, Bianca S. Gerendas, Georg Langs, Ursula Schmidt-Erfurth
2019	—	`conf`	Using Cyclegans for Effectively Reducing Image Variability Across OCT Devices and Improving Retinal Fluid Segmentation. ISBI Philipp Seeböck, David Romo-Bucheli, Sebastian M. Waldstein, Hrvoje Bogunovic, José Ignacio Orlando, Bianca S. Gerendas, Georg Langs, Ursula Schmidt-Erfurth
2018	—	`ed.`	Computational Pathology and Ophthalmic Medical Image Analysis - First International Workshop, COMPAY 2018, and 5th International Workshop, OMIA 2018, Held in Conjunction with MICCAI 2018, Granada, Spain, September 16-20, 2018, Proceedings COMPAY/OMIA@MICCAI Danail Stoyanov, Zeike Taylor, Francesco Ciompi, Yanwu Xu, Anne L. Martel, Lena Maier-Hein, Nasir M. Rajpoot, Jeroen van der Laak, Mitko Veta, Stephen J. McKenna, David R. J. Snead, Emanuele Trucco, Mona Kathryn Garvin, Xinjian Chen, Hrvoje Bogunovic
2018	J	`jnl`	Fully Automated Segmentation of Hyperreflective Foci in Optical Coherence Tomography Images. CoRR Thomas Schlegl, Hrvoje Bogunovic, Sophie Klimscha, Philipp Seeböck, Amir Sadeghipour, Bianca S. Gerendas, Sebastian M. Waldstein, Georg Langs, Ursula Schmidt-Erfurth
2018	—	`conf`	How to Exploit Weaknesses in Biomedical Challenge Design and Organization. MICCAI (4) Annika Reinke, Matthias Eisenmann, Sinan Onogur, Marko Stankovic, Patrick Scholz, Peter M. Full, Hrvoje Bogunovic, Bennett A. Landman, Oskar Maier, Bjoern H. Menze, Gregory C. Sharp, Korsuk Sirinukunwattana, Stefanie Speidel, Fons van der Sommen, Guoyan Zheng, Henning Müller, Michal Kozubek, Tal Arbel, Andrew P. Bradley, Pierre Jannin, Annette Kopp-Schneider, Lena Maier-Hein
2018	J	`jnl`	Is the winner really the best? A critical analysis of common research practice in biomedical image analysis competitions. CoRR Lena Maier-Hein, Matthias Eisenmann, Annika Reinke, Sinan Onogur, Marko Stankovic, Patrick Scholz, Tal Arbel, Hrvoje Bogunovic, Andrew P. Bradley, Aaron Carass, Carolin Feldmann, Alejandro F. Frangi, Peter M. Full, Bram van Ginneken, Allan Hanbury, Katrin Honauer, Michal Kozubek, Bennett A. Landman, Keno März, Oskar Maier, Klaus H. Maier-Hein, Bjoern H. Menze, Henning Müller, Peter F. Neher, Wiro J. Niessen, Nasir M. Rajpoot, Gregory C. Sharp, Korsuk Sirinukunwattana, Stefanie Speidel, Christian Stock, Danail Stoyanov, Abdel Aziz Taha, Fons van der Sommen, Ching-Wei Wang, Marc-André Weber, Guoyan Zheng, Pierre Jannin, Annette Kopp-Schneider
2018	J	`jnl`	Unsupervised Identification of Disease Marker Candidates in Retinal OCT Imaging Data. CoRR Philipp Seeböck, Sebastian M. Waldstein, Sophie Klimscha, Hrvoje Bogunovic, Thomas Schlegl, Bianca S. Gerendas, René Donner, Ursula Schmidt-Erfurth, Georg Langs
2017	—	`ed.`	Fetal, Infant and Ophthalmic Medical Image Analysis - International Workshop, FIFI 2017, and 4th International Workshop, OMIA 2017, Held in Conjunction with MICCAI 2017, Québec City, QC, Canada, September 14, 2017, Proceedings FIFI/OMIA@MICCAI M. Jorge Cardoso, Tal Arbel, Andrew Melbourne, Hrvoje Bogunovic, Pim Moeskops, Xinjian Chen, Ernst Schwartz, Mona Kathryn Garvin, Emma C. Robinson, Emanuele Trucco, Michael Ebner, Yanwu Xu, Antonios Makropoulos, Adrien E. Desjardins, Tom Vercauteren
2014	J	`jnl`	Multi-Surface and Multi-Field Co-Segmentation of 3-D Retinal Optical Coherence Tomography. IEEE Trans. Medical Imaging Hrvoje Bogunovic, Milan Sonka, Young H. Kwon, Pavlina Kemp, Michael D. Abràmoff, Xiaodong Wu
2013	J	`jnl`	Anatomical Labeling of the Circle of Willis Using Maximum A Posteriori Probability Estimation. IEEE Trans. Medical Imaging Hrvoje Bogunovic, José María Pozo, Rubén Cárdenes, Luis San-Román, Alejandro F. Frangi
2012	J	`jnl`	AngioLab - A software tool for morphological analysis and endovascular treatment planning of intracranial aneurysms. Comput. Methods Programs Biomed. Ignacio Larrabide, Maria-Cruz Villa-Uriol, Rubén Cárdenes, Valeria Barbarito, Luigi Carotenuto, Arjan J. Geers, Hernán G. Morales, José María Pozo, Marco D. Mazzeo, Hrvoje Bogunovic, Pedro Omedas, Chiara Riccobene, Juan M. Macho, Alejandro F. Frangi
2012	J	`jnl`	Automated landmarking and geometric characterization of the carotid siphon. Medical Image Anal. Hrvoje Bogunovic, José María Pozo, Rubén Cárdenes, Maria-Cruz Villa-Uriol, Raphaël Blanc, Michel Piotin, Alejandro F. Frangi
2012	—	`—`	Geometric modeling and characterization of the circle of willis. Hrvoje Bogunovic
2011	—	`conf`	3D Modeling of Coronary Artery Bifurcations from CTA and Conventional Coronary Angiography. MICCAI (3) Rubén Cárdenes, José-Luis Díez, Ignacio Larrabide, Hrvoje Bogunovic, Alejandro F. Frangi
2011	—	`conf`	Anatomical Labeling of the Anterior Circulation of the Circle of Willis Using Maximum a Posteriori Classification. MICCAI (3) Hrvoje Bogunovic, José María Pozo, Rubén Cárdenes, Alejandro F. Frangi
2011	J	`jnl`	Automatic Aneurysm Neck Detection Using Surface Voronoi Diagrams. IEEE Trans. Medical Imaging Rubén Cárdenes, José María Pozo, Hrvoje Bogunovic, Ignacio Larrabide, Alejandro F. Frangi
2010	B	`conf`	Fast 3D centerline computation for tubular structures by front collapsing and fast marching. ICIP Rubén Cárdenes, Hrvoje Bogunovic, Alejandro F. Frangi
2009	—	`conf`	Reproducibility of Image-Based Computational Hemodynamics in Intracranial Aneurysms: Comparison of CTA and 3DRA. ISBI Arjan J. Geers, Ignacio Larrabide, Alessandro Radaelli, Hrvoje Bogunovic, Hugo A. F. Gratama van Andel, Charles B. L. M. Majoie, Alejandro F. Frangi
2009	J	`jnl`	Standardized evaluation methodology and reference database for evaluating coronary artery centerline extraction algorithms. Medical Image Anal. Michiel Schaap, Coert Metz, Theo van Walsum, Alina G. van der Giessen, Annick C. Weustink, Nico Mollet, Christian Bauer, Hrvoje Bogunovic, Carlos Castro-Gonzalez, Xiang Deng, Engin Dikici, Thomas O'Donnell, Michel Frenay, Ola Friman, Marcela Hernández Hoyos, Pieter H. Kitslaar, Karl Krissian, Caroline Kühnel, Miguel A. Luengo-Oroz, Maciej Orkisz, Örjan Smedby, Martin Styner, Andrzej Szymczak, Hüseyin Tek, Chunliang Wang, Simon K. Warfield, Sebastian Zambal, Yong Zhang, Gabriel P. Krestin, Wiro J. Niessen
2008	B	`conf`	Image intensity standardization in 3D rotational angiography and its application to vascular segmentation. Image Processing Hrvoje Bogunovic, Alessandro G. Radaelli, Mathieu De Craene, David Delgado-Gómez, Alejandro F. Frangi
2006	—	`conf`	Blood Flow and Velocity Estimation Based on Vessel Transit Time by Combining 2D and 3D X-Ray Angiography. MICCAI (2) Hrvoje Bogunovic, Sven Loncaric
2005	—	`conf`	Denoising of Time-Density Data in Digital Subtraction Angiography. SCIA Hrvoje Bogunovic, Sven Loncaric